Literature DB >> 21607545

Multigene barcoding and phylogeny of geographically widespread muricids (Gastropoda: Neogastropoda) along the coast of China.

Shanmei Zou1, Qi Li, Lingfeng Kong.   

Abstract

The identification and phylogeny of muricids have been in a state of confusion for a long time due to the morphological convergence and plasticity. DNA-based identification and phylogeny methods often offer an analytically powerful addition or even an alternative. In this study, we employ a DNA barcoding method to identify 17 known and easily confused muricid species (120 individuals) from the whole China coast based on mitochondrial cytochrome c oxidase subunit I (COI) and 16S rRNA sequences, and nuclear ITS-1 and 28S rRNA sequences. The phylogeny of muricid subfamilies is also analysed based on all mitochondrial and nuclear sequences. The universal COI and 16S rRNA primers did not work broadly across the study group, necessitating the redesign of muricid specific COI and 16S rRNA primers in this paper. Our study demonstrates that COI gene is a suitable marker for barcoding muricids, which can distinguish all muricid species studied. Phylogenetic analysis of 16S rRNA, ITS-1 and 28S rRNA data also provide good support for the species resolution observed in COI data. The relationships of muricid subfamilies are resolved based on the separate and combined gene data that showed the monophyly of each the subfamilies Ergalataxinae, Rapaninae, Ocenebrinae and Muricinae, especially that Ergalataxinae did not fall within Rapaninae.

Entities:  

Mesh:

Substances:

Year:  2011        PMID: 21607545     DOI: 10.1007/s10126-011-9384-5

Source DB:  PubMed          Journal:  Mar Biotechnol (NY)        ISSN: 1436-2228            Impact factor:   3.619


  20 in total

1.  Phylogenetic relationships within the polyopisthocotylean monogeneans (Platyhelminthes) inferred from partial 28S rDNA sequences.

Authors:  R Jovelin; J L Justine
Journal:  Int J Parasitol       Date:  2001-04       Impact factor: 3.981

2.  Biological identifications through DNA barcodes.

Authors:  Paul D N Hebert; Alina Cywinska; Shelley L Ball; Jeremy R deWaard
Journal:  Proc Biol Sci       Date:  2003-02-07       Impact factor: 5.349

3.  DNA points the way ahead in taxonomy.

Authors:  Diethard Tautz; Peter Arctander; Alessandro Minelli; Richard H Thomas; Alfried P Vogler
Journal:  Nature       Date:  2002-08-01       Impact factor: 49.962

4.  Testing the utility of partial COI sequences for phylogenetic estimates of gastropod relationships.

Authors:  Elpidio A Remigio; Paul D N Hebert
Journal:  Mol Phylogenet Evol       Date:  2003-12       Impact factor: 4.286

5.  DNA barcoding will often fail to discover new animal species over broad parameter space.

Authors:  Michael J Hickerson; Christopher P Meyer; Craig Moritz
Journal:  Syst Biol       Date:  2006-10       Impact factor: 15.683

6.  High mitochondrial diversity in geographically widespread butterflies of Madagascar: a test of the DNA barcoding approach.

Authors:  Marjorie C Linares; Iván D Soto-Calderón; David C Lees; Nicola M Anthony
Journal:  Mol Phylogenet Evol       Date:  2008-11-21       Impact factor: 4.286

7.  A molecular phylogenetic framework for the Muricidae, a diverse family of carnivorous gastropods.

Authors:  A Barco; M Claremont; D G Reid; R Houart; P Bouchet; S T Williams; C Cruaud; A Couloux; M Oliverio
Journal:  Mol Phylogenet Evol       Date:  2010-03-11       Impact factor: 4.286

8.  The origin and evolution of the Neogastropoda.

Authors:  W F Ponder
Journal:  Malacologia       Date:  1973       Impact factor: 0.625

9.  Extraction of high molecular weight DNA from molluscs.

Authors:  B Winnepenninckx; T Backeljau; R De Wachter
Journal:  Trends Genet       Date:  1993-12       Impact factor: 11.639

10.  DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates.

Authors:  O Folmer; M Black; W Hoeh; R Lutz; R Vrijenhoek
Journal:  Mol Mar Biol Biotechnol       Date:  1994-10
View more
  5 in total

1.  Pay Attention to the Overlooked Cryptic Diversity in Existing Barcoding Data: the Case of Mollusca with Character-Based DNA Barcoding.

Authors:  Shanmei Zou; Qi Li
Journal:  Mar Biotechnol (NY)       Date:  2016-02-22       Impact factor: 3.619

2.  Comparing the usefulness of distance, monophyly and character-based DNA barcoding methods in species identification: a case study of neogastropoda.

Authors:  Shanmei Zou; Qi Li; Lingfeng Kong; Hong Yu; Xiaodong Zheng
Journal:  PLoS One       Date:  2011-10-24       Impact factor: 3.240

3.  Enhanced primers for amplification of DNA barcodes from a broad range of marine metazoans.

Authors:  Jorge Lobo; Pedro M Costa; Marcos A L Teixeira; Maria S G Ferreira; Maria H Costa; Filipe O Costa
Journal:  BMC Ecol       Date:  2013-09-10       Impact factor: 2.964

4.  Monophyly, distance and character-based multigene barcoding reveal extraordinary cryptic diversity in Nassarius: a complex and dangerous community.

Authors:  Shanmei Zou; Qi Li; Lingfeng Kong
Journal:  PLoS One       Date:  2012-10-11       Impact factor: 3.240

5.  Patterns of DNA barcode variation in Canadian marine molluscs.

Authors:  Kara K S Layton; André L Martel; Paul D N Hebert
Journal:  PLoS One       Date:  2014-04-17       Impact factor: 3.240

  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.