Literature DB >> 24658329

Coordination of microbial metabolism.

Victor Chubukov1, Luca Gerosa1, Karl Kochanowski1, Uwe Sauer2.   

Abstract

Beyond fuelling cellular activities with building blocks and energy, metabolism also integrates environmental conditions into intracellular signals. The underlying regulatory network is complex and multifaceted: it ranges from slow interactions, such as changing gene expression, to rapid ones, such as the modulation of protein activity via post-translational modification or the allosteric binding of small molecules. In this Review, we outline the coordination of common metabolic tasks, including nutrient uptake, central metabolism, the generation of energy, the supply of amino acids and protein synthesis. Increasingly, a set of key metabolites is recognized to control individual regulatory circuits, which carry out specific functions of information input and regulatory output. Such a modular view of microbial metabolism facilitates an intuitive understanding of the molecular mechanisms that underlie cellular decision making.

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Year:  2014        PMID: 24658329     DOI: 10.1038/nrmicro3238

Source DB:  PubMed          Journal:  Nat Rev Microbiol        ISSN: 1740-1526            Impact factor:   60.633


  151 in total

1.  Control of AmtB-GlnK complex formation by intracellular levels of ATP, ADP, and 2-oxoglutarate.

Authors:  Martha V Radchenko; Jeremy Thornton; Mike Merrick
Journal:  J Biol Chem       Date:  2010-07-18       Impact factor: 5.157

2.  The HPr kinase from Bacillus subtilis is a homo-oligomeric enzyme which exhibits strong positive cooperativity for nucleotide and fructose 1,6-bisphosphate binding.

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Journal:  J Biol Chem       Date:  2000-01-21       Impact factor: 5.157

3.  Internal-sensing machinery directs the activity of the regulatory network in Escherichia coli.

Authors:  Agustino Martínez-Antonio; Sarath Chandra Janga; Heladia Salgado; Julio Collado-Vides
Journal:  Trends Microbiol       Date:  2005-11-28       Impact factor: 17.079

4.  Inducer exclusion in Escherichia coli by non-PTS substrates: the role of the PEP to pyruvate ratio in determining the phosphorylation state of enzyme IIAGlc.

Authors:  B M Hogema; J C Arents; R Bader; K Eijkemans; H Yoshida; H Takahashi; H Aiba; P W Postma
Journal:  Mol Microbiol       Date:  1998-11       Impact factor: 3.501

Review 5.  The role of ammonia metabolism in nitrogen catabolite repression in Saccharomyces cerevisiae.

Authors:  E G ter Schure; N A van Riel; C T Verrips
Journal:  FEMS Microbiol Rev       Date:  2000-01       Impact factor: 16.408

6.  Pyruvate kinase of bacillus subtilis.

Authors:  M Diesterhaft; E Freese
Journal:  Biochim Biophys Acta       Date:  1972-05-12

Review 7.  RNA-Seq: a revolutionary tool for transcriptomics.

Authors:  Zhong Wang; Mark Gerstein; Michael Snyder
Journal:  Nat Rev Genet       Date:  2009-01       Impact factor: 53.242

8.  Protein abundance profiling of the Escherichia coli cytosol.

Authors:  Yasushi Ishihama; Thorsten Schmidt; Juri Rappsilber; Matthias Mann; F Ulrich Hartl; Michael J Kerner; Dmitrij Frishman
Journal:  BMC Genomics       Date:  2008-02-27       Impact factor: 3.969

9.  Predicting cellular growth from gene expression signatures.

Authors:  Edoardo M Airoldi; Curtis Huttenhower; David Gresham; Charles Lu; Amy A Caudy; Maitreya J Dunham; James R Broach; David Botstein; Olga G Troyanskaya
Journal:  PLoS Comput Biol       Date:  2009-01-02       Impact factor: 4.475

10.  Reconstruction and analysis of the genetic and metabolic regulatory networks of the central metabolism of Bacillus subtilis.

Authors:  Anne Goelzer; Fadia Bekkal Brikci; Isabelle Martin-Verstraete; Philippe Noirot; Philippe Bessières; Stéphane Aymerich; Vincent Fromion
Journal:  BMC Syst Biol       Date:  2008-02-26
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  146 in total

1.  Metabolic sensor governing bacterial virulence in Staphylococcus aureus.

Authors:  Yue Ding; Xing Liu; Feifei Chen; Hongxia Di; Bin Xu; Lu Zhou; Xin Deng; Min Wu; Cai-Guang Yang; Lefu Lan
Journal:  Proc Natl Acad Sci U S A       Date:  2014-11-03       Impact factor: 11.205

2.  Real-time metabolome profiling of the metabolic switch between starvation and growth.

Authors:  Hannes Link; Tobias Fuhrer; Luca Gerosa; Nicola Zamboni; Uwe Sauer
Journal:  Nat Methods       Date:  2015-09-14       Impact factor: 28.547

3.  Mapping high-growth phenotypes in the flux space of microbial metabolism.

Authors:  Oriol Güell; Francesco Alessandro Massucci; Francesc Font-Clos; Francesc Sagués; M Ángeles Serrano
Journal:  J R Soc Interface       Date:  2015-09-06       Impact factor: 4.118

4.  Design of a bistable switch to control cellular uptake.

Authors:  Diego A Oyarzún; Madalena Chaves
Journal:  J R Soc Interface       Date:  2015-12-06       Impact factor: 4.118

5.  Predicting growth rate from gene expression.

Authors:  Thomas P Wytock; Adilson E Motter
Journal:  Proc Natl Acad Sci U S A       Date:  2018-12-21       Impact factor: 11.205

6.  Evolution of (p)ppGpp-HPRT regulation through diversification of an allosteric oligomeric interaction.

Authors:  Brent W Anderson; Kuanqing Liu; Christine Wolak; Katarzyna Dubiel; Fukang She; Kenneth A Satyshur; James L Keck; Jue D Wang
Journal:  Elife       Date:  2019-09-25       Impact factor: 8.140

7.  Inter-comparison of the potentially active prokaryotic communities in the halocline sediments of Mediterranean deep-sea hypersaline basins.

Authors:  Konstantinos A Kormas; Maria G Pachiadaki; Hera Karayanni; Edward R Leadbetter; Joan M Bernhard; Virginia P Edgcomb
Journal:  Extremophiles       Date:  2015-07-16       Impact factor: 2.395

8.  Environmental dependence of stationary-phase metabolism in Bacillus subtilis and Escherichia coli.

Authors:  Victor Chubukov; Uwe Sauer
Journal:  Appl Environ Microbiol       Date:  2014-02-28       Impact factor: 4.792

Review 9.  Pseudomonas aeruginosa adaptation and evolution in patients with cystic fibrosis.

Authors:  Elio Rossi; Ruggero La Rosa; Jennifer A Bartell; Rasmus L Marvig; Janus A J Haagensen; Lea M Sommer; Søren Molin; Helle Krogh Johansen
Journal:  Nat Rev Microbiol       Date:  2020-11-19       Impact factor: 60.633

10.  Genome-Scale Architecture of Small Molecule Regulatory Networks and the Fundamental Trade-Off between Regulation and Enzymatic Activity.

Authors:  Ed Reznik; Dimitris Christodoulou; Joshua E Goldford; Emma Briars; Uwe Sauer; Daniel Segrè; Elad Noor
Journal:  Cell Rep       Date:  2017-09-12       Impact factor: 9.423

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