Literature DB >> 21636924

Crystallization and preliminary X-ray crystallographic analysis of eIF5BΔN and the eIF5BΔN-eIF1AΔN complex.

Aiping Zheng1, Reo Yamamoto, Masaaki Sokabe, Isao Tanaka, Min Yao.   

Abstract

The binding between two universally conserved translation initiation factors, eIF5B and eIF1A, is important in the initiation step of eukaryotic protein synthesis on the ribosome. Through this interaction, eIF1A assists in recruiting eIF5B to the initiating 40S subunit; eIF5B then encourages the joining of the 60S subunit to form an initiating 80S ribosome. Here, the expression, purification, crystallization and preliminary X-ray analyses of eIF5BΔN and the eIF5BΔN-eIF1AΔN complex from Saccharomyces cerevisiae are reported. The crystal of eIF5BΔN diffracted to 2.45 Å resolution and belonged to space group P4(1)2(1)2, with unit-cell parameters a = b = 130.0, c = 71.7 Å. The asymmetric unit was estimated to contain one molecule. The initial phase was obtained by Se-SAD. The crystal of the eIF5BΔN-eIF1AΔN complex diffracted to 3.3 Å resolution and belonged to space group P2(1)2(1)2(1), with unit-cell parameters a = 101.9, b = 120.9, c = 132.8 Å. The asymmetric unit was estimated to contain two complex molecules.

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Year:  2011        PMID: 21636924      PMCID: PMC3107155          DOI: 10.1107/S1744309111015910

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  32 in total

1.  Crystal structure of an initiation factor bound to the 30S ribosomal subunit.

Authors:  A P Carter; W M Clemons; D E Brodersen; R J Morgan-Warren; T Hartsch; B T Wimberly; V Ramakrishnan
Journal:  Science       Date:  2001-01-19       Impact factor: 47.728

2.  Universal conservation in translation initiation revealed by human and archaeal homologs of bacterial translation initiation factor IF2.

Authors:  J H Lee; S K Choi; A Roll-Mecak; S K Burley; T E Dever
Journal:  Proc Natl Acad Sci U S A       Date:  1999-04-13       Impact factor: 11.205

3.  Single-wavelength anomalous diffraction phasing revisited.

Authors:  L M Rice; T N Earnest; A T Brunger
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2000-11

4.  Physical and functional interaction between the eukaryotic orthologs of prokaryotic translation initiation factors IF1 and IF2.

Authors:  S K Choi; D S Olsen; A Roll-Mecak; A Martung; K L Remo; S K Burley; A G Hinnebusch; T E Dever
Journal:  Mol Cell Biol       Date:  2000-10       Impact factor: 4.272

5.  The joining of ribosomal subunits in eukaryotes requires eIF5B.

Authors:  T V Pestova; I B Lomakin; J H Lee; S K Choi; T E Dever; C U Hellen
Journal:  Nature       Date:  2000-01-20       Impact factor: 49.962

6.  The eIF1A solution structure reveals a large RNA-binding surface important for scanning function.

Authors:  J L Battiste; T V Pestova; C U Hellen; G Wagner
Journal:  Mol Cell       Date:  2000-01       Impact factor: 17.970

7.  X-Ray structures of the universal translation initiation factor IF2/eIF5B: conformational changes on GDP and GTP binding.

Authors:  A Roll-Mecak; C Cao; T E Dever; S K Burley
Journal:  Cell       Date:  2000-11-22       Impact factor: 41.582

8.  Automated MAD and MIR structure solution.

Authors:  T C Terwilliger; J Berendzen
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-04

9.  Mapping the binding interface between human eukaryotic initiation factors 1A and 5B: a new interaction between old partners.

Authors:  Assen Marintchev; Victoria G Kolupaeva; Tatyana V Pestova; Gerhard Wagner
Journal:  Proc Natl Acad Sci U S A       Date:  2003-02-04       Impact factor: 11.205

10.  Maximum-likelihood density modification.

Authors:  T C Terwilliger
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2000-08
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  2 in total

1.  The structural basis of FtsY recruitment and GTPase activation by SRP RNA.

Authors:  Felix Voigts-Hoffmann; Nikolaus Schmitz; Kuang Shen; Shu-Ou Shan; Sandro F Ataide; Nenad Ban
Journal:  Mol Cell       Date:  2013-11-07       Impact factor: 17.970

2.  Influence of translation factor activities on start site selection in six different mRNAs.

Authors:  Daine Barth-Baus; C Ramana Bhasker; Wendy Zoll; William C Merrick
Journal:  Translation (Austin)       Date:  2013-04-01
  2 in total

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