Literature DB >> 21625860

Selection of reference genes for normalization of qRT-PCR analysis of differentially expressed genes in soybean exposed to cadmium.

Yi Wang1, Kangfu Yu, Vaino Poysa, Chun Shi, Yonghong Zhou.   

Abstract

Accurate normalization of gene expression with qRT-PCR depends on the use of appropriate reference genes (RGs) for the species under a given set of experimental conditions. Multiple RGs for gene expression analysis of soybean exposed to heavy metal stress treatment have not been reported in the literature. In this study, we evaluated the expression stability of ten candidate RGs in leaves, roots and stems of two soybean cultivars exposed to cadmium (Cd). Based on the geNorm and NormFinder analysis, ACT3, PP2A, ELF1B and F-box were the most stable RGs in these gene expression studies. In contrast, G6PD, UBC2, TUB, and ELF1A were the most variable ones and should not be used as RGs in these experimental conditions.

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Year:  2011        PMID: 21625860     DOI: 10.1007/s11033-011-0897-9

Source DB:  PubMed          Journal:  Mol Biol Rep        ISSN: 0301-4851            Impact factor:   2.316


  26 in total

1.  PLANT PROTEIN PHOSPHATASES.

Authors:  Robert D. Smith; John C. Walker
Journal:  Annu Rev Plant Physiol Plant Mol Biol       Date:  1996-06

2.  Reference gene selection for quantitative real-time polymerase chain reaction in Populus.

Authors:  Meng Xu; Bo Zhang; Xiaohua Su; Shougong Zhang; Minren Huang
Journal:  Anal Biochem       Date:  2010-09-19       Impact factor: 3.365

3.  Selection of reference genes in Hedysarum coronarium under various stresses and stages of development.

Authors:  E M Cordoba; J V Die; C I González-Verdejo; S Nadal; B Román
Journal:  Anal Biochem       Date:  2010-10-29       Impact factor: 3.365

4.  Distinct signalling pathways for induction of MAP kinase activities by cadmium and copper in rice roots.

Authors:  Chuan-Ming Yeh; Pei-Shan Chien; Hao-Jen Huang
Journal:  J Exp Bot       Date:  2007-01-27       Impact factor: 6.992

5.  Housekeeping gene selection for real-time RT-PCR normalization in potato during biotic and abiotic stress.

Authors:  Nathalie Nicot; Jean-François Hausman; Lucien Hoffmann; Danièle Evers
Journal:  J Exp Bot       Date:  2005-09-27       Impact factor: 6.992

6.  Evidence that glyceraldehyde-3-phosphate dehydrogenase is involved in age-induced apoptosis in mature cerebellar neurons in culture.

Authors:  R Ishitani; K Sunaga; A Hirano; P Saunders; N Katsube; D M Chuang
Journal:  J Neurochem       Date:  1996-03       Impact factor: 5.372

7.  Mapping and validation of simple sequence repeat markers linked to a major gene controlling seed cadmium accumulation in soybean [Glycine max (L.) Merr].

Authors:  Souframanien Jegadeesan; Kangfu Yu; Vaino Poysa; Eugene Gawalko; Malcolm J Morrison; Chun Shi; Elroy Cober
Journal:  Theor Appl Genet       Date:  2010-03-12       Impact factor: 5.699

8.  Sequence-specific binding of transfer RNA by glyceraldehyde-3-phosphate dehydrogenase.

Authors:  R Singh; M R Green
Journal:  Science       Date:  1993-01-15       Impact factor: 47.728

9.  Evaluation of putative reference genes for gene expression normalization in soybean by quantitative real-time RT-PCR.

Authors:  Ruibo Hu; Chengming Fan; Hongyu Li; Qingzhu Zhang; Yong-Fu Fu
Journal:  BMC Mol Biol       Date:  2009-09-28       Impact factor: 2.946

10.  Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes.

Authors:  Jo Vandesompele; Katleen De Preter; Filip Pattyn; Bruce Poppe; Nadine Van Roy; Anne De Paepe; Frank Speleman
Journal:  Genome Biol       Date:  2002-06-18       Impact factor: 13.583

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  17 in total

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Authors:  Qi Yang; Jiajia Yin; Gao Li; Liwang Qi; Feiyun Yang; Ruigang Wang; Guojing Li
Journal:  Mol Biol Rep       Date:  2014-01-23       Impact factor: 2.316

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Authors:  Kátia D C Saraiva; Dirce Fernandes de Melo; Vanessa D Morais; Ilka M Vasconcelos; José H Costa
Journal:  Plant Cell Rep       Date:  2014-05-13       Impact factor: 4.570

3.  Selection of reference genes for quantitative reverse-transcription polymerase chain reaction normalization in Brassica napus under various stress conditions.

Authors:  Zheng Wang; Yu Chen; Hedi Fang; Haifeng Shi; Keping Chen; Zhiyan Zhang; Xiaoli Tan
Journal:  Mol Genet Genomics       Date:  2014-04-27       Impact factor: 3.291

4.  Cadmium treatment alters the expression of five genes at the Cda1 locus in two soybean cultivars [Glycine max (L.) Merr].

Authors:  Yi Wang; Xue Xiao; Tiequan Zhang; Houyang Kang; Jian Zeng; Xing Fan; Lina Sha; Haiqin Zhang; Kangfu Yu; Yonghong Zhou
Journal:  ScientificWorldJournal       Date:  2014-06-02

5.  Normalization for Relative Quantification of mRNA and microRNA in Soybean Exposed to Various Abiotic Stresses.

Authors:  Weican Liu; Yu Deng; Yonggang Zhou; Huan Chen; Yuanyuan Dong; Nan Wang; Xiaowei Li; Aysha Jameel; He Yang; Min Zhang; Kai Chen; Fawei Wang; Haiyan Li
Journal:  PLoS One       Date:  2016-05-13       Impact factor: 3.240

6.  Acid phosphatase gene GmHAD1 linked to low phosphorus tolerance in soybean, through fine mapping.

Authors:  Zhandong Cai; Yanbo Cheng; Peiqi Xian; Qibin Ma; Ke Wen; Qiuju Xia; Gengyun Zhang; Hai Nian
Journal:  Theor Appl Genet       Date:  2018-05-12       Impact factor: 5.699

7.  Avoiding pitfalls of internal controls: validation of reference genes for analysis by qRT-PCR and Western blot throughout rat retinal development.

Authors:  Maurício Rocha-Martins; Brian Njaine; Mariana S Silveira
Journal:  PLoS One       Date:  2012-08-20       Impact factor: 3.240

8.  Identification and comparative analysis of cadmium tolerance-associated miRNAs and their targets in two soybean genotypes.

Authors:  Xiaolong Fang; Yunyun Zhao; Qibin Ma; Yian Huang; Peng Wang; Jie Zhang; Hai Nian; Cunyi Yang
Journal:  PLoS One       Date:  2013-12-10       Impact factor: 3.240

9.  Evaluation and validation of reference genes for normalization of quantitative real-time PCR based gene expression studies in peanut.

Authors:  Dumbala Srinivas Reddy; Pooja Bhatnagar-Mathur; Katamreddy Sri Cindhuri; Kiran K Sharma
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10.  Genome-wide characterization of soybean P 1B -ATPases gene family provides functional implications in cadmium responses.

Authors:  Xiaolong Fang; Lei Wang; Xiaojuan Deng; Peng Wang; Qibin Ma; Hai Nian; Yingxiang Wang; Cunyi Yang
Journal:  BMC Genomics       Date:  2016-05-20       Impact factor: 3.969

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