Literature DB >> 21602396

Combined application of PCR-based functional assays for the detection of aromatic-compound-degrading anaerobes.

Kevin Kuntze1, Carsten Vogt, Hans-Hermann Richnow, Matthias Boll.   

Abstract

To explore the reliability of assays that detect aromatic-compound-degrading anaerobes, a combination of three functional-gene-targeting assays was applied to microcosms from benzene-contaminated aquifers. Results of the assays were consistent and suggest that species related to the genera Azoarcus and Geobacter dominated benzene degradation at the individual sites.

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Year:  2011        PMID： 21602396      PMCID： PMC3147403          DOI： 10.1128/AEM.00335-11

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  25 in total

1.  Detection of anaerobic toluene and hydrocarbon degraders in contaminated aquifers using benzylsuccinate synthase (bssA) genes as a functional marker.

Authors:  Christian Winderl; Sabine Schaefer; Tillmann Lueders
Journal:  Environ Microbiol       Date:  2007-04       Impact factor: 5.491

2.  Anaerobic degradation of benzene by a marine sulfate-reducing enrichment culture, and cell hybridization of the dominant phylotype.

Authors:  Florin Musat; Friedrich Widdel
Journal:  Environ Microbiol       Date:  2008-01       Impact factor: 5.491

Review 3.  Anaerobic catabolism of aromatic compounds: a genetic and genomic view.

Authors:  Manuel Carmona; María Teresa Zamarro; Blas Blázquez; Gonzalo Durante-Rodríguez; Javier F Juárez; J Andrés Valderrama; María J L Barragán; José Luis García; Eduardo Díaz
Journal:  Microbiol Mol Biol Rev       Date:  2009-03       Impact factor: 11.056

4.  Microbial communities associated with anaerobic benzene degradation in a petroleum-contaminated aquifer.

Authors:  J N Rooney-Varga; R T Anderson; J L Fraga; D Ringelberg; D R Lovley
Journal:  Appl Environ Microbiol       Date:  1999-07       Impact factor: 4.792

5.  Cyclohexa-1,5-diene-1-carbonyl-coenzyme A (CoA) hydratases of Geobacter metallireducens and Syntrophus aciditrophicus: Evidence for a common benzoyl-CoA degradation pathway in facultative and strict anaerobes.

Authors:  Franziska Peters; Yoshifumi Shinoda; Michael J McInerney; Matthias Boll
Journal:  J Bacteriol       Date:  2006-11-22       Impact factor: 3.490

6.  The bzd gene cluster, coding for anaerobic benzoate catabolism, in Azoarcus sp. strain CIB.

Authors:  María J López Barragán; Manuel Carmona; María T Zamarro; Bärbel Thiele; Matthias Boll; Georg Fuchs; José L García; Eduardo Díaz
Journal:  J Bacteriol       Date:  2004-09       Impact factor: 3.490

7.  Identification and characterization of the tungsten-containing class of benzoyl-coenzyme A reductases.

Authors:  Johannes W Kung; Claudia Löffler; Katerina Dörner; Dimitri Heintz; Sébastien Gallien; Alain Van Dorsselaer; Thorsten Friedrich; Matthias Boll
Journal:  Proc Natl Acad Sci U S A       Date:  2009-10-06       Impact factor: 11.205

8.  Genes coding for the benzoyl-CoA pathway of anaerobic aromatic metabolism in the bacterium Thauera aromatica.

Authors:  K Breese; M Boll; J Alt-Mörbe; H Schägger; G Fuchs
Journal:  Eur J Biochem       Date:  1998-08-15

9.  6-Oxocyclohex-1-ene-1-carbonyl-coenzyme A hydrolases from obligately anaerobic bacteria: characterization and identification of its gene as a functional marker for aromatic compounds degrading anaerobes.

Authors:  Kevin Kuntze; Yoshifumi Shinoda; Housna Moutakki; Michael J McInerney; Carsten Vogt; Hans-Hermann Richnow; Matthias Boll
Journal:  Environ Microbiol       Date:  2008-02-28       Impact factor: 5.491

Review 10.  Adding handles to unhandy substrates: anaerobic hydrocarbon activation mechanisms.

Authors:  Johann Heider
Journal:  Curr Opin Chem Biol       Date:  2007-03-08       Impact factor: 8.822
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  11 in total

Review 1.  Anaerobic biodegradation of phenol in wastewater treatment: achievements and limits.

Authors:  M Concetta Tomei; Domenica Mosca Angelucci; Elisa Clagnan; Lorenzo Brusetti
Journal:  Appl Microbiol Biotechnol       Date:  2021-02-25       Impact factor: 4.813

2.  Insights into biodegradation through depth-resolved microbial community functional and structural profiling of a crude-oil contaminant plume.

Authors:  Nicole Fahrenfeld; Isabelle M Cozzarelli; Zach Bailey; Amy Pruden
Journal:  Microb Ecol       Date:  2014-04-24       Impact factor: 4.552

3.  Integrated multi-omics analyses reveal the biochemical mechanisms and phylogenetic relevance of anaerobic androgen biodegradation in the environment.

Authors:  Fu-Chun Yang; Yi-Lung Chen; Sen-Lin Tang; Chang-Ping Yu; Po-Hsiang Wang; Wael Ismail; Chia-Hsiang Wang; Jiun-Yan Ding; Cheng-Yu Yang; Chia-Ying Yang; Yin-Ru Chiang
Journal:  ISME J       Date:  2016-02-12       Impact factor: 10.302

4.  Anaerobic benzene oxidation via phenol in Geobacter metallireducens.

Authors:  Tian Zhang; Pier-Luc Tremblay; Akhilesh Kumar Chaurasia; Jessica A Smith; Timothy S Bain; Derek R Lovley
Journal:  Appl Environ Microbiol       Date:  2013-10-04       Impact factor: 4.792

5.  Enhanced gene detection assays for fumarate-adding enzymes allow uncovering of anaerobic hydrocarbon degraders in terrestrial and marine systems.

Authors:  Frederick von Netzer; Giovanni Pilloni; Sara Kleindienst; Martin Krüger; Katrin Knittel; Friederike Gründger; Tillmann Lueders
Journal:  Appl Environ Microbiol       Date:  2012-11-02       Impact factor: 4.792

6.  Spatial Abundance and Distribution of Potential Microbes and Functional Genes Associated with Anaerobic Mineralization of Pentachlorophenol in a Cylindrical Reactor.

Authors:  Zhi-Ling Li; Jun Nan; Cong Huang; Bin Liang; Wen-Zong Liu; Hao-Yi Cheng; Chunfang Zhang; Dongdong Zhang; Deyong Kong; Kyoko Kanamaru; Tetsuo Kobayashi; Ai-Jie Wang; Arata Katayama
Journal:  Sci Rep       Date:  2016-01-11       Impact factor: 4.379

7.  The ecology of anaerobic degraders of BTEX hydrocarbons in aquifers.

Authors:  Tillmann Lueders
Journal:  FEMS Microbiol Ecol       Date:  2016-11-02       Impact factor: 4.194

8.  Nutrient and acetate amendment leads to acetoclastic methane production and microbial community change in a non-producing Australian coal well.

Authors:  Michiel H In 't Zandt; Sabrina Beckmann; Ruud Rijkers; Mike S M Jetten; Mike Manefield; Cornelia U Welte
Journal:  Microb Biotechnol       Date:  2017-09-19       Impact factor: 5.813

Review 9.  The bamA gene for anaerobic ring fission is widely distributed in the environment.

Authors:  Abigail W Porter; Lily Y Young
Journal:  Front Microbiol       Date:  2013-10-10       Impact factor: 5.640

10.  Benzylsuccinate Synthase is Post-Transcriptionally Regulated in the Toluene-Degrading Denitrifier Magnetospirillum sp. Strain 15-1.

Authors:  Ingrid Meyer-Cifuentes; Sylvie Gruhl; Sven-Bastiaan Haange; Vanessa Lünsmann; Nico Jehmlich; Martin von Bergen; Hermann J Heipieper; Jochen A Müller
Journal:  Microorganisms       Date:  2020-05-07
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