Literature DB >> 21599202

Stochastic differential equation models for ion channel noise in Hodgkin-Huxley neurons.

Joshua H Goldwyn1, Nikita S Imennov, Michael Famulare, Eric Shea-Brown.   

Abstract

The random transitions of ion channels between conducting and nonconducting states generate a source of internal fluctuations in a neuron, known as channel noise. The standard method for modeling the states of ion channels nonlinearly couples continuous-time Markov chains to a differential equation for voltage. Beginning with the work of R. F. Fox and Y.-N. Lu [Phys. Rev. E 49, 3421 (1994)], there have been attempts to generate simpler models that use stochastic differential equation (SDEs) to approximate the stochastic spiking activity produced by Markov chain models. Recent numerical investigations, however, have raised doubts that SDE models can capture the stochastic dynamics of Markov chain models.We analyze three SDE models that have been proposed as approximations to the Markov chain model: one that describes the states of the ion channels and two that describe the states of the ion channel subunits. We show that the former channel-based approach can capture the distribution of channel noise and its effects on spiking in a Hodgkin-Huxley neuron model to a degree not previously demonstrated, but the latter two subunit-based approaches cannot. Our analysis provides intuitive and mathematical explanations for why this is the case. The temporal correlation in the channel noise is determined by the combinatorics of bundling subunits into channels, but the subunit-based approaches do not correctly account for this structure. Our study confirms and elucidates the findings of previous numerical investigations of subunit-based SDE models. Moreover, it presents evidence that Markov chain models of the nonlinear, stochastic dynamics of neural membranes can be accurately approximated by SDEs. This finding opens a door to future modeling work using SDE techniques to further illuminate the effects of ion channel fluctuations on electrically active cells. ©2011 American Physical Society

Entities:  

Mesh:

Substances:

Year:  2011        PMID: 21599202      PMCID: PMC3279159          DOI: 10.1103/PhysRevE.83.041908

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  30 in total

1.  Effects of synaptic noise and filtering on the frequency response of spiking neurons.

Authors:  N Brunel; F S Chance; N Fourcaud; L F Abbott
Journal:  Phys Rev Lett       Date:  2001-03-05       Impact factor: 9.161

2.  Metabolically efficient information processing.

Authors:  V Balasubramanian; D Kimber; M J Berry
Journal:  Neural Comput       Date:  2001-04       Impact factor: 2.026

3.  Optimal intracellular calcium signaling.

Authors:  J W Shuai; P Jung
Journal:  Phys Rev Lett       Date:  2002-01-24       Impact factor: 9.161

4.  Ion-channel noise places limits on the miniaturization of the brain's wiring.

Authors:  A Aldo Faisal; John A White; Simon B Laughlin
Journal:  Curr Biol       Date:  2005-06-21       Impact factor: 10.834

5.  Evaluation of stochastic differential equation approximation of ion channel gating models.

Authors:  Ian C Bruce
Journal:  Ann Biomed Eng       Date:  2009-01-17       Impact factor: 3.934

6.  Effects of I(h) and I(KLT) on the response of the auditory nerve to electrical stimulation in a stochastic Hodgkin-Huxley model.

Authors:  Mohamed H Negm; Ian C Bruce
Journal:  Conf Proc IEEE Eng Med Biol Soc       Date:  2008

7.  The dependence of auditory nerve rate adaptation on electric stimulus parameters, electrode position, and fiber diameter: a computer model study.

Authors:  Jihwan Woo; Charles A Miller; Paul J Abbas
Journal:  J Assoc Res Otolaryngol       Date:  2009-12-22

8.  Spontaneous action potentials due to channel fluctuations.

Authors:  C C Chow; J A White
Journal:  Biophys J       Date:  1996-12       Impact factor: 4.033

9.  Stochastic versions of the Hodgkin-Huxley equations.

Authors:  R F Fox
Journal:  Biophys J       Date:  1997-05       Impact factor: 4.033

Review 10.  Noise in the nervous system.

Authors:  A Aldo Faisal; Luc P J Selen; Daniel M Wolpert
Journal:  Nat Rev Neurosci       Date:  2008-04       Impact factor: 34.870

View more
  25 in total

1.  Methodology of Recurrent Laguerre-Volterra Network for Modeling Nonlinear Dynamic Systems.

Authors:  Kunling Geng; Vasilis Z Marmarelis
Journal:  IEEE Trans Neural Netw Learn Syst       Date:  2016-06-24       Impact factor: 10.451

2.  A temperature rise reduces trial-to-trial variability of locust auditory neuron responses.

Authors:  Monika J B Eberhard; Jan-Hendrik Schleimer; Susanne Schreiber; Bernhard Ronacher
Journal:  J Neurophysiol       Date:  2015-06-03       Impact factor: 2.714

3.  Stochastic representations of ion channel kinetics and exact stochastic simulation of neuronal dynamics.

Authors:  David F Anderson; Bard Ermentrout; Peter J Thomas
Journal:  J Comput Neurosci       Date:  2014-11-19       Impact factor: 1.621

4.  Kölliker-Fuse nuclei regulate respiratory rhythm variability via a gain-control mechanism.

Authors:  Rishi R Dhingra; Mathias Dutschmann; Roberto F Galán; Thomas E Dick
Journal:  Am J Physiol Regul Integr Comp Physiol       Date:  2016-12-14       Impact factor: 3.619

5.  Effects of ion channel noise on neural circuits: an application to the respiratory pattern generator to investigate breathing variability.

Authors:  Haitao Yu; Rishi R Dhingra; Thomas E Dick; Roberto F Galán
Journal:  J Neurophysiol       Date:  2016-10-19       Impact factor: 2.714

6.  Synchronization of stochastic mean field networks of Hodgkin-Huxley neurons with noisy channels.

Authors:  Mireille Bossy; Joaquín Fontbona; Héctor Olivero
Journal:  J Math Biol       Date:  2019-02-02       Impact factor: 2.259

7.  Spike timing precision of neuronal circuits.

Authors:  Deniz Kilinc; Alper Demir
Journal:  J Comput Neurosci       Date:  2018-04-17       Impact factor: 1.621

8.  Simple, fast and accurate implementation of the diffusion approximation algorithm for stochastic ion channels with multiple states.

Authors:  Patricio Orio; Daniel Soudry
Journal:  PLoS One       Date:  2012-05-22       Impact factor: 3.240

9.  Mean-field description and propagation of chaos in networks of Hodgkin-Huxley and FitzHugh-Nagumo neurons.

Authors:  Javier Baladron; Diego Fasoli; Olivier Faugeras; Jonathan Touboul
Journal:  J Math Neurosci       Date:  2012-05-31       Impact factor: 1.300

10.  Toward Robust Cognitive 3D Brain-Inspired Cross-Paradigm System.

Authors:  Abderazek Ben Abdallah; Khanh N Dang
Journal:  Front Neurosci       Date:  2021-06-25       Impact factor: 4.677

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.