Literature DB >> 21624343

A robust RNA integrity-preserving staining protocol for laser capture microdissection of endometrial cancer tissue.

Michele Cummings1, Ciara V McGinley, Nafisa Wilkinson, Sarah L Field, Sean R Duffy, Nicolas M Orsi.   

Abstract

Laser capture microdissection of frozen tissue sections allows homogeneous cell populations to be isolated for expression profiling. However, this requires striking a balance between retaining adequate morphology for accurate microdissection and maintaining RNA integrity. Various staining protocols were applied to frozen endometrial carcinoma tissue sections. Although alcohol-based methods were superior to aqueous stains for maintaining RNA integrity, they suffered from irreproducible staining intensity. We developed a modified alcohol-based, buffered cresyl violet staining protocol that provides reproducible staining with minimal RNA degradation suitable for tissues with moderate to high levels of intrinsic RNase activity.
Copyright © 2011 Elsevier Inc. All rights reserved.

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Year:  2011        PMID: 21624343     DOI: 10.1016/j.ab.2011.05.009

Source DB:  PubMed          Journal:  Anal Biochem        ISSN: 0003-2697            Impact factor:   3.365


  13 in total

1.  Integrated chromatin immunoprecipitation sequencing and microarray analysis identifies FOXA2 target genes in the glands of the mouse uterus.

Authors:  Justyna Filant; John P Lydon; Thomas E Spencer
Journal:  FASEB J       Date:  2013-09-11       Impact factor: 5.191

2.  Could perturbed fetal development of the ovary contribute to the development of polycystic ovary syndrome in later life?

Authors:  Monica D Hartanti; Roseanne Rosario; Katja Hummitzsch; Nicole A Bastian; Nicholas Hatzirodos; Wendy M Bonner; Rosemary A Bayne; Helen F Irving-Rodgers; Richard A Anderson; Raymond J Rodgers
Journal:  PLoS One       Date:  2020-02-20       Impact factor: 3.240

3.  Recovery of high-quality RNA from laser capture microdissected human and rodent pancreas.

Authors:  Alexandra E Butler; Aleksey V Matveyenko; David Kirakossian; Johanna Park; Tatyana Gurlo; Peter C Butler
Journal:  J Histotechnol       Date:  2016-05-10       Impact factor: 0.714

4.  Optimization of Laser-Capture Microdissection for the Isolation of Enteric Ganglia from Fresh-Frozen Human Tissue.

Authors:  Aaron A May-Zhang; Karen K Deal; E Michelle Southard-Smith
Journal:  J Vis Exp       Date:  2018-06-14       Impact factor: 1.355

5.  Laser Capture Microdissection of Highly Pure Trabecular Meshwork from Mouse Eyes for Gene Expression Analysis.

Authors:  Caleb Sutherland; Yu Wang; Robert V Brown; Julie Foley; Beth Mahler; Kyathanahalli S Janardhan; Ramesh C Kovi; Anton M Jetten
Journal:  J Vis Exp       Date:  2018-06-03       Impact factor: 1.355

6.  Cell-specific transcriptional profiling reveals candidate mechanisms regulating development and function of uterine epithelia in mice.

Authors:  Justyna Filant; Thomas E Spencer
Journal:  Biol Reprod       Date:  2013-10-10       Impact factor: 4.285

7.  Circadian Gene Profiling in Laser Capture Microdissected Mouse Club Cells.

Authors:  Zhenguang Zhang; Andrew Loudon
Journal:  Bio Protoc       Date:  2020-04-20

8.  Laser capture microdissection enables cellular and molecular studies of tooth root development.

Authors:  Jian-Xun Sun; Orapin V Horst; Roger Bumgarner; Bryce Lakely; Martha J Somerman; Hai Zhang
Journal:  Int J Oral Sci       Date:  2012-03-16       Impact factor: 6.344

9.  Factors affecting the yield of microRNAs from laser microdissectates of formalin-fixed tissue sections.

Authors:  Santosh Kumar Patnaik; Eric Kannisto; Sai Yendamuri
Journal:  BMC Res Notes       Date:  2012-01-19

10.  Comparison of RNA extraction kits and histological stains for laser capture microdissected prostate tissue.

Authors:  Kimberley Kolijn; Geert J L H van Leenders
Journal:  BMC Res Notes       Date:  2016-01-07
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