Literature DB >> 21626299

Analysis of DNA methylation in human BK virus.

Chi-Fang Chang1, Meilin Wang, Chiung-Yao Fang, Pei-Lain Chen, Shu-Fen Wu, Michael W Y Chan, Deching Chang.   

Abstract

Human BK virus may cause nephropathy due to viral replication in patients who have undergone renal transplantation. However, the mechanism regulating replication of BKV is still not clear. Previous studies have suggested that epigenetic modifications may play a crucial role in virus replication. In this study, the DNA methylation profiles of five CpG sites located within the promoter/enhancer regions and nine CpG sites located within the early and late coding regions of the replicating BKV genome were investigated. BKV genomic DNA from mature virions and from the early and late phases of replicating BKV were examined for DNA methylation by bisulfite sequencing that covered 14 CpG sites. Our results showed that none of the examined BKV DNA from the various different stages of replication was methylated. This is the first report to analyze the methylation of BKV genomic DNA during viral replication. The results seem to indicate that methylation is not involved in regulation of BKV replication.

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Year:  2011        PMID: 21626299     DOI: 10.1007/s11262-011-0627-3

Source DB:  PubMed          Journal:  Virus Genes        ISSN: 0920-8569            Impact factor:   2.332


  60 in total

1.  CpG methylation directly inhibits binding of the human papillomavirus type 16 E2 protein to specific DNA sequences.

Authors:  A Thain; O Jenkins; A R Clarke; K Gaston
Journal:  J Virol       Date:  1996-10       Impact factor: 5.103

2.  New human papovavirus (B.K.) isolated from urine after renal transplantation.

Authors:  S D Gardner; A M Field; D V Coleman; B Hulme
Journal:  Lancet       Date:  1971-06-19       Impact factor: 79.321

3.  SV40-encoded microRNAs regulate viral gene expression and reduce susceptibility to cytotoxic T cells.

Authors:  Christopher S Sullivan; Adam T Grundhoff; Satvir Tevethia; James M Pipas; Don Ganem
Journal:  Nature       Date:  2005-06-02       Impact factor: 49.962

4.  Aberrant epigenetic modifications in hepatocarcinogenesis induced by hepatitis B virus X protein.

Authors:  In Young Park; Bo Hwa Sohn; Eunsil Yu; Dong Jin Suh; Young-Hwa Chung; Je-Ho Lee; Stefan J Surzycki; Young Ik Lee
Journal:  Gastroenterology       Date:  2007-01-25       Impact factor: 22.682

Review 5.  Aberrant DNA methylation as a cancer-inducing mechanism.

Authors:  Manel Esteller
Journal:  Annu Rev Pharmacol Toxicol       Date:  2005       Impact factor: 13.820

6.  The minimal replicator element of the Kaposi's sarcoma-associated herpesvirus terminal repeat supports replication in a semiconservative and cell-cycle-dependent manner.

Authors:  Subhash C Verma; Tathagata Choudhuri; Erle S Robertson
Journal:  J Virol       Date:  2006-12-06       Impact factor: 5.103

7.  Methylation of simian virus 40 Hpa II site affects late, but not early, viral gene expression.

Authors:  A Fradin; J L Manley; C L Prives
Journal:  Proc Natl Acad Sci U S A       Date:  1982-09       Impact factor: 11.205

8.  Merkel cell polyomavirus encodes a microRNA with the ability to autoregulate viral gene expression.

Authors:  Gil Ju Seo; Chun Jung Chen; Christopher S Sullivan
Journal:  Virology       Date:  2008-11-30       Impact factor: 3.616

9.  Specific histone tail modification and not DNA methylation is a determinant of herpes simplex virus type 1 latent gene expression.

Authors:  Nicole J Kubat; Robert K Tran; Peterjon McAnany; David C Bloom
Journal:  J Virol       Date:  2004-02       Impact factor: 5.103

10.  Patterns of methylation of polyomavirus DNA in polyoma-transformed rat cells.

Authors:  H Manor
Journal:  J Virol       Date:  1985-12       Impact factor: 5.103

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  4 in total

Review 1.  Viral epigenetics.

Authors:  Barry I Milavetz; Lata Balakrishnan
Journal:  Methods Mol Biol       Date:  2015

2.  Unusually high incidence of polyomavirus JC infection in the higher grade of colorectal cancer tissues in Taiwan.

Authors:  Chun-Liang Tung; Chiung-Yao Fang; Chuan-Yin Fang; San-Yuan Chen; Bo-Xiu Hsiao; Hsin-Yi Huang; Yi-Ju Chen
Journal:  Eur J Med Res       Date:  2022-07-20       Impact factor: 4.981

3.  Depletion of CpG Dinucleotides in Papillomaviruses and Polyomaviruses: A Role for Divergent Evolutionary Pressures.

Authors:  Mohita Upadhyay; Perumal Vivekanandan
Journal:  PLoS One       Date:  2015-11-06       Impact factor: 3.240

Review 4.  Regulation of Polyomavirus Transcription by Viral and Cellular Factors.

Authors:  June F Yang; Jianxin You
Journal:  Viruses       Date:  2020-09-24       Impact factor: 5.048

  4 in total

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