Literature DB >> 21622738

Genome sequence of the vertebrate gut symbiont Lactobacillus reuteri ATCC 53608.

Darren Heavens1, Louise E Tailford, Lisa Crossman, Faye Jeffers, Donald A Mackenzie, Mario Caccamo, Nathalie Juge.   

Abstract

Lactobacillus reuteri, inhabiting the gastrointestinal tracts of a range of vertebrates, is a true symbiont with effects established as beneficial to the host. Here we describe the draft genome of L. reuteri ATCC 53608, isolated from a pig. The genome sequence provides important insights into the evolutionary changes underlying host specialization.

Entities:  

Mesh：

Year:  2011        PMID： 21622738      PMCID： PMC3147506          DOI： 10.1128/JB.05282-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  10 in total

1.  Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes.

Authors:  A Krogh; B Larsson; G von Heijne; E L Sonnhammer
Journal:  J Mol Biol       Date:  2001-01-19       Impact factor: 5.469

2.  Artemis: sequence visualization and annotation.

Authors:  K Rutherford; J Parkhill; J Crook; T Horsnell; P Rice; M A Rajandream; B Barrell
Journal:  Bioinformatics       Date:  2000-10       Impact factor: 6.937

3.  GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions.

Authors:  J Besemer; A Lomsadze; M Borodovsky
Journal:  Nucleic Acids Res       Date:  2001-06-15       Impact factor: 16.971

Review 4.  Host-microbial symbiosis in the vertebrate gastrointestinal tract and the Lactobacillus reuteri paradigm.

Authors:  Jens Walter; Robert A Britton; Stefan Roos
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-25       Impact factor: 11.205

5.  Identifying bacterial genes and endosymbiont DNA with Glimmer.

Authors:  Arthur L Delcher; Kirsten A Bratke; Edwin C Powers; Steven L Salzberg
Journal:  Bioinformatics       Date:  2007-01-19       Impact factor: 6.937

6.  Locating proteins in the cell using TargetP, SignalP and related tools.

Authors:  Olof Emanuelsson; Søren Brunak; Gunnar von Heijne; Henrik Nielsen
Journal:  Nat Protoc       Date:  2007       Impact factor: 13.491

7.  Strain-specific diversity of mucus-binding proteins in the adhesion and aggregation properties of Lactobacillus reuteri.

Authors:  Donald A MacKenzie; Faye Jeffers; Mary L Parker; Amandine Vibert-Vallet; Roy J Bongaerts; Stefan Roos; Jens Walter; Nathalie Juge
Journal:  Microbiology (Reading)       Date:  2010-09-16       Impact factor: 2.777

8.  Diversification of the gut symbiont Lactobacillus reuteri as a result of host-driven evolution.

Authors:  Phaik Lyn Oh; Andrew K Benson; Daniel A Peterson; Prabhu B Patil; Etsuko N Moriyama; Stefan Roos; Jens Walter
Journal:  ISME J       Date:  2009-11-19       Impact factor: 10.302

9.  The evolution of host specialization in the vertebrate gut symbiont Lactobacillus reuteri.

Authors:  Steven A Frese; Andrew K Benson; Gerald W Tannock; Diane M Loach; Jaehyoung Kim; Min Zhang; Phaik Lyn Oh; Nicholas C K Heng; Prabhu B Patil; Nathalie Juge; Donald A Mackenzie; Bruce M Pearson; Alla Lapidus; Eileen Dalin; Hope Tice; Eugene Goltsman; Miriam Land; Loren Hauser; Natalia Ivanova; Nikos C Kyrpides; Jens Walter
Journal:  PLoS Genet       Date:  2011-02-17       Impact factor: 5.917

10.  InterPro: the integrative protein signature database.

Authors:  Sarah Hunter; Rolf Apweiler; Teresa K Attwood; Amos Bairoch; Alex Bateman; David Binns; Peer Bork; Ujjwal Das; Louise Daugherty; Lauranne Duquenne; Robert D Finn; Julian Gough; Daniel Haft; Nicolas Hulo; Daniel Kahn; Elizabeth Kelly; Aurélie Laugraud; Ivica Letunic; David Lonsdale; Rodrigo Lopez; Martin Madera; John Maslen; Craig McAnulla; Jennifer McDowall; Jaina Mistry; Alex Mitchell; Nicola Mulder; Darren Natale; Christine Orengo; Antony F Quinn; Jeremy D Selengut; Christian J A Sigrist; Manjula Thimma; Paul D Thomas; Franck Valentin; Derek Wilson; Cathy H Wu; Corin Yeats
Journal:  Nucleic Acids Res       Date:  2008-10-21       Impact factor: 16.971
  10 in total
  9 in total

1.  Study and Understanding Behavior of Alginate-Inulin Synbiotics Beads for Protection and Delivery of Antimicrobial-Producing Probiotics in Colonic Simulated Conditions.

Authors:  Abdelbasset Atia; Ahmed Gomaa; Benoit Fernandez; Muriel Subirade; Ismail Fliss
Journal:  Probiotics Antimicrob Proteins       Date:  2018-06       Impact factor: 4.609

2.  The lung tissue microbiome in chronic obstructive pulmonary disease.

Authors:  Marc A Sze; Pedro A Dimitriu; Shizu Hayashi; W Mark Elliott; John E McDonough; John V Gosselink; Joel Cooper; Don D Sin; William W Mohn; James C Hogg
Journal:  Am J Respir Crit Care Med       Date:  2012-03-15       Impact factor: 21.405

3.  Exopolysaccharides synthesized by Lactobacillus reuteri protect against enterotoxigenic Escherichia coli in piglets.

Authors:  Xiao Yan Chen; Adrienne Woodward; Ruurd T Zijlstra; Michael G Gänzle
Journal:  Appl Environ Microbiol       Date:  2014-07-11       Impact factor: 4.792

4.  Study and use of the probiotic Lactobacillus reuteri in pigs: a review.

Authors:  Chengli Hou; Xiangfang Zeng; Fengjuan Yang; Hong Liu; Shiyan Qiao
Journal:  J Anim Sci Biotechnol       Date:  2015-04-09

5.  Molecular characterization of host-specific biofilm formation in a vertebrate gut symbiont.

Authors:  Steven A Frese; Donald A Mackenzie; Daniel A Peterson; Robert Schmaltz; Teresa Fangman; You Zhou; Chaomei Zhang; Andrew K Benson; Liz A Cody; Francis Mulholland; Nathalie Juge; Jens Walter
Journal:  PLoS Genet       Date:  2013-12-26       Impact factor: 5.917

Review 6.  The use of lactic Acid bacteria as a probiotic in Swine diets.

Authors:  Fengjuan Yang; Chengli Hou; Xiangfang Zeng; Shiyan Qiao
Journal:  Pathogens       Date:  2015-01-27

7.  The pan-genome of Lactobacillus reuteri strains originating from the pig gastrointestinal tract.

Authors:  Udo Wegmann; Donald A MacKenzie; Jinshui Zheng; Alexander Goesmann; Stefan Roos; David Swarbreck; Jens Walter; Lisa C Crossman; Nathalie Juge
Journal:  BMC Genomics       Date:  2015-12-01       Impact factor: 3.969

8.  Unusual genome complexity in Lactobacillus salivarius JCM1046.

Authors:  Emma J Raftis; Brian M Forde; Marcus J Claesson; Paul W O'Toole
Journal:  BMC Genomics       Date:  2014-09-08       Impact factor: 3.969

9.  A small predatory core genome in the divergent marine Bacteriovorax marinus SJ and the terrestrial Bdellovibrio bacteriovorus.

Authors:  Lisa C Crossman; Huan Chen; Ana-M Cerdeño-Tárraga; Karen Brooks; Michael A Quail; Silvia A Pineiro; Laura Hobley; R Elizabeth Sockett; Stephen D Bentley; Julian Parkhill; Henry N Williams; O Colin Stine
Journal:  ISME J       Date:  2012-09-06       Impact factor: 10.302
  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.