Literature DB >> 21635954

Structure and stability of the lamin A tail domain and HGPS mutant.

Zhao Qin1, Agnieszka Kalinowski, Kris Noel Dahl, Markus J Buehler.   

Abstract

Hutchinson-Gilford progeria syndrome (HGPS) is a premature aging syndrome caused by the expression and accumulation of a mutant form of lamin A, Δ50 lamin A. As a component of the cell's nucleoskeleton, lamin A plays an important role in the mechanical stabilization of the nuclear envelope and in other nuclear functions. It is largely unknown how the characteristic 50 amino acid deletion affects the conformation of the mostly intrinsically disordered tail domain of lamin A. Here we perform replica exchange molecular dynamics simulations of the tail domain and determine an ensemble of semi-stable structures. Based on these structures we show that the ZMPSTE 24 cleavage site on the precursor form of the lamin A tail domain orients itself in such a way as to facilitate cleavage during the maturation process. We confirm our simulated structures by comparing the thermodynamic properties of the ensemble structures to in vitro stability measurements. Using this combination of experimental and computational techniques, we compare the size, heterogeneity of size, thermodynamic stability of the Ig-fold, as well as the mechanisms of force-induced denaturation. Our data shows that the Δ50 lamin A tail domain is more compact and displays less heterogeneity than the mature lamin A tail domain. Altogether these results suggest that the altered structure and stability of the tail domain can explain changed protein-protein and protein-DNA interactions and may represent an etiology of the disease. Also, this study provides the first molecular structure(s) of the lamin A tail domain, which is confirmed by thermodynamic tests in experiment.
Copyright © 2011 Elsevier Inc. All rights reserved.

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Year:  2011        PMID: 21635954      PMCID: PMC3150306          DOI: 10.1016/j.jsb.2011.05.015

Source DB:  PubMed          Journal:  J Struct Biol        ISSN: 1047-8477            Impact factor:   2.867


  51 in total

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Journal:  Biochemistry       Date:  2003-05-06       Impact factor: 3.162

2.  The Ig-like structure of the C-terminal domain of lamin A/C, mutated in muscular dystrophies, cardiomyopathy, and partial lipodystrophy.

Authors:  Isabelle Krimm; Cecilia Ostlund; Bernard Gilquin; Joël Couprie; Paul Hossenlopp; Jean-Paul Mornon; Gisèle Bonne; Jean-Claude Courvalin; Howard J Worman; Sophie Zinn-Justin
Journal:  Structure       Date:  2002-06       Impact factor: 5.006

3.  Analysis of peptaibol sequence composition: implications for in vivo synthesis and channel formation.

Authors:  L Whitmore; B A Wallace
Journal:  Eur Biophys J       Date:  2003-10-08       Impact factor: 1.733

4.  A comparative study of the relationship between protein structure and beta-aggregation in globular and intrinsically disordered proteins.

Authors:  Rune Linding; Joost Schymkowitz; Frederic Rousseau; Francesca Diella; Luis Serrano
Journal:  J Mol Biol       Date:  2004-09-03       Impact factor: 5.469

5.  The nuclear envelope lamina network has elasticity and a compressibility limit suggestive of a molecular shock absorber.

Authors:  Kris Noel Dahl; Samuel M Kahn; Katherine L Wilson; Dennis E Discher
Journal:  J Cell Sci       Date:  2004-08-25       Impact factor: 5.285

Review 6.  Proteins that bind A-type lamins: integrating isolated clues.

Authors:  Michael S Zastrow; Sylvia Vlcek; Katherine L Wilson
Journal:  J Cell Sci       Date:  2004-03-01       Impact factor: 5.285

7.  Lamin A and ZMPSTE24 (FACE-1) defects cause nuclear disorganization and identify restrictive dermopathy as a lethal neonatal laminopathy.

Authors:  Claire L Navarro; Annachiara De Sandre-Giovannoli; Rafaëlle Bernard; Irène Boccaccio; Amandine Boyer; David Geneviève; Smail Hadj-Rabia; Caroline Gaudy-Marqueste; Henk Sillevis Smitt; Pierre Vabres; Laurence Faivre; Alain Verloes; Ton Van Essen; Elisabeth Flori; Raoul Hennekam; Frits A Beemer; Nicole Laurent; Martine Le Merrer; Pierre Cau; Nicolas Lévy
Journal:  Hum Mol Genet       Date:  2004-08-18       Impact factor: 6.150

8.  Accumulation of mutant lamin A causes progressive changes in nuclear architecture in Hutchinson-Gilford progeria syndrome.

Authors:  Robert D Goldman; Dale K Shumaker; Michael R Erdos; Maria Eriksson; Anne E Goldman; Leslie B Gordon; Yosef Gruenbaum; Satya Khuon; Melissa Mendez; Renée Varga; Francis S Collins
Journal:  Proc Natl Acad Sci U S A       Date:  2004-06-07       Impact factor: 11.205

9.  A farnesyltransferase inhibitor prevents both the onset and late progression of cardiovascular disease in a progeria mouse model.

Authors:  Brian C Capell; Michelle Olive; Michael R Erdos; Kan Cao; Dina A Faddah; Urraca L Tavarez; Karen N Conneely; Xuan Qu; Hong San; Santhi K Ganesh; Xiaoyan Chen; Hedwig Avallone; Frank D Kolodgie; Renu Virmani; Elizabeth G Nabel; Francis S Collins
Journal:  Proc Natl Acad Sci U S A       Date:  2008-10-06       Impact factor: 11.205

10.  Stretching single talin rod molecules activates vinculin binding.

Authors:  Armando del Rio; Raul Perez-Jimenez; Ruchuan Liu; Pere Roca-Cusachs; Julio M Fernandez; Michael P Sheetz
Journal:  Science       Date:  2009-01-30       Impact factor: 63.714

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  17 in total

1.  The tail domain of lamin B1 is more strongly modulated by divalent cations than lamin A.

Authors:  Sairaam Ganesh; Zhao Qin; Stephen T Spagnol; Matthew T Biegler; Kelli A Coffey; Agnieszka Kalinowski; Markus J Buehler; Kris Noel Dahl
Journal:  Nucleus       Date:  2015-03-25       Impact factor: 4.197

Review 2.  Hutchinson-Gilford Progeria Syndrome: A Premature Aging Disease.

Authors:  Muhammad Saad Ahmed; Sana Ikram; Nousheen Bibi; Asif Mir
Journal:  Mol Neurobiol       Date:  2017-06-28       Impact factor: 5.590

Review 3.  Mechanical Properties and Failure of Biopolymers: Atomistic Reactions to Macroscale Response.

Authors:  GangSeob Jung; Zhao Qin; Markus J Buehler
Journal:  Top Curr Chem       Date:  2015

Review 4.  From lamins to lamina: a structural perspective.

Authors:  Monika Zwerger; Ohad Medalia
Journal:  Histochem Cell Biol       Date:  2013-06-07       Impact factor: 4.304

5.  Nuclear stiffening inhibits migration of invasive melanoma cells.

Authors:  Alexandre J S Ribeiro; Payal Khanna; Aishwarya Sukumar; Cheng Dong; Kris Noel Dahl
Journal:  Cell Mol Bioeng       Date:  2014-12-01       Impact factor: 2.321

6.  Calcium causes a conformational change in lamin A tail domain that promotes farnesyl-mediated membrane association.

Authors:  Agnieszka Kalinowski; Zhao Qin; Kelli Coffey; Ravi Kodali; Markus J Buehler; Mathias Lösche; Kris Noel Dahl
Journal:  Biophys J       Date:  2013-05-21       Impact factor: 4.033

Review 7.  The cellular mastermind(?)-mechanotransduction and the nucleus.

Authors:  Ashley Kaminski; Gregory R Fedorchak; Jan Lammerding
Journal:  Prog Mol Biol Transl Sci       Date:  2014       Impact factor: 3.622

8.  Interfacial binding and aggregation of lamin A tail domains associated with Hutchinson-Gilford progeria syndrome.

Authors:  Agnieszka Kalinowski; Peter N Yaron; Zhao Qin; Siddharth Shenoy; Markus J Buehler; Mathias Lösche; Kris Noel Dahl
Journal:  Biophys Chem       Date:  2014-08-23       Impact factor: 2.352

Review 9.  Broken nuclei--lamins, nuclear mechanics, and disease.

Authors:  Patricia M Davidson; Jan Lammerding
Journal:  Trends Cell Biol       Date:  2013-12-02       Impact factor: 20.808

10.  Intramolecular interactions stabilizing compact conformations of the intrinsically disordered kinase-inhibitor domain of Sic1: a molecular dynamics investigation.

Authors:  Matteo Lambrughi; Elena Papaleo; Lorenzo Testa; Stefania Brocca; Luca De Gioia; Rita Grandori
Journal:  Front Physiol       Date:  2012-11-22       Impact factor: 4.566

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