Literature DB >> 21593606

tmRNA on its way through the ribosome: two steps of resume, and what next?

Jie Fu1, Yaser Hashem, Jacek Wower, Joachim Frank.   

Abstract

Trans-translation is a universal quality-control process eubacteria use to degrade incompletely synthesized proteins and rescue ribosome stalled on defective mRNAs. This process is facilitated by a ribonucleoprotein complex composed of transfer-messenger RNA (tmRNA)-a chimera made of a tRNA-like molecule and a short open reading frame (ORF) -and small protein B (SmpB). Determination of the structure of tmRNA and SmpB in complex with the ribosome, at the stage when translation has resumed on tmRNA, has provided an increased understanding of the structure of tmRNA as it transits the ribosome, and unique insights into the complex mechanism of template switching on the ribosome and SmpB-driven selection of the correct reading frame on tmRNA's ORF.

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Year:  2011        PMID: 21593606      PMCID: PMC3225978          DOI: 10.4161/rna.8.4.15585

Source DB:  PubMed          Journal:  RNA Biol        ISSN: 1547-6286            Impact factor:   4.652


  38 in total

1.  SmpB functions in various steps of trans-translation.

Authors:  Kyoko Hanawa-Suetsugu; Mitsuru Takagi; Hachiro Inokuchi; Hyouta Himeno; Akira Muto
Journal:  Nucleic Acids Res       Date:  2002-04-01       Impact factor: 16.971

2.  Structural studies of the tRNA domain of tmRNA.

Authors:  S M Stagg; A A Frazer-Abel; P J Hagerman; S C Harvey
Journal:  J Mol Biol       Date:  2001-06-08       Impact factor: 5.469

3.  Visualizing tmRNA entry into a stalled ribosome.

Authors:  Mikel Valle; Reynald Gillet; Sukhjit Kaur; Anke Henne; V Ramakrishnan; Joachim Frank
Journal:  Science       Date:  2003-04-04       Impact factor: 47.728

4.  Incorporation of aminoacyl-tRNA into the ribosome as seen by cryo-electron microscopy.

Authors:  Mikel Valle; Andrey Zavialov; Wen Li; Scott M Stagg; Jayati Sengupta; Rikke C Nielsen; Poul Nissen; Stephen C Harvey; Måns Ehrenberg; Joachim Frank
Journal:  Nat Struct Biol       Date:  2003-10-19

5.  Locking and unlocking of ribosomal motions.

Authors:  Mikel Valle; Andrey Zavialov; Jayati Sengupta; Urmila Rawat; Måns Ehrenberg; Joachim Frank
Journal:  Cell       Date:  2003-07-11       Impact factor: 41.582

6.  Crystal structure of the transfer-RNA domain of transfer-messenger RNA in complex with SmpB.

Authors:  Sascha Gutmann; Peter W Haebel; Laurent Metzinger; Markus Sutter; Brice Felden; Nenad Ban
Journal:  Nature       Date:  2003-08-07       Impact factor: 49.962

7.  tRNA slippage at the tmRNA resume codon.

Authors:  Michael J Trimble; Amy Minnicus; Kelly P Williams
Journal:  RNA       Date:  2004-05       Impact factor: 4.942

8.  tmRNA-SmpB: a journey to the centre of the bacterial ribosome.

Authors:  Félix Weis; Patrick Bron; Emmanuel Giudice; Jean-Paul Rolland; Daniel Thomas; Brice Felden; Reynald Gillet
Journal:  EMBO J       Date:  2010-10-15       Impact factor: 11.598

9.  Role of a peptide tagging system in degradation of proteins synthesized from damaged messenger RNA.

Authors:  K C Keiler; P R Waller; R T Sauer
Journal:  Science       Date:  1996-02-16       Impact factor: 47.728

10.  SmpB: a protein that binds to double-stranded segments in tmRNA and tRNA.

Authors:  Jacek Wower; Christian W Zwieb; David W Hoffman; Iwona K Wower
Journal:  Biochemistry       Date:  2002-07-16       Impact factor: 3.162

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  2 in total

1.  Requirements for resuming translation in chimeric transfer-messenger RNAs of Escherichia coli and Mycobacterium tuberculosis.

Authors:  Iwona K Wower; Christian Zwieb; Jacek Wower
Journal:  BMC Mol Biol       Date:  2014-09-15       Impact factor: 2.946

2.  Structures of Mycobacterium smegmatis 70S ribosomes in complex with HPF, tmRNA, and P-tRNA.

Authors:  Satabdi Mishra; Tofayel Ahmed; Anu Tyagi; Jian Shi; Shashi Bhushan
Journal:  Sci Rep       Date:  2018-09-11       Impact factor: 4.379

  2 in total

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