Literature DB >> 21623344

An RNA-protein complex links enhanced nuclear 3' processing with cytoplasmic mRNA stabilization.

Xinjun Ji1, Jian Kong, Stephen A Liebhaber.   

Abstract

Post-transcriptional controls are critical to gene regulation. These controls are frequently based on sequence-specific binding of trans-acting proteins to cis-acting motifs on target RNAs. Prior studies have revealed that the KH-domain protein, αCP, binds to a 3' UTR C-rich motif of hα-globin mRNA and contributes to its cytoplasmic stability. Here, we report that this 3' UTR αCP complex regulates the production of mature α-globin mRNA by enhancing 3' processing of the hα-globin transcript. We go on to demonstrate that this nuclear activity reflects enhancement of both the cleavage and the polyadenylation reactions and that αCP interacts in vivo with core components of the 3' processing complex. Consistent with its nuclear processing activity, our studies reveal that αCP assembles co-transcriptionally at the hα-globin chromatin locus and that this loading is selectively enriched at the 3' terminus of the gene. The demonstrated linkage of nuclear processing with cytoplasmic stabilization via a common RNA-protein complex establishes a basis for integration of sequential controls critical to robust and sustained expression of a target mRNA.

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Year:  2011        PMID: 21623344      PMCID: PMC3155305          DOI: 10.1038/emboj.2011.171

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  45 in total

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Authors:  Jian Kong; Stephen A Liebhaber
Journal:  Nat Struct Mol Biol       Date:  2007-06-17       Impact factor: 15.369

2.  Specific trans-acting proteins interact with auxiliary RNA polyadenylation elements in the COX-2 3'-UTR.

Authors:  Tyra Hall-Pogar; Songchun Liang; Lisa K Hague; Carol S Lutz
Journal:  RNA       Date:  2007-05-16       Impact factor: 4.942

3.  ChIP-chip for genome-wide analysis of protein binding in mammalian cells.

Authors:  Tae Hoon Kim; Leah O Barrera; Bing Ren
Journal:  Curr Protoc Mol Biol       Date:  2007-07

Review 4.  Protein factors in pre-mRNA 3'-end processing.

Authors:  C R Mandel; Y Bai; L Tong
Journal:  Cell Mol Life Sci       Date:  2008-04       Impact factor: 9.261

5.  Transcription termination by nuclear RNA polymerases.

Authors:  Patricia Richard; James L Manley
Journal:  Genes Dev       Date:  2009-06-01       Impact factor: 11.361

Review 6.  Progression through the RNA polymerase II CTD cycle.

Authors:  Stephen Buratowski
Journal:  Mol Cell       Date:  2009-11-25       Impact factor: 17.970

7.  A core complex of CPSF73, CPSF100, and Symplekin may form two different cleavage factors for processing of poly(A) and histone mRNAs.

Authors:  Kelly D Sullivan; Mindy Steiniger; William F Marzluff
Journal:  Mol Cell       Date:  2009-05-15       Impact factor: 17.970

8.  Regulation of ARE transcript 3' end processing by the yeast Cth2 mRNA decay factor.

Authors:  Manoël Prouteau; Marie-Claire Daugeron; Bertrand Séraphin
Journal:  EMBO J       Date:  2008-10-16       Impact factor: 11.598

9.  A physical and functional link between splicing factors promotes pre-mRNA 3' end processing.

Authors:  Stefania Millevoi; Adrien Decorsière; Clarisse Loulergue; Jason Iacovoni; Sandra Bernat; Michael Antoniou; Stéphan Vagner
Journal:  Nucleic Acids Res       Date:  2009-06-08       Impact factor: 16.971

Review 10.  RNA-binding proteins and post-transcriptional gene regulation.

Authors:  Tina Glisovic; Jennifer L Bachorik; Jeongsik Yong; Gideon Dreyfuss
Journal:  FEBS Lett       Date:  2008-03-13       Impact factor: 4.124

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  21 in total

1.  α-Globin pre-mRNA splicing, revisited.

Authors:  John G Conboy
Journal:  Blood       Date:  2019-05-23       Impact factor: 22.113

2.  Poly(C)-Binding Protein Pcbp2 Enables Differentiation of Definitive Erythropoiesis by Directing Functional Splicing of the Runx1 Transcript.

Authors:  Louis R Ghanem; Andrew Kromer; Ian M Silverman; Xinjun Ji; Matthew Gazzara; Nhu Nguyen; Gabrielle Aguilar; Massimo Martinelli; Yoseph Barash; Stephen A Liebhaber
Journal:  Mol Cell Biol       Date:  2018-07-30       Impact factor: 4.272

3.  A cytosine-rich splice regulatory determinant enforces functional processing of the human α-globin gene transcript.

Authors:  Xinjun Ji; Jesse Humenik; Stephen A Liebhaber
Journal:  Blood       Date:  2019-03-04       Impact factor: 22.113

Review 4.  Mechanisms and consequences of alternative polyadenylation.

Authors:  Dafne Campigli Di Giammartino; Kensei Nishida; James L Manley
Journal:  Mol Cell       Date:  2011-09-16       Impact factor: 17.970

5.  αCP Poly(C) binding proteins act as global regulators of alternative polyadenylation.

Authors:  Xinjun Ji; Ji Wan; Melanie Vishnu; Yi Xing; Stephen A Liebhaber
Journal:  Mol Cell Biol       Date:  2013-04-29       Impact factor: 4.272

6.  αCP binding to a cytosine-rich subset of polypyrimidine tracts drives a novel pathway of cassette exon splicing in the mammalian transcriptome.

Authors:  Xinjun Ji; Juw Won Park; Emad Bahrami-Samani; Lan Lin; Christopher Duncan-Lewis; Gordon Pherribo; Yi Xing; Stephen A Liebhaber
Journal:  Nucleic Acids Res       Date:  2016-02-20       Impact factor: 16.971

7.  Specific enrichment of the RNA-binding proteins PCBP1 and PCBP2 in chief cells of the murine gastric mucosa.

Authors:  Louis R Ghanem; Priya Chatterji; Stephen A Liebhaber
Journal:  Gene Expr Patterns       Date:  2014-01-28       Impact factor: 1.224

Review 8.  TGF-beta signaling in cancer: post-transcriptional regulation of EMT via hnRNP E1.

Authors:  Breege V Howley; Philip H Howe
Journal:  Cytokine       Date:  2018-02-01       Impact factor: 3.861

Review 9.  Molecular modulators of the circadian clock: lessons from flies and mice.

Authors:  Lucia Mendoza-Viveros; Pascale Bouchard-Cannon; Sara Hegazi; Arthur H Cheng; Stephen Pastore; Hai-Ying Mary Cheng
Journal:  Cell Mol Life Sci       Date:  2016-09-29       Impact factor: 9.261

10.  The Poly(C) Binding Protein Pcbp2 and Its Retrotransposed Derivative Pcbp1 Are Independently Essential to Mouse Development.

Authors:  Louis R Ghanem; Andrew Kromer; Ian M Silverman; Priya Chatterji; Elizabeth Traxler; Alfredo Penzo-Mendez; Mitchell J Weiss; Ben Z Stanger; Stephen A Liebhaber
Journal:  Mol Cell Biol       Date:  2015-11-02       Impact factor: 4.272

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