Literature DB >> 21597142

Electrochemical protection of thin film electrodes in solid state nanopores.

Stefan Harrer1, Philip S Waggoner, Binquan Luan, Ali Afzali-Ardakani, Dario L Goldfarb, Hongbo Peng, Glenn Martyna, Stephen M Rossnagel, Gustavo A Stolovitzky.   

Abstract

Solid state nanopores are a core element of next-generation single molecule tools in the field of nano-biotechnology. Thin film electrodes integrated into a pore can interact with charges and fields within the pore. In order to keep the nanopore open and thus functional electrochemically induced surface alteration of electrode surfaces and bubble formation inside the pore have to be eliminated. This paper provides electrochemical analyses of nanopores drilled into TiN membranes which in turn were employed as thin film electrodes. We studied physical pore integrity and the occurrence of water decomposition yielding bubble formation inside pores by applying voltages between -4.5 and +4.5 V to membranes in various protection stages continuously for up to 24 h. During potential application pores were exposed to selected electrolyte-solvent systems. We have investigated and successfully eliminated electrochemical pore oxidation and reduction as well as water decomposition inside nanopores of various diameters ranging from 3.5 to 25 nm in 50 nm thick TiN membranes by passivating the nanopores with a plasma-oxidized layer and using a 90% solution of glycerol in water as KCl solvent. Nanopore ionic conductances were measured before and after voltage application in order to test for changes in pore diameter due to electrochemical oxidation or reduction. TEM imaging was used to confirm these observations. While non-passivated pores were electrochemically oxidized, neither electrochemical oxidation nor reduction was observed for passivated pores. Bubble formation through water decomposition could be detected in non-passivated pores in KCl/water solutions but was not observed in 90% glycerol solutions. The use of a protective self-assembled monolayer of hexadecylphosphonic acid (HDPA) was also investigated.

Entities:  

Year:  2011        PMID: 21597142      PMCID: PMC3174014          DOI: 10.1088/0957-4484/22/27/275304

Source DB:  PubMed          Journal:  Nanotechnology        ISSN: 0957-4484            Impact factor:   3.874


  15 in total

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Authors:  Christopher A Merchant; Ken Healy; Meni Wanunu; Vishva Ray; Neil Peterman; John Bartel; Michael D Fischbein; Kimberly Venta; Zhengtang Luo; A T Charlie Johnson; Marija Drndić
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3.  DNA translocation through graphene nanopores.

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Journal:  Nano Lett       Date:  2010-08-11       Impact factor: 11.189

4.  Electrochemical characterization of thin film electrodes toward developing a DNA transistor.

Authors:  Stefan Harrer; Shafaat Ahmed; Ali Afzali-Ardakani; Binquan Luan; Philip S Waggoner; Xiaoyan Shao; Hongbo Peng; Dario L Goldfarb; Glenn J Martyna; Stephen M Rossnagel; Lili Deligianni; Gustavo A Stolovitzky
Journal:  Langmuir       Date:  2010-11-22       Impact factor: 3.882

5.  Sequence dependence of DNA translocation through a nanopore.

Authors:  Kaifu Luo; Tapio Ala-Nissila; See-Chen Ying; Aniket Bhattacharya
Journal:  Phys Rev Lett       Date:  2008-02-05       Impact factor: 9.161

Review 6.  Solid-state nanopores.

Authors:  Cees Dekker
Journal:  Nat Nanotechnol       Date:  2007-03-04       Impact factor: 39.213

7.  Characterization of individual polynucleotide molecules using a membrane channel.

Authors:  J J Kasianowicz; E Brandin; D Branton; D W Deamer
Journal:  Proc Natl Acad Sci U S A       Date:  1996-11-26       Impact factor: 11.205

8.  Beyond the Gene Chip.

Authors:  J B Heng; A Aksimentiev; C Ho; V Dimitrov; T Sorsch; J Miner; W Mansfield; K Schulten; G Timp
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9.  Electrostatic focusing of unlabelled DNA into nanoscale pores using a salt gradient.

Authors:  Meni Wanunu; Will Morrison; Yitzhak Rabin; Alexander Y Grosberg; Amit Meller
Journal:  Nat Nanotechnol       Date:  2009-12-20       Impact factor: 39.213

Review 10.  The potential and challenges of nanopore sequencing.

Authors:  Daniel Branton; David W Deamer; Andre Marziali; Hagan Bayley; Steven A Benner; Thomas Butler; Massimiliano Di Ventra; Slaven Garaj; Andrew Hibbs; Xiaohua Huang; Stevan B Jovanovich; Predrag S Krstic; Stuart Lindsay; Xinsheng Sean Ling; Carlos H Mastrangelo; Amit Meller; John S Oliver; Yuriy V Pershin; J Michael Ramsey; Robert Riehn; Gautam V Soni; Vincent Tabard-Cossa; Meni Wanunu; Matthew Wiggin; Jeffery A Schloss
Journal:  Nat Biotechnol       Date:  2008-10       Impact factor: 54.908

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  6 in total

1.  Stacked graphene-Al2O3 nanopore sensors for sensitive detection of DNA and DNA-protein complexes.

Authors:  Bala Murali Venkatesan; David Estrada; Shouvik Banerjee; Xiaozhong Jin; Vincent E Dorgan; Myung-Ho Bae; Narayana R Aluru; Eric Pop; Rashid Bashir
Journal:  ACS Nano       Date:  2011-12-23       Impact factor: 15.881

2.  Characterizing and controlling the motion of ssDNA in a solid-state nanopore.

Authors:  Binquan Luan; Glenn Martyna; Gustavo Stolovitzky
Journal:  Biophys J       Date:  2011-11-01       Impact factor: 4.033

3.  Fabrication and characterization of nanopores with insulated transverse nanoelectrodes for DNA sensing in salt solution.

Authors:  Ken Healy; Vishva Ray; Lauren J Willis; Neil Peterman; John Bartel; Marija Drndić
Journal:  Electrophoresis       Date:  2012-12       Impact factor: 3.535

Review 4.  Slowing and controlling the translocation of DNA in a solid-state nanopore.

Authors:  Binquan Luan; Gustavo Stolovitzky; Glenn Martyna
Journal:  Nanoscale       Date:  2011-11-14       Impact factor: 7.790

5.  Control of DNA capture by nanofluidic transistors.

Authors:  Kee-Hyun Paik; Yang Liu; Vincent Tabard-Cossa; Matthew J Waugh; David E Huber; J Provine; Roger T Howe; Robert W Dutton; Ronald W Davis
Journal:  ACS Nano       Date:  2012-07-11       Impact factor: 15.881

6.  The dynamics of electron beam scattering on metal membranes: nanopore formation in metal membranes using transmission electron microscopy.

Authors:  Hyun-Mi Kim; Kyeong-Beom Park; Hyung-Jun Kim; Hongsik Chae; Jae-Seok Yu; Kidan Lee; Ki-Bum Kim
Journal:  Nano Converg       Date:  2018-11-12
  6 in total

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