Literature DB >> 21602357

Complete genome sequence of hyperthermophilic Pyrococcus sp. strain NA2, isolated from a deep-sea hydrothermal vent area.

Hyun Sook Lee1, Seung Seob Bae, Min-Sik Kim, Kae Kyoung Kwon, Sung Gyun Kang, Jung-Hyun Lee.   

Abstract

Pyrococcus sp. strain NA2, isolated from a deep-sea hydrothermal vent sample, is a novel marine hyperthermophilic archaeon that grows optimally at 93 °C. The complete genome sequence of the strain contains all the genes for the tricarboxylic acid cycle except for succinate dehydrogenase/fumarate reductase, but the genome does not encode proteins involved in polysaccharide utilization.

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Year:  2011        PMID： 21602357      PMCID： PMC3133302          DOI： 10.1128/JB.05150-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  8 in total

1.  Genomic sequence of hyperthermophile, Pyrococcus furiosus: implications for physiology and enzymology.

Authors:  F T Robb; D L Maeder; J R Brown; J DiRuggiero; M D Stump; R K Yeh; R B Weiss; D M Dunn
Journal:  Methods Enzymol       Date:  2001       Impact factor: 1.600

2.  Complete sequence and gene organization of the genome of a hyper-thermophilic archaebacterium, Pyrococcus horikoshii OT3.

Authors:  Y Kawarabayasi; M Sawada; H Horikawa; Y Haikawa; Y Hino; S Yamamoto; M Sekine; S Baba; H Kosugi; A Hosoyama; Y Nagai; M Sakai; K Ogura; R Otsuka; H Nakazawa; M Takamiya; Y Ohfuku; T Funahashi; T Tanaka; Y Kudoh; J Yamazaki; N Kushida; A Oguchi; K Aoki; H Kikuchi
Journal:  DNA Res       Date:  1998-04-30       Impact factor: 4.458

3.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

4.  An integrated analysis of the genome of the hyperthermophilic archaeon Pyrococcus abyssi.

Authors:  Georges N Cohen; Valérie Barbe; Didier Flament; Michael Galperin; Roland Heilig; Odile Lecompte; Olivier Poch; Daniel Prieur; Joël Quérellou; Raymond Ripp; Jean-Claude Thierry; John Van der Oost; Jean Weissenbach; Yvan Zivanovic; Patrick Forterre
Journal:  Mol Microbiol       Date:  2003-03       Impact factor: 3.501

5.  Formate-driven growth coupled with H(2) production.

Authors:  Yun Jae Kim; Hyun Sook Lee; Eun Sook Kim; Seung Seob Bae; Jae Kyu Lim; Rie Matsumi; Alexander V Lebedinsky; Tatyana G Sokolova; Darya A Kozhevnikova; Sun-Shin Cha; Sang-Jin Kim; Kae Kyoung Kwon; Tadayuki Imanaka; Haruyuki Atomi; Elizaveta A Bonch-Osmolovskaya; Jung-Hyun Lee; Sung Gyun Kang
Journal:  Nature       Date:  2010-09-16       Impact factor: 49.962

6.  The complete genome sequence of Thermococcus onnurineus NA1 reveals a mixed heterotrophic and carboxydotrophic metabolism.

Authors:  Hyun Sook Lee; Sung Gyun Kang; Seung Seob Bae; Jae Kyu Lim; Yona Cho; Yun Jae Kim; Jeong Ho Jeon; Sun-Shin Cha; Kae Kyoung Kwon; Hyung-Tae Kim; Cheol-Joo Park; Hee-Wook Lee; Seung Il Kim; Jongsik Chun; Rita R Colwell; Sang-Jin Kim; Jung-Hyun Lee
Journal:  J Bacteriol       Date:  2008-09-12       Impact factor: 3.490

7.  Molecular evolution of the hyperthermophilic archaea of the Pyrococcus genus: analysis of adaptation to different environmental conditions.

Authors:  Konstantin V Gunbin; Dmitry A Afonnikov; Nikolay A Kolchanov
Journal:  BMC Genomics       Date:  2009-12-30       Impact factor: 3.969

8.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors:  Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971
  8 in total
  8 in total

Review 1.  Diversity of CRISPR systems in the euryarchaeal Pyrococcales.

Authors:  Cédric Norais; Annick Moisan; Christine Gaspin; Béatrice Clouet-d'Orval
Journal:  RNA Biol       Date:  2013-02-19       Impact factor: 4.652

2.  Analysis of the complete genome sequence of the archaeon Pyrococcus chitonophagus DSM 10152 (formerly Thermococcus chitonophagus).

Authors:  Konstantinos Papadimitriou; Panagiotis K Baharidis; Anastasios Georgoulis; Marion Engel; Maria Louka; Georgia Karamolegkou; Aggeliki Tsoka; Jochen Blom; Bruno Pot; Piotr Malecki; Wojciech Rypniewski; Harald Huber; Michael Schloter; Constantinos Vorgias
Journal:  Extremophiles       Date:  2016-03-25       Impact factor: 2.395

3.  Dimethyl sulfoxide reduction by a hyperhermophilic archaeon Thermococcus onnurineus NA1 via a cysteine-cystine redox shuttle.

Authors:  Ae Ran Choi; Min-Sik Kim; Sung Gyun Kang; Hyun Sook Lee
Journal:  J Microbiol       Date:  2016-01-05       Impact factor: 3.422

4.  TPV1, the first virus isolated from the hyperthermophilic genus Thermococcus.

Authors:  Aurore Gorlas; Eugene V Koonin; Nadège Bienvenu; Daniel Prieur; Claire Geslin
Journal:  Environ Microbiol       Date:  2011-12-12       Impact factor: 5.491

5.  Genome sequencing of a genetically tractable Pyrococcus furiosus strain reveals a highly dynamic genome.

Authors:  Stephanie L Bridger; W Andrew Lancaster; Farris L Poole; Gerrit J Schut; Michael W W Adams
Journal:  J Bacteriol       Date:  2012-05-25       Impact factor: 3.490

6.  Comparative genomics reveals conserved positioning of essential genomic clusters in highly rearranged Thermococcales chromosomes.

Authors:  Matteo Cossu; Violette Da Cunha; Claire Toffano-Nioche; Patrick Forterre; Jacques Oberto
Journal:  Biochimie       Date:  2015-07-10       Impact factor: 4.079

7.  Structural basis of substrate selectivity of E. coli prolidase.

Authors:  Jeremy Weaver; Tylan Watts; Pingwei Li; Hays S Rye
Journal:  PLoS One       Date:  2014-10-29       Impact factor: 3.240

8.  Complete Genome Sequence of Pseudomonas denitrificans ATCC 13867.

Authors:  Satish Kumar Ainala; Ashok Somasundar; Sunghoon Park
Journal:  Genome Announc       Date:  2013-05-30
  8 in total

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