Literature DB >> 21622753

Complete genome sequence of Pusillimonas sp. T7-7, a cold-tolerant diesel oil-degrading bacterium isolated from the Bohai Sea in China.

Boyang Cao1, Ting Ma, Yan Ren, Yi Ren, Guoqiang Li, Ping Li, Xi Guo, Peng Ding, Lu Feng.   

Abstract

Pusillimonas sp. T7-7 is a diesel oil-degrading cold-tolerant bacterium isolated from the benthal mud of a petroleum-contaminated site in Bohai Sea, China. We present here the complete genome sequence of T7-7. Genome analysis revealed many features of typical marine bacteria, including the absence of intact sugar metabolic pathways, the presence of glyoxylate and gluconeogenesis pathways, and the abilities for nitrate assimilation and denitrification, as well as sulfate reduction and sulfite oxidation. The presence of novel genes for the degradation of diesel oils was suggested.

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Year:  2011        PMID: 21622753      PMCID: PMC3147516          DOI: 10.1128/JB.05242-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  8 in total

1.  Improved microbial gene identification with GLIMMER.

Authors:  A L Delcher; D Harmon; S Kasif; O White; S L Salzberg
Journal:  Nucleic Acids Res       Date:  1999-12-01       Impact factor: 16.971

Review 2.  Expanding the alkane oxygenase toolbox: new enzymes and applications.

Authors:  Jan B van Beilen; Enrico G Funhoff
Journal:  Curr Opin Biotechnol       Date:  2005-06       Impact factor: 9.740

3.  Genome and proteome of long-chain alkane degrading Geobacillus thermodenitrificans NG80-2 isolated from a deep-subsurface oil reservoir.

Authors:  Lu Feng; Wei Wang; Jiansong Cheng; Yi Ren; Guang Zhao; Chunxu Gao; Yun Tang; Xueqian Liu; Weiqing Han; Xia Peng; Rulin Liu; Lei Wang
Journal:  Proc Natl Acad Sci U S A       Date:  2007-03-19       Impact factor: 11.205

4.  Microbial gene identification using interpolated Markov models.

Authors:  S L Salzberg; A L Delcher; S Kasif; O White
Journal:  Nucleic Acids Res       Date:  1998-01-15       Impact factor: 16.971

5.  Whole-genome random sequencing and assembly of Haemophilus influenzae Rd.

Authors:  R D Fleischmann; M D Adams; O White; R A Clayton; E F Kirkness; A R Kerlavage; C J Bult; J F Tomb; B A Dougherty; J M Merrick
Journal:  Science       Date:  1995-07-28       Impact factor: 47.728

6.  Complete nucleotide sequence of plasmid plca36 isolated from Lactobacillus casei Zhang.

Authors:  Wenyi Zhang; Dongliang Yu; Zhihong Sun; Xia Chen; Qiuhua Bao; He Meng; Songnian Hu; Heping Zhang
Journal:  Plasmid       Date:  2008-07-30       Impact factor: 3.466

7.  Genomic island excisions in Bordetella petrii.

Authors:  Melanie Lechner; Karin Schmitt; Susanne Bauer; David Hot; Christine Hubans; Erwan Levillain; Camille Locht; Yves Lemoine; Roy Gross
Journal:  BMC Microbiol       Date:  2009-07-18       Impact factor: 3.605

8.  The missing link: Bordetella petrii is endowed with both the metabolic versatility of environmental bacteria and virulence traits of pathogenic Bordetellae.

Authors:  Roy Gross; Carlos A Guzman; Mohammed Sebaihia; Vítor A P Martins dos Santos; Dietmar H Pieper; Ralf Koebnik; Melanie Lechner; Daniela Bartels; Jens Buhrmester; Jomuna V Choudhuri; Thomas Ebensen; Lars Gaigalat; Stefanie Herrmann; Amit N Khachane; Christof Larisch; Stefanie Link; Burkhard Linke; Folker Meyer; Sascha Mormann; Diana Nakunst; Christian Rückert; Susanne Schneiker-Bekel; Kai Schulze; Frank-Jörg Vorhölter; Tetyana Yevsa; Jacquelyn T Engle; William E Goldman; Alfred Pühler; Ulf B Göbel; Alexander Goesmann; Helmut Blöcker; Olaf Kaiser; Rosa Martinez-Arias
Journal:  BMC Genomics       Date:  2008-09-30       Impact factor: 3.969

  8 in total
  9 in total

1.  Characterization of a novel Rieske-type alkane monooxygenase system in Pusillimonas sp. strain T7-7.

Authors:  Ping Li; Lei Wang; Lu Feng
Journal:  J Bacteriol       Date:  2013-02-15       Impact factor: 3.490

2.  Novel Gene Encoding 5-Aminosalicylate 1,2-Dioxygenase from Comamonas sp. Strain QT12 and Catalytic Properties of the Purified Enzyme.

Authors:  Hao Yu; Shuxue Zhao; Lizhong Guo
Journal:  J Bacteriol       Date:  2017-12-05       Impact factor: 3.490

3.  Bioremediation of clay with high oil content and biological response after restoration.

Authors:  Xiaokang Li; Jinling Li; Chengtun Qu; Tao Yu; Mingming Du
Journal:  Sci Rep       Date:  2021-05-06       Impact factor: 4.379

4.  Genome evolution and phylogenomic analysis of Candidatus Kinetoplastibacterium, the betaproteobacterial endosymbionts of Strigomonas and Angomonas.

Authors:  João M P Alves; Myrna G Serrano; Flávia Maia da Silva; Logan J Voegtly; Andrey V Matveyev; Marta M G Teixeira; Erney P Camargo; Gregory A Buck
Journal:  Genome Biol Evol       Date:  2013       Impact factor: 3.416

5.  Alkane hydroxylase genes in psychrophile genomes and the potential for cold active catalysis.

Authors:  Jeff S Bowman; Jody W Deming
Journal:  BMC Genomics       Date:  2014-12-16       Impact factor: 3.969

6.  Illumina MiSeq Sequencing Reveals Diverse Microbial Communities of Activated Sludge Systems Stimulated by Different Aromatics for Indigo Biosynthesis from Indole.

Authors:  Xuwang Zhang; Yuanyuan Qu; Qiao Ma; Zhaojing Zhang; Duanxing Li; Jingwei Wang; Wenli Shen; E Shen; Jiti Zhou
Journal:  PLoS One       Date:  2015-04-30       Impact factor: 3.240

7.  Draft Genome Sequences of Pseudomonas fluorescens BS2 and Pusillimonas noertemannii BS8, Soil Bacteria That Cooperate To Degrade the Poly-γ-d-Glutamic Acid Anthrax Capsule.

Authors:  Richard A Stabler; David Negus; Arnab Pain; Peter W Taylor
Journal:  Genome Announc       Date:  2013-01-24

8.  The different potential of sponge bacterial symbionts in N₂ release indicated by the phylogenetic diversity and abundance analyses of denitrification genes, nirK and nosZ.

Authors:  Xia Zhang; Liming He; Fengli Zhang; Wei Sun; Zhiyong Li
Journal:  PLoS One       Date:  2013-06-10       Impact factor: 3.240

9.  The Emergence of Different Functionally Equivalent PAH Degrading Microbial Communities from a Single Soil in Liquid PAH Enrichment Cultures and Soil Microcosms Receiving PAHs with and without Bioaugmentation.

Authors:  Francine Amaral Piubeli; Ligia Gibbi Dos Santos; Emilia Naranjo Fernández; Flávio Henrique DA Silva; Lucia Regina Durrant; Matthew James Grossman
Journal:  Pol J Microbiol       Date:  2018
  9 in total

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