Literature DB >> 21596569

Degrade, move, regroup: signaling control of splicing proteins.

Florian Heyd1, Kristen W Lynch.   

Abstract

With recent advances in microarrays and sequencing it is now relatively straightforward to compare pre-mRNA splicing patterns in different cellular conditions on a genome-wide scale. Such studies have revealed extensive changes in cellular splicing programs in response to stimuli such as neuronal depolarization, DNA damage, immune signaling and cellular metabolic changes. However, for many years our understanding of the signaling pathways responsible for such splicing changes was greatly lacking. Excitingly, over the past few years this gap has begun to close. Recent studies now suggest notable trends in the mechanisms that link cellular stimuli to downstream alternative splicing events. These include regulated synthesis or degradation of splicing factors, differential protein-protein interactions, altered nuclear translocation and changes in transcription elongation.
Copyright © 2011 Elsevier Ltd. All rights reserved.

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Year:  2011        PMID: 21596569      PMCID: PMC3155649          DOI: 10.1016/j.tibs.2011.04.003

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   13.807


  56 in total

1.  RNA polymerase II C-terminal domain mediates regulation of alternative splicing by SRp20.

Authors:  Manuel de la Mata; Alberto R Kornblihtt
Journal:  Nat Struct Mol Biol       Date:  2006-10-08       Impact factor: 15.369

2.  SAP155 Binds to ceramide-responsive RNA cis-element 1 and regulates the alternative 5' splice site selection of Bcl-x pre-mRNA.

Authors:  Autumn Massiello; James R Roesser; Charles E Chalfant
Journal:  FASEB J       Date:  2006-06-21       Impact factor: 5.191

3.  SR proteins function in coupling RNAP II transcription to pre-mRNA splicing.

Authors:  Rita Das; Jiong Yu; Zuo Zhang; Melanie P Gygi; Adrian R Krainer; Steven P Gygi; Robin Reed
Journal:  Mol Cell       Date:  2007-06-22       Impact factor: 17.970

Review 4.  Splicing regulation in neurologic disease.

Authors:  Donny D Licatalosi; Robert B Darnell
Journal:  Neuron       Date:  2006-10-05       Impact factor: 17.173

Review 5.  Arginine methylation an emerging regulator of protein function.

Authors:  Mark T Bedford; Stéphane Richard
Journal:  Mol Cell       Date:  2005-04-29       Impact factor: 17.970

6.  ATM and ATR pathways signal alternative splicing of Drosophila TAF1 pre-mRNA in response to DNA damage.

Authors:  Rebeccah J Katzenberger; Matthew S Marengo; David A Wassarman
Journal:  Mol Cell Biol       Date:  2006-10-09       Impact factor: 4.272

7.  Global analysis of alternative splicing during T-cell activation.

Authors:  Joanna Y Ip; Alan Tong; Qun Pan; Justin D Topp; Benjamin J Blencowe; Kristen W Lynch
Journal:  RNA       Date:  2007-02-16       Impact factor: 4.942

Review 8.  Regulation of apoptosis by alternative pre-mRNA splicing.

Authors:  Christian Schwerk; Klaus Schulze-Osthoff
Journal:  Mol Cell       Date:  2005-07-01       Impact factor: 17.970

9.  Depolarization and CaM kinase IV modulate NMDA receptor splicing through two essential RNA elements.

Authors:  Ji-Ann Lee; Yi Xing; David Nguyen; Jiuyong Xie; Christopher J Lee; Douglas L Black
Journal:  PLoS Biol       Date:  2007-02       Impact factor: 8.029

10.  Exon silencing by UAGG motifs in response to neuronal excitation.

Authors:  Ping An; Paula J Grabowski
Journal:  PLoS Biol       Date:  2007-02       Impact factor: 8.029

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  47 in total

1.  The Akt-SRPK-SR axis constitutes a major pathway in transducing EGF signaling to regulate alternative splicing in the nucleus.

Authors:  Zhihong Zhou; Jinsong Qiu; Wen Liu; Yu Zhou; Ryan M Plocinik; Hairi Li; Qidong Hu; Gourisanker Ghosh; Joseph A Adams; Michael G Rosenfeld; Xiang-Dong Fu
Journal:  Mol Cell       Date:  2012-06-21       Impact factor: 17.970

Review 2.  The pathogenicity of splicing defects: mechanistic insights into pre-mRNA processing inform novel therapeutic approaches.

Authors:  Elisabeth Daguenet; Gwendal Dujardin; Juan Valcárcel
Journal:  EMBO Rep       Date:  2015-11-13       Impact factor: 8.807

Review 3.  Emerging mechanisms and consequences of calcium regulation of alternative splicing in neurons and endocrine cells.

Authors:  Aleh Razanau; Jiuyong Xie
Journal:  Cell Mol Life Sci       Date:  2013-06-26       Impact factor: 9.261

4.  BRCA1 exon 11 a model of long exon splicing regulation.

Authors:  Michela Raponi; Lindsay D Smith; Marco Silipo; Cristiana Stuani; Emanuele Buratti; Diana Baralle
Journal:  RNA Biol       Date:  2014-03-18       Impact factor: 4.652

5.  Genome-wide RNAi screens in human brain tumor isolates reveal a novel viability requirement for PHF5A.

Authors:  Christopher G Hubert; Robert K Bradley; Yu Ding; Chad M Toledo; Jacob Herman; Kyobi Skutt-Kakaria; Emily J Girard; Jerry Davison; Jason Berndt; Philip Corrin; Justin Hardcastle; Ryan Basom; Jeffery J Delrow; Thomas Webb; Steven M Pollard; Jeongwu Lee; James M Olson; Patrick J Paddison
Journal:  Genes Dev       Date:  2013-05-01       Impact factor: 11.361

Review 6.  Differential evolution of signal-responsive RNA elements and upstream factors that control alternative splicing.

Authors:  Jiuyong Xie
Journal:  Cell Mol Life Sci       Date:  2014-07-27       Impact factor: 9.261

7.  Alternative splicing of mini-exons in the Arabidopsis leaf rust receptor-like kinase LRK10 genes affects subcellular localisation.

Authors:  Ki Hun Shin; Seung Hwan Yang; Jun Yong Lee; Che Woo Lim; Sung Chul Lee; John W S Brown; Sang Hyon Kim
Journal:  Plant Cell Rep       Date:  2014-12-16       Impact factor: 4.570

8.  Characterization of cis-acting elements that control oscillating alternative splicing.

Authors:  Gesine Goldammer; Alexander Neumann; Miriam Strauch; Michaela Müller-McNicoll; Florian Heyd; Marco Preußner
Journal:  RNA Biol       Date:  2018-09-10       Impact factor: 4.652

9.  An Rtf2 Domain-Containing Protein Influences Pre-mRNA Splicing and Is Essential for Embryonic Development in Arabidopsis thaliana.

Authors:  Taku Sasaki; Tatsuo Kanno; Shih-Chieh Liang; Pao-Yang Chen; Wen-Wei Liao; Wen-Dar Lin; Antonius J M Matzke; Marjori Matzke
Journal:  Genetics       Date:  2015-03-27       Impact factor: 4.562

Review 10.  Regulation of splicing by SR proteins and SR protein-specific kinases.

Authors:  Zhihong Zhou; Xiang-Dong Fu
Journal:  Chromosoma       Date:  2013-03-24       Impact factor: 4.316

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