Literature DB >> 21591720

Effect of protein environment on electronically excited and ionized states of the green fluorescent protein chromophore.

Ksenia B Bravaya1, Maria G Khrenova, Bella L Grigorenko, Alexander V Nemukhin, Anna I Krylov.   

Abstract

The effect of the protein environment on the electronic structure of the green fluorescent protein (GFP) chromophore is investigated by QM/MM (quantum mechanics/molecular mechanics) calculations. The protein has very small effect on the excitation energy of the bright absorbing and the lowest triplet states of the anionic GFP chromophore, deprotonated 4-hydroxybenzylidene-2,3-dimethylimidazolinone (HBDI) anion, however, it increases vertical detachment energy from 2.5 eV (gas-phase deprotonated HBDI anion) to 5.0 eV (solvated protein). We also investigated possible existence of the charge-transfer-to-solvent (CTTS) states associated with the GFP chromophore. Although precursors of such states appear in cluster calculations, a tightly packed structure of the protein prevents the formation of the CTTS states in this system. Motivated by a recently discovered new type of photoconversion, oxidative redding, we characterized the redox properties of GFP. The computed standard reduction potential of the anionic form of GFP is 0.47 V (for the GFP(•) + 1e → GFP(-) reaction), and the reduction potential at physiological conditions (pH 7, T = 25 °C) is 0.06 V.

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Year:  2011        PMID: 21591720     DOI: 10.1021/jp2020269

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  8 in total

1.  Insight into the common mechanism of the chromophore formation in the red fluorescent proteins: the elusive blue intermediate revealed.

Authors:  Ksenia B Bravaya; Oksana M Subach; Nadezhda Korovina; Vladislav V Verkhusha; Anna I Krylov
Journal:  J Am Chem Soc       Date:  2012-01-26       Impact factor: 15.419

2.  Benchmarking the Performance of Time-Dependent Density Functional Theory Methods on Biochromophores.

Authors:  Yihan Shao; Ye Mei; Dage Sundholm; Ville R I Kaila
Journal:  J Chem Theory Comput       Date:  2019-12-26       Impact factor: 6.006

3.  First-principle protocol for calculating ionization energies and redox potentials of solvated molecules and ions: theory and application to aqueous phenol and phenolate.

Authors:  Debashree Ghosh; Anirban Roy; Robert Seidel; Bernd Winter; Stephen Bradforth; Anna I Krylov
Journal:  J Phys Chem B       Date:  2012-05-04       Impact factor: 2.991

4.  Chromophore photoreduction in red fluorescent proteins is responsible for bleaching and phototoxicity.

Authors:  Russell B Vegh; Ksenia B Bravaya; Dmitry A Bloch; Andreas S Bommarius; Laren M Tolbert; Michael Verkhovsky; Anna I Krylov; Kyril M Solntsev
Journal:  J Phys Chem B       Date:  2014-04-21       Impact factor: 2.991

5.  The mechanism of a green fluorescent protein proton shuttle unveiled in the time-resolved frequency domain by excited state ab initio dynamics.

Authors:  Greta Donati; Alessio Petrone; Pasquale Caruso; Nadia Rega
Journal:  Chem Sci       Date:  2018-01-02       Impact factor: 9.825

6.  ortho and para chromophores of green fluorescent protein: controlling electron emission and internal conversion.

Authors:  Conor McLaughlin; Mariana Assmann; Michael A Parkes; Joanne L Woodhouse; Ross Lewin; Helen C Hailes; Graham A Worth; Helen H Fielding
Journal:  Chem Sci       Date:  2016-11-07       Impact factor: 9.825

7.  Excited-State Proton-Transfer-Induced Trapping Enhances the Fluorescence Emission of a Locked GFP Chromophore.

Authors:  Xiang-Yang Liu; Xue-Ping Chang; Shu-Hua Xia; Ganglong Cui; Walter Thiel
Journal:  J Chem Theory Comput       Date:  2016-01-15       Impact factor: 6.006

8.  A Not Obvious Correlation Between the Structure of Green Fluorescent Protein Chromophore Pocket and Hydrogen Bond Dynamics: A Choreography From ab initio Molecular Dynamics.

Authors:  Federico Coppola; Fulvio Perrella; Alessio Petrone; Greta Donati; Nadia Rega
Journal:  Front Mol Biosci       Date:  2020-10-27
  8 in total

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