Literature DB >> 21601088

From SELEX to cell dual selections for synthetic riboswitches.

Joy Sinha1, Shana Topp, Justin P Gallivan.   

Abstract

Synthetic riboswitches have emerged as useful tools for controlling gene expression to reprogram cellular behavior. However, advancing beyond proof-of-principle experiments requires the ability to quickly generate new synthetic riboswitches from RNA libraries. In this chapter, we provide a step-by-step overview of the process of obtaining synthetic riboswitches for use in Escherichia coli, starting from a randomized RNA library.
Copyright © 2011 Elsevier Inc. All rights reserved.

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Year:  2011        PMID: 21601088     DOI: 10.1016/B978-0-12-385075-1.00009-3

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN: 0076-6879            Impact factor:   1.600


  6 in total

1.  Modularity of select riboswitch expression platforms enables facile engineering of novel genetic regulatory devices.

Authors:  Pablo Ceres; Andrew D Garst; Joan G Marcano-Velázquez; Robert T Batey
Journal:  ACS Synth Biol       Date:  2013-03-28       Impact factor: 5.110

Review 2.  Directed evolution: an evolving and enabling synthetic biology tool.

Authors:  Ryan E Cobb; Tong Si; Huimin Zhao
Journal:  Curr Opin Chem Biol       Date:  2012-06-04       Impact factor: 8.822

3.  Synthetic RNA switches for yeast metabolic engineering: screening recombinant enzyme libraries.

Authors:  Joshua K Michener; Christina D Smolke
Journal:  Methods Mol Biol       Date:  2014

Review 4.  Structure and mechanism of purine-binding riboswitches.

Authors:  Robert T Batey
Journal:  Q Rev Biophys       Date:  2012-07-31       Impact factor: 5.318

5.  Engineering modular 'ON' RNA switches using biological components.

Authors:  Pablo Ceres; Jeremiah J Trausch; Robert T Batey
Journal:  Nucleic Acids Res       Date:  2013-09-02       Impact factor: 16.971

6.  Attempted use of PACE for riboswitch discovery generates three new translational theophylline riboswitch side products.

Authors:  Zachary M Shaver; Stephanie S Bent; Steven R Bilby; Michael Brown; Anna Buser; Itzayana G Cuellar; Athena J Davis; Lindsay Doolan; Fatima C Enriquez; Autumn Estrada; Shelby Herner; J Cody Herron; Andrew M Hunn; Madison Hunter; Hartlee Johnston; Owen Koucky; Christian C Mackley; Dylan Maghini; Devin Mattoon; Haden T McDonald; Hannah Sinks; Austin J Sprague; David Sullivan; Altan Tutar; Avery Umphreys; Chris Watson; Daniel Zweerink; Laurie J Heyer; Jeffrey L Poet; Todd T Eckdahl; A Malcolm Campbell
Journal:  BMC Res Notes       Date:  2018-12-05
  6 in total

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