Literature DB >> 21592774

Gene dispensability.

Ryszard Korona1.   

Abstract

Genome-wide mutagenesis studies indicate that up to about 90% of genes in bacteria and 80% in eukaryotes can be inactivated individually leaving an organism viable, often seemingly unaffected. Several strategies are used to learn what these apparently dispensable genes contribute to fitness. Assays of growth under hundreds of physical and chemical stresses are among the most effective experimental approaches. Comparative studies of genomic DNA sequences continue to be valuable in discriminating between the core bacterial genome and the more variable niche-specific genes. The concept of the core genome appears currently unfeasible for eukaryotes but progress has been made in understanding why they contain numerous gene duplicates.
Copyright © 2011 Elsevier Ltd. All rights reserved.

Mesh:

Year:  2011        PMID: 21592774     DOI: 10.1016/j.copbio.2011.04.017

Source DB:  PubMed          Journal:  Curr Opin Biotechnol        ISSN: 0958-1669            Impact factor:   9.740


  8 in total

1.  Integration of new genes into cellular networks, and their structural maturation.

Authors:  György Abrusán
Journal:  Genetics       Date:  2013-09-20       Impact factor: 4.562

Review 2.  Evolution by gene loss.

Authors:  Ricard Albalat; Cristian Cañestro
Journal:  Nat Rev Genet       Date:  2016-04-18       Impact factor: 53.242

3.  Power provides protection: Genetic robustness in yeast depends on the capacity to generate energy.

Authors:  Marcin Plech; Katarzyna Tomala; Hanna Tutaj; Dominika Ewa Piwcewicz; J Arjan G M de Visser; Ryszard Korona
Journal:  PLoS Genet       Date:  2017-05-11       Impact factor: 5.917

4.  Feature Identification of Compensatory Gene Pairs without Sequence Homology in Yeast.

Authors:  Chien-Hua Peng; Shu-Hsi Lin; Shih-Chi Peng; Ping-Chiang Lyu; Masanori Arita; Chuan-Yi Tang
Journal:  Comp Funct Genomics       Date:  2012-08-16

5.  Genomic repeats, misassembly and reannotation: a case study with long-read resequencing of Porphyromonas gingivalis reference strains.

Authors:  Luis Acuña-Amador; Aline Primot; Edouard Cadieu; Alain Roulet; Frédérique Barloy-Hubler
Journal:  BMC Genomics       Date:  2018-01-16       Impact factor: 3.969

6.  Gracob: a novel graph-based constant-column biclustering method for mining growth phenotype data.

Authors:  Majed Alzahrani; Hiroyuki Kuwahara; Wei Wang; Xin Gao
Journal:  Bioinformatics       Date:  2017-08-15       Impact factor: 6.937

7.  Defining Essentiality Score of Protein-Coding Genes and Long Noncoding RNAs.

Authors:  Pan Zeng; Ji Chen; Yuhong Meng; Yuan Zhou; Jichun Yang; Qinghua Cui
Journal:  Front Genet       Date:  2018-10-09       Impact factor: 4.599

Review 8.  Genotype to Phenotype: CRISPR Gene Editing Reveals Genetic Compensation as a Mechanism for Phenotypic Disjunction of Morphants and Mutants.

Authors:  Cristy M Salanga; Matthew C Salanga
Journal:  Int J Mol Sci       Date:  2021-03-27       Impact factor: 5.923

  8 in total

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