Literature DB >> 21601682

Gene synthesis: methods and applications.

Randall A Hughes1, Aleksandr E Miklos, Andrew D Ellington.   

Abstract

DNA synthesis techniques and technologies are quickly becoming a cornerstone of modern molecular biology and play a pivotal role in the field of synthetic biology. The ability to synthesize whole genes, novel genetic pathways, and even entire genomes is no longer the dream it was 30 years ago. Using little more than a thermocycler, commercially synthesized oligonucleotides, and DNA polymerases, a standard molecular biology laboratory can synthesize several kilobase pairs of synthetic DNA in a week using existing techniques. Herein, we review the techniques used in the generation of synthetic DNA, from the chemical synthesis of oligonucleotides to their assembly into long, custom sequences. Software and websites to facilitate the execution of these approaches are explored, and applications of DNA synthesis techniques to gene expression and synthetic biology are discussed. Finally, an example of automated gene synthesis from our own laboratory is provided.
Copyright © 2011 Elsevier Inc. All rights reserved.

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Year:  2011        PMID: 21601682     DOI: 10.1016/B978-0-12-385120-8.00012-7

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN: 0076-6879            Impact factor:   1.600


  20 in total

1.  A protocol for construction of gene targeting vectors and generation of homologous recombinant embryonic stem cells.

Authors:  Hicham Bouabe; Klaus Okkenhaug
Journal:  Methods Mol Biol       Date:  2013

2.  Directed evolution of genetic parts and circuits by compartmentalized partnered replication.

Authors:  Jared W Ellefson; Adam J Meyer; Randall A Hughes; Joe R Cannon; Jennifer S Brodbelt; Andrew D Ellington
Journal:  Nat Biotechnol       Date:  2013-11-03       Impact factor: 54.908

3.  Scalable high throughput selection from phage-displayed synthetic antibody libraries.

Authors:  Shane Miersch; Zhijian Li; Rachel Hanna; Megan E McLaughlin; Michael Hornsby; Tet Matsuguchi; Marcin Paduch; Annika Sääf; Jim Wells; Shohei Koide; Anthony Kossiakoff; Sachdev S Sidhu
Journal:  J Vis Exp       Date:  2015-01-17       Impact factor: 1.355

Review 4.  Design of Experiments As a Tool for Optimization in Recombinant Protein Biotechnology: From Constructs to Crystals.

Authors:  Christos Papaneophytou
Journal:  Mol Biotechnol       Date:  2019-12       Impact factor: 2.695

5.  Genetically Encoded Toolbox for Glycocalyx Engineering: Tunable Control of Cell Adhesion, Survival, and Cancer Cell Behaviors.

Authors:  Carolyn R Shurer; Marshall J Colville; Vivek K Gupta; Shelby E Head; FuiBoon Kai; Jonathon N Lakins; Matthew J Paszek
Journal:  ACS Biomater Sci Eng       Date:  2017-02-28

Review 6.  DNA synthesis, assembly and applications in synthetic biology.

Authors:  Siying Ma; Nicholas Tang; Jingdong Tian
Journal:  Curr Opin Chem Biol       Date:  2012-05-25       Impact factor: 8.822

Review 7.  Engineering structure and function using thermoresponsive biopolymers.

Authors:  Martha K Pastuszka; J Andrew MacKay
Journal:  Wiley Interdiscip Rev Nanomed Nanobiotechnol       Date:  2015-06-26

Review 8.  The omic approach to parasitic trematode research-a review of techniques and developments within the past 5 years.

Authors:  Orçun Haçarız; Gearóid P Sayers
Journal:  Parasitol Res       Date:  2016-04-28       Impact factor: 2.289

9.  DNA nanotechnology: a future perspective.

Authors:  Muniza Zahid; Byeonghoon Kim; Rafaqat Hussain; Rashid Amin; Sung Ha Park
Journal:  Nanoscale Res Lett       Date:  2013-03-04       Impact factor: 4.703

10.  Computational codon optimization of synthetic gene for protein expression.

Authors:  Bevan Kai-Sheng Chung; Dong-Yup Lee
Journal:  BMC Syst Biol       Date:  2012-10-20
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