Literature DB >> 21622799

Diversity, abundance, and potential activity of nitrifying and nitrate-reducing microbial assemblages in a subglacial ecosystem.

Eric S Boyd1, Rachel K Lange, Andrew C Mitchell, Jeff R Havig, Trinity L Hamilton, Melissa J Lafrenière, Everett L Shock, John W Peters, Mark Skidmore.   

Abstract

Subglacial sediments sampled from beneath Robertson Glacier (RG), Alberta, Canada, were shown to harbor diverse assemblages of potential nitrifiers, nitrate reducers, and diazotrophs, as assessed by amoA, narG, and nifH gene biomarker diversity. Although archaeal amoA genes were detected, they were less abundant and less diverse than bacterial amoA, suggesting that bacteria are the predominant nitrifiers in RG sediments. Maximum nitrification and nitrate reduction rates in microcosms incubated at 4°C were 280 and 18.5 nmol of N per g of dry weight sediment per day, respectively, indicating the potential for these processes to occur in situ. Geochemical analyses of subglacial sediment pore waters and bulk subglacial meltwaters revealed low concentrations of inorganic and organic nitrogen compounds. These data, when coupled with a C/N atomic ratio of dissolved organic matter in subglacial pore waters of ~210, indicate that the sediment communities are N limited. This may reflect the combined biological activities of organic N mineralization, nitrification, and nitrate reduction. Despite evidence of N limitation and the detection of nifH, we were unable to detect biological nitrogen fixation activity in subglacial sediments. Collectively, the results presented here suggest a role for nitrification and nitrate reduction in sustaining microbial life in subglacial environments. Considering that ice currently covers 11% of the terrestrial landmass and has covered significantly greater portions of Earth at times in the past, the demonstration of nitrification and nitrate reduction in subglacial environments furthers our understanding of the potential for these environments to contribute to global biogeochemical cycles on glacial-interglacial timescales.

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Year:  2011        PMID: 21622799      PMCID: PMC3147365          DOI: 10.1128/AEM.00376-11

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  45 in total

Review 1.  Nitrogenase gene diversity and microbial community structure: a cross-system comparison.

Authors:  Jonathan P Zehr; Bethany D Jenkins; Steven M Short; Grieg F Steward
Journal:  Environ Microbiol       Date:  2003-07       Impact factor: 5.491

2.  Novel genes for nitrite reductase and Amo-related proteins indicate a role of uncultivated mesophilic crenarchaeota in nitrogen cycling.

Authors:  Alexander H Treusch; Sven Leininger; Arnulf Kletzin; Stephan C Schuster; Hans-Peter Klenk; Christa Schleper
Journal:  Environ Microbiol       Date:  2005-12       Impact factor: 5.491

3.  Comparison of microbial community compositions of two subglacial environments reveals a possible role for microbes in chemical weathering processes.

Authors:  Mark Skidmore; Suzanne P Anderson; Martin Sharp; Julia Foght; Brian D Lanoil
Journal:  Appl Environ Microbiol       Date:  2005-11       Impact factor: 4.792

4.  Relative abundances of proteobacterial membrane-bound and periplasmic nitrate reductases in selected environments.

Authors:  D Bru; A Sarr; L Philippot
Journal:  Appl Environ Microbiol       Date:  2007-07-13       Impact factor: 4.792

5.  The influence of soil pH on the diversity, abundance and transcriptional activity of ammonia oxidizing archaea and bacteria.

Authors:  Graeme W Nicol; Sven Leininger; Christa Schleper; James I Prosser
Journal:  Environ Microbiol       Date:  2008-08-14       Impact factor: 5.491

6.  Environmental constraints underpin the distribution and phylogenetic diversity of nifH in the Yellowstone geothermal complex.

Authors:  Trinity L Hamilton; Eric S Boyd; John W Peters
Journal:  Microb Ecol       Date:  2011-03-02       Impact factor: 4.552

7.  Application of real-time PCR to study effects of ammonium on population size of ammonia-oxidizing bacteria in soil.

Authors:  Yutaka Okano; Krassimira R Hristova; Christian M Leutenegger; Louise E Jackson; R Ford Denison; Binyam Gebreyesus; David Lebauer; Kate M Scow
Journal:  Appl Environ Microbiol       Date:  2004-02       Impact factor: 4.792

8.  Isolation, characterization, and ecology of sulfur-respiring crenarchaea inhabiting acid-sulfate-chloride-containing geothermal springs in Yellowstone National Park.

Authors:  Eric S Boyd; Robert A Jackson; Gem Encarnacion; James A Zahn; Trevor Beard; William D Leavitt; Yundan Pi; Chuanlun L Zhang; Ann Pearson; Gill G Geesey
Journal:  Appl Environ Microbiol       Date:  2007-08-24       Impact factor: 4.792

9.  Functionally distinct communities of ammonia-oxidizing bacteria along an estuarine salinity gradient.

Authors:  Anne E Bernhard; Jane Tucker; Anne E Giblin; David A Stahl
Journal:  Environ Microbiol       Date:  2007-06       Impact factor: 5.491

10.  Changes in benthic denitrification, nitrate ammonification, and anammox process rates and nitrate and nitrite reductase gene abundances along an estuarine nutrient gradient (the Colne estuary, United Kingdom).

Authors:  Liang F Dong; Cindy J Smith; Sokratis Papaspyrou; Andrew Stott; A Mark Osborn; David B Nedwell
Journal:  Appl Environ Microbiol       Date:  2009-03-20       Impact factor: 4.792

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  29 in total

1.  Seasonal changes in nitrogen-cycle gene abundances and in bacterial communities in acidic forest soils.

Authors:  Jaejoon Jung; Jinki Yeom; Jiwon Han; Jisun Kim; Woojun Park
Journal:  J Microbiol       Date:  2012-06-30       Impact factor: 3.422

Review 2.  Microbial ecology of the cryosphere: sea ice and glacial habitats.

Authors:  Antje Boetius; Alexandre M Anesio; Jody W Deming; Jill A Mikucki; Josephine Z Rapp
Journal:  Nat Rev Microbiol       Date:  2015-09-07       Impact factor: 60.633

3.  Contributions of ancestral inter-species recombination to the genetic diversity of extant Streptomyces lineages.

Authors:  Cheryl P Andam; Mallory J Choudoir; Anh Vinh Nguyen; Han Sol Park; Daniel H Buckley
Journal:  ISME J       Date:  2016-02-05       Impact factor: 10.302

4.  The dynamic bacterial communities of a melting High Arctic glacier snowpack.

Authors:  Katherina Hell; Arwyn Edwards; Jakub Zarsky; Sabine M Podmirseg; Susan Girdwood; Justin A Pachebat; Heribert Insam; Birgit Sattler
Journal:  ISME J       Date:  2013-04-04       Impact factor: 10.302

5.  Chemolithotrophic primary production in a subglacial ecosystem.

Authors:  Eric S Boyd; Trinity L Hamilton; Jeff R Havig; Mark L Skidmore; Everett L Shock
Journal:  Appl Environ Microbiol       Date:  2014-08-01       Impact factor: 4.792

6.  Effects of seasonal temperature variation on nitrification, anammox process, and bacteria involved in a pilot-scale constructed wetland.

Authors:  Ling Wang; Tian Li
Journal:  Environ Sci Pollut Res Int       Date:  2014-09-30       Impact factor: 4.223

7.  H2 Metabolism revealed by metagenomic analysis of subglacial sediment from East Antarctica.

Authors:  Zhifeng Yang; Yu Zhang; Yongxin Lv; Wenkai Yan; Xiang Xiao; Bo Sun; Hongmei Ma
Journal:  J Microbiol       Date:  2019-11-22       Impact factor: 3.422

8.  Aerobic and Anaerobic Thiosulfate Oxidation by a Cold-Adapted, Subglacial Chemoautotroph.

Authors:  Zoë R Harrold; Mark L Skidmore; Trinity L Hamilton; Libby Desch; Kirina Amada; Will van Gelder; Kevin Glover; Eric E Roden; Eric S Boyd
Journal:  Appl Environ Microbiol       Date:  2015-12-28       Impact factor: 4.792

9.  Elevated N2O emission by the rice roots: based on the abundances of narG and bacterial amoA genes.

Authors:  Zhenxing Zhang; Wenzhao Zhang; Huicui Yang; Rong Sheng; Wenxue Wei; Hongling Qin
Journal:  Environ Sci Pollut Res Int       Date:  2016-11-03       Impact factor: 4.223

10.  Competition for ammonia influences the structure of chemotrophic communities in geothermal springs.

Authors:  Trinity L Hamilton; Evangeline Koonce; Alta Howells; Jeff R Havig; Talia Jewell; José R de la Torre; John W Peters; Eric S Boyd
Journal:  Appl Environ Microbiol       Date:  2013-11-15       Impact factor: 4.792

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