Literature DB >> 21627642

Exome sequencing and the genetics of intellectual disability.

S Topper1, C Ober, Soma Das.   

Abstract

Exome sequencing has greatly impacted the speed at which new disease genes are identified. In the last year alone, six studies have used exome sequencing to identify new genes involved in intellectual disability, a genetically heterogeneous condition affecting 1-3% of the population. These studies encompass the full gamut of modes of inheritance and phenotypic presentation, including syndromic and non-syndromic conditions, sporadic and familial cases, and dominant and recessive inheritance patterns. Because different disease presentations require different approaches to gene discovery, studies of intellectual disability provide a nearly comprehensive showcase of strategies for exome-driven gene discovery. Despite these successes, the etiology of ~60% of cases of intellectual disability remains unknown. The application of exome sequencing to the clinical diagnosis of intellectual disability in the near future will ultimately reduce the number of idiopathic cases and provide a rich source of sequence variation for the identification of new intellectual disability genes.
© 2011 John Wiley & Sons A/S.

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Year:  2011        PMID: 21627642      PMCID: PMC4343531          DOI: 10.1111/j.1399-0004.2011.01720.x

Source DB:  PubMed          Journal:  Clin Genet        ISSN: 0009-9163            Impact factor:   4.438


  62 in total

1.  Truncating neurotrypsin mutation in autosomal recessive nonsyndromic mental retardation.

Authors:  Florence Molinari; Marlene Rio; Virginia Meskenaite; Férechté Encha-Razavi; Joelle Augé; Delphine Bacq; Sylvain Briault; Michel Vekemans; Arnold Munnich; Tania Attié-Bitach; Peter Sonderegger; Laurence Colleaux
Journal:  Science       Date:  2002-11-29       Impact factor: 47.728

Review 2.  The epidemiology of mental retardation: challenges and opportunities in the new millennium.

Authors:  Helen Leonard; Xingyan Wen
Journal:  Ment Retard Dev Disabil Res Rev       Date:  2002

3.  A mutation in a novel ATP-dependent Lon protease gene in a kindred with mild mental retardation.

Authors:  Joseph J Higgins; Joanna Pucilowska; Roni Q Lombardi; John P Rooney
Journal:  Neurology       Date:  2004-11-23       Impact factor: 9.910

4.  The renaming of mental retardation: understanding the change to the term intellectual disability.

Authors:  Robert L Schalock; Ruth A Luckasson; Karrie A Shogren; Sharon Borthwick-Duffy; Val Bradley; Wil H E Buntinx; David L Coulter; Ellis M Craig; Sharon C Gomez; Yves Lachapelle; Alya Reeve; Martha E Snell; Scott Spreat; Marc J Tassé; James R Thompson; Miguel A Verdugo; Michael L Wehmeyer; Mark H Yeager
Journal:  Intellect Dev Disabil       Date:  2007-04

5.  Diagnostic genome profiling in mental retardation.

Authors:  Bert B A de Vries; Rolph Pfundt; Martijn Leisink; David A Koolen; Lisenka E L M Vissers; Irene M Janssen; Simon van Reijmersdal; Willy M Nillesen; Erik H L P G Huys; Nicole de Leeuw; Dominique Smeets; Erik A Sistermans; Ton Feuth; Conny M A van Ravenswaaij-Arts; Ad Geurts van Kessel; Eric F P M Schoenmakers; Han G Brunner; Joris A Veltman
Journal:  Am J Hum Genet       Date:  2005-08-30       Impact factor: 11.025

6.  The CC2D1A, a member of a new gene family with C2 domains, is involved in autosomal recessive non-syndromic mental retardation.

Authors:  L Basel-Vanagaite; R Attia; M Yahav; R J Ferland; L Anteki; C A Walsh; T Olender; R Straussberg; N Magal; E Taub; V Drasinover; A Alkelai; D Bercovich; G Rechavi; A J Simon; M Shohat
Journal:  J Med Genet       Date:  2005-07-20       Impact factor: 6.318

7.  ASPM is a major determinant of cerebral cortical size.

Authors:  Jacquelyn Bond; Emma Roberts; Ganesh H Mochida; Daniel J Hampshire; Sheila Scott; Jonathan M Askham; Kelly Springell; Meera Mahadevan; Yanick J Crow; Alexander F Markham; Christopher A Walsh; C Geoffrey Woods
Journal:  Nat Genet       Date:  2002-09-23       Impact factor: 38.330

8.  Economic costs associated with mental retardation, cerebral palsy, hearing loss, and vision impairment--United States, 2003.

Authors: 
Journal:  MMWR Morb Mortal Wkly Rep       Date:  2004-01-30       Impact factor: 17.586

9.  Joubert syndrome 2 (JBTS2) in Ashkenazi Jews is associated with a TMEM216 mutation.

Authors:  Simon Edvardson; Avraham Shaag; Shamir Zenvirt; Yaniv Erlich; Gregory J Hannon; Alan L Shanske; John Moshe Gomori; Joseph Ekstein; Orly Elpeleg
Journal:  Am J Hum Genet       Date:  2009-12-31       Impact factor: 11.025

Review 10.  Exome sequencing: the sweet spot before whole genomes.

Authors:  Jamie K Teer; James C Mullikin
Journal:  Hum Mol Genet       Date:  2010-08-12       Impact factor: 6.150

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  24 in total

1.  Identification and In Silico Characterization of a Novel Point Mutation within the Phosphatidylinositol Glycan Anchor Biosynthesis Class G Gene in an Iranian Family with Intellectual Disability.

Authors:  Negin Parsamanesh; Hossein Safarpour; Shokoofe Etesam; Aazam Ahmadi Shadmehri; Ebrahim Miri-Moghaddam
Journal:  J Mol Neurosci       Date:  2019-08-14       Impact factor: 3.444

2.  Loss of function mutation in glutamic pyruvate transaminase 2 (GPT2) causes developmental encephalopathy.

Authors:  Katrina Celis; Scott Shuldiner; Eden V Haverfield; Joshua Cappell; Rongze Yang; Da-Wei Gong; Wendy K Chung
Journal:  J Inherit Metab Dis       Date:  2015-03-03       Impact factor: 4.982

3.  Network- and attribute-based classifiers can prioritize genes and pathways for autism spectrum disorders and intellectual disability.

Authors:  Yan Kou; Catalina Betancur; Huilei Xu; Joseph D Buxbaum; Avi Ma'ayan
Journal:  Am J Med Genet C Semin Med Genet       Date:  2012-04-12       Impact factor: 3.908

4.  Trio-based exome sequencing reveals a high rate of the de novo variants in intellectual disability.

Authors:  Alejandro J Brea-Fernández; Miriam Álvarez-Barona; Jorge Amigo; María Tubío-Fungueiriño; Pilar Caamaño; Montserrat Fernández-Prieto; Francisco Barros; Silvia De Rubeis; Joseph Buxbaum; Ángel Carracedo
Journal:  Eur J Hum Genet       Date:  2022-03-23       Impact factor: 5.351

Review 5.  The Ubiquitin System: a Regulatory Hub for Intellectual Disability and Autism Spectrum Disorder.

Authors:  Stephen A Wood; Michael Piper; Maria A Kasherman; Susitha Premarathne; Thomas H J Burne
Journal:  Mol Neurobiol       Date:  2020-01-23       Impact factor: 5.590

Review 6.  The future of genomics for developmentalists.

Authors:  Robert Plomin; Michael A Simpson
Journal:  Dev Psychopathol       Date:  2013-11

7.  The genetic cause of intellectual deficiency and/or congenital malformations in two parental reciprocal translocation carriers and implications for assisted reproduction.

Authors:  Dehua Cheng; Shimin Yuan; Liang Hu; Duo Yi; Keli Luo; Fei Gong; Changfu Lu; Guangxiu Lu; Ge Lin; Yue-Qiu Tan
Journal:  J Assist Reprod Genet       Date:  2020-10-22       Impact factor: 3.412

Review 8.  Future possibilities in migraine genetics.

Authors:  Laura Aviaja Rudkjobing; Ann-Louise Esserlind; Jes Olesen
Journal:  J Headache Pain       Date:  2012-09-07       Impact factor: 7.277

9.  Multilocus loss of DNA methylation in individuals with mutations in the histone H3 lysine 4 demethylase KDM5C.

Authors:  Daria Grafodatskaya; Barian H Y Chung; Darci T Butcher; Andrei L Turinsky; Sarah J Goodman; Sana Choufani; Yi-An Chen; Youliang Lou; Chunhua Zhao; Rageen Rajendram; Fatima E Abidi; Cindy Skinner; James Stavropoulos; Carolyn A Bondy; Jill Hamilton; Shoshana Wodak; Stephen W Scherer; Charles E Schwartz; Rosanna Weksberg
Journal:  BMC Med Genomics       Date:  2013-01-28       Impact factor: 3.063

10.  WEP: a high-performance analysis pipeline for whole-exome data.

Authors:  Mattia D'Antonio; Paolo D'Onorio De Meo; Daniele Paoletti; Berardino Elmi; Matteo Pallocca; Nico Sanna; Ernesto Picardi; Graziano Pesole; Tiziana Castrignanò
Journal:  BMC Bioinformatics       Date:  2013-04-22       Impact factor: 3.169

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