Literature DB >> 21589609

(2S)-2-[(2S*,5R*,6R*)-5,6-Dimeth-oxy-5,6-dimethyl-1,4-dioxan-2-yl]-1-[(S)-1,1-dimethyl-ethylsulfon-yl]aziridine.

Toni Moragas Solà, William Lewis, Sampada V Bettigeri, Robert A Stockman, David C Forbes.   

Abstract

The reaction of a sulfur ylide with a chiral non-racemic sulfinyl imine afforded the desired aziridine in excellent yield and subsequent oxidation of the sulfinyl moiety dissolved in anhydrous dichloro-methane using a 75% aqueous solution of 3-chloro-per-oxy-benzoic acid afforded the title compound, C(14)H(27)NO(6)S. The configuration of the newly formed stereogenic center at the point of attachment of the 1,4-dioxane ring to the aziridine ring is S. The configurations of the pre-existing sites 2-, 5-, and 6-positions of the 1,4-dioxane ring prior to reaction of sulfinyl imine with the sulfur ylide are S, R, and R, respectively. The C-N bond lengths of the aziridine are 1.478 (2) and 1.486 (2) Å.

Entities:  

Year:  2010        PMID: 21589609      PMCID: PMC3011582          DOI: 10.1107/S1600536810048816

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the first synthesis of the title compound, see: Forbes et al. (2009 ▶). For the use of sulfinyl imines in the preparation of aziridines, see: Forbes et al. (2009 ▶); Chigboh et al. (2008 ▶); Morton et al. (2006 ▶). For a review on the use sulfur ylide technologies in the preparation of three-membered rings, see: McGarrigle et al. (2007 ▶). For the use of tert-butyl sulfinyl groups as stereodiscriminating groups, see: Ellman et al. (2002 ▶); Wakayama & Ellman (2009 ▶). For the use of three-carbon building blocks in the assembly of systems of medicinal significance, specifically HIV protease inhibitors, see: Izawa & Onishi (2006 ▶); Honda et al. (2004 ▶).

Experimental

Crystal data

C14H27NO6S M = 337.43 Monoclinic, a = 8.31483 (9) Å b = 10.31672 (10) Å c = 10.33015 (11) Å β = 91.0961 (10)° V = 885.98 (2) Å3 Z = 2 Cu Kα radiation μ = 1.86 mm−1 T = 90 K 0.95 × 0.67 × 0.15 mm

Data collection

Oxford Diffraction SuperNova, single source at offset, Atlas diffractometer Absorption correction: analytical [CrysAlis PRO (Oxford Diffraction, 2010) ▶; analytical numeric absorption correction using a multifaceted crystal model (Clark & Reid, 1995 ▶)] T min = 0.320, T max = 0.764 48647 measured reflections 3548 independent reflections 3532 reflections with I > 2σ(I) R int = 0.082

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.104 S = 1.10 3548 reflections 206 parameters 1 restraint H-atom parameters constrained Δρmax = 0.25 e Å−3 Δρmin = −0.36 e Å−3 Absolute structure: Flack (1983 ▶), 1653 Friedel pairs Flack parameter: −0.009 (13) Data collection: CrysAlis PRO (Oxford Diffraction, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: OLEX2 (Dolomanov et al., 2009 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810048816/hb5738sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810048816/hb5738Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H27NO6SF(000) = 364
Mr = 337.43Dx = 1.265 Mg m3
Monoclinic, P21Cu Kα radiation, λ = 1.5418 Å
Hall symbol: P 2ybCell parameters from 44949 reflections
a = 8.31483 (9) Åθ = 4.3–73.3°
b = 10.31672 (10) ŵ = 1.86 mm1
c = 10.33015 (11) ÅT = 90 K
β = 91.0961 (10)°Slab, colourless
V = 885.98 (2) Å30.95 × 0.67 × 0.15 mm
Z = 2
Oxford Diffraction SuperNova, single source at offset, Atlas diffractometer3548 independent reflections
Radiation source: SuperNova (Cu) X-ray Source3532 reflections with I > 2σ(I)
mirrorRint = 0.082
Detector resolution: 10.3613 pixels mm-1θmax = 73.4°, θmin = 4.3°
ω scansh = −10→10
Absorption correction: analytical [CrysAlis PRO (Oxford Diffraction, 2010); analytical numeric absorption correction using a multifaceted crystal model (Clark & Reid, 1995)]k = −12→12
Tmin = 0.320, Tmax = 0.764l = −12→12
48647 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.038H-atom parameters constrained
wR(F2) = 0.104w = 1/[σ2(Fo2) + (0.0774P)2 + 0.1298P] where P = (Fo2 + 2Fc2)/3
S = 1.10(Δ/σ)max < 0.001
3548 reflectionsΔρmax = 0.25 e Å3
206 parametersΔρmin = −0.35 e Å3
1 restraintAbsolute structure: Flack (1983), 1653 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: −0.009 (13)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.37564 (17)0.58231 (13)0.58518 (14)0.0196 (3)
C20.5315 (2)0.51956 (18)0.61615 (16)0.0205 (3)
H20.55880.44120.56390.025*
C30.5278 (2)0.6453 (2)0.54586 (19)0.0284 (4)
H3A0.56310.72380.59370.034*
H3B0.55390.64480.45280.034*
C40.56425 (18)0.51094 (17)0.75921 (15)0.0186 (3)
H40.53120.59350.80190.022*
O50.73405 (13)0.49225 (12)0.77640 (10)0.0181 (2)
C60.7813 (2)0.48353 (17)0.90943 (15)0.0190 (3)
C70.6875 (2)0.37256 (17)0.97603 (16)0.0199 (3)
O80.51910 (14)0.38873 (12)0.95304 (11)0.0205 (3)
C90.4763 (2)0.39781 (17)0.81885 (16)0.0198 (3)
H9A0.35870.41050.80870.024*
H9B0.50550.31650.77410.024*
O100.73723 (16)0.59700 (13)0.97601 (13)0.0243 (3)
C110.8058 (3)0.7144 (2)0.9290 (2)0.0368 (5)
H11B0.79770.71600.83420.055*
H11C0.91920.71920.95620.055*
H11A0.74760.78870.96430.055*
C120.9618 (2)0.46183 (19)0.90905 (17)0.0238 (4)
H12A1.00410.46230.99830.036*
H12C1.01310.53120.85980.036*
H12B0.98500.37800.86890.036*
O130.74372 (15)0.25843 (12)0.91606 (12)0.0219 (3)
C140.6670 (2)0.14069 (18)0.95495 (18)0.0261 (4)
H14C0.69120.07180.89300.039*
H14A0.55040.15410.95720.039*
H14B0.70680.11571.04130.039*
C150.7090 (2)0.3703 (2)1.12238 (17)0.0293 (4)
H15A0.67860.45471.15800.044*
H15C0.82190.35221.14490.044*
H15B0.64060.30261.15870.044*
S160.26511 (4)0.50297 (4)0.47432 (3)0.02020 (12)
O170.21224 (16)0.38671 (12)0.53743 (14)0.0278 (3)
O180.35073 (16)0.48822 (16)0.35537 (13)0.0323 (3)
C190.09768 (19)0.61192 (18)0.45030 (16)0.0205 (3)
C200.1621 (2)0.74360 (18)0.40680 (19)0.0267 (4)
H20A0.23010.78070.47590.040*
H20C0.07180.80210.38800.040*
H20B0.22560.73230.32870.040*
C210.0075 (2)0.62361 (19)0.57736 (18)0.0264 (4)
H21B−0.03860.53930.59980.040*
H21C−0.07900.68760.56730.040*
H21A0.08220.65150.64640.040*
C22−0.0086 (2)0.5508 (2)0.3442 (2)0.0338 (4)
H22B0.05120.54650.26340.051*
H22C−0.10540.60370.33080.051*
H22A−0.03950.46310.37040.051*
U11U22U33U12U13U23
N10.0192 (7)0.0145 (7)0.0251 (7)−0.0006 (5)0.0015 (5)0.0016 (5)
C20.0174 (7)0.0205 (9)0.0239 (8)0.0015 (6)0.0039 (6)0.0021 (6)
C30.0226 (8)0.0290 (9)0.0335 (9)−0.0073 (7)0.0004 (7)0.0119 (8)
C40.0168 (7)0.0169 (8)0.0221 (7)−0.0004 (7)0.0040 (5)0.0012 (6)
O50.0171 (5)0.0175 (5)0.0199 (5)−0.0001 (5)0.0038 (4)0.0014 (5)
C60.0200 (7)0.0165 (8)0.0207 (7)−0.0008 (6)0.0033 (6)−0.0021 (6)
C70.0217 (9)0.0182 (8)0.0200 (7)−0.0015 (7)0.0041 (6)0.0003 (6)
O80.0210 (6)0.0214 (6)0.0192 (5)−0.0015 (5)0.0055 (4)0.0001 (4)
C90.0194 (8)0.0183 (8)0.0219 (7)−0.0021 (6)0.0022 (6)0.0006 (6)
O100.0259 (6)0.0176 (6)0.0297 (7)−0.0045 (5)0.0081 (5)−0.0067 (5)
C110.0378 (12)0.0178 (9)0.0553 (13)−0.0092 (8)0.0160 (10)−0.0113 (9)
C120.0195 (8)0.0272 (9)0.0248 (8)−0.0014 (6)0.0018 (6)0.0020 (7)
O130.0252 (6)0.0164 (6)0.0244 (6)0.0008 (5)0.0077 (5)0.0020 (5)
C140.0285 (9)0.0189 (8)0.0312 (9)−0.0007 (7)0.0089 (7)0.0066 (7)
C150.0326 (9)0.0358 (10)0.0196 (8)−0.0043 (8)0.0031 (7)0.0015 (8)
S160.0213 (2)0.0156 (2)0.0238 (2)0.00156 (15)0.00127 (14)−0.00083 (14)
O170.0297 (7)0.0131 (6)0.0404 (7)−0.0024 (5)−0.0035 (5)0.0021 (5)
O180.0329 (7)0.0361 (8)0.0281 (6)0.0092 (6)0.0054 (5)−0.0064 (6)
C190.0188 (8)0.0192 (8)0.0235 (8)0.0012 (6)0.0024 (6)0.0046 (6)
C200.0278 (9)0.0205 (8)0.0321 (9)0.0031 (7)0.0087 (7)0.0081 (7)
C210.0237 (8)0.0248 (9)0.0310 (9)0.0049 (7)0.0093 (7)0.0073 (7)
C220.0289 (9)0.0398 (11)0.0323 (9)−0.0014 (8)−0.0068 (8)0.0023 (9)
N1—C21.478 (2)C12—H12A0.9800
N1—C31.486 (2)C12—H12C0.9800
N1—S161.6690 (14)C12—H12B0.9800
C2—C31.487 (3)O13—C141.433 (2)
C2—C41.500 (2)C14—H14C0.9800
C2—H21.0000C14—H14A0.9800
C3—H3A0.9900C14—H14B0.9800
C3—H3B0.9900C15—H15A0.9800
C4—O51.4326 (18)C15—H15C0.9800
C4—C91.515 (2)C15—H15B0.9800
C4—H41.0000S16—O171.4380 (14)
O5—C61.4248 (18)S16—O181.4399 (14)
C6—O101.410 (2)S16—C191.8027 (17)
C6—C121.518 (2)C19—C211.529 (2)
C6—C71.553 (2)C19—C221.531 (3)
C7—O131.414 (2)C19—C201.531 (2)
C7—O81.425 (2)C20—H20A0.9800
C7—C151.519 (2)C20—H20C0.9800
O8—C91.428 (2)C20—H20B0.9800
C9—H9A0.9900C21—H21B0.9800
C9—H9B0.9900C21—H21C0.9800
O10—C111.428 (2)C21—H21A0.9800
C11—H11B0.9800C22—H22B0.9800
C11—H11C0.9800C22—H22C0.9800
C11—H11A0.9800C22—H22A0.9800
C2—N1—C360.21 (11)C6—C12—H12C109.5
C2—N1—S16113.74 (11)H12A—C12—H12C109.5
C3—N1—S16119.18 (12)C6—C12—H12B109.5
N1—C2—C360.17 (11)H12A—C12—H12B109.5
N1—C2—C4112.41 (14)H12C—C12—H12B109.5
C3—C2—C4122.30 (16)C7—O13—C14115.48 (12)
N1—C2—H2116.4O13—C14—H14C109.5
C3—C2—H2116.4O13—C14—H14A109.5
C4—C2—H2116.4H14C—C14—H14A109.5
N1—C3—C259.62 (11)O13—C14—H14B109.5
N1—C3—H3A117.8H14C—C14—H14B109.5
C2—C3—H3A117.8H14A—C14—H14B109.5
N1—C3—H3B117.8C7—C15—H15A109.5
C2—C3—H3B117.8C7—C15—H15C109.5
H3A—C3—H3B114.9H15A—C15—H15C109.5
O5—C4—C2106.87 (12)C7—C15—H15B109.5
O5—C4—C9109.16 (13)H15A—C15—H15B109.5
C2—C4—C9111.49 (13)H15C—C15—H15B109.5
O5—C4—H4109.8O17—S16—O18117.33 (9)
C2—C4—H4109.8O17—S16—N1105.49 (7)
C9—C4—H4109.8O18—S16—N1111.26 (8)
C6—O5—C4112.39 (11)O17—S16—C19109.91 (8)
O10—C6—O5110.41 (13)O18—S16—C19109.97 (8)
O10—C6—C12112.95 (14)N1—S16—C19101.67 (8)
O5—C6—C12105.14 (13)C21—C19—C22111.19 (15)
O10—C6—C7104.98 (13)C21—C19—C20111.23 (15)
O5—C6—C7110.01 (13)C22—C19—C20110.84 (15)
C12—C6—C7113.42 (14)C21—C19—S16108.74 (11)
O13—C7—O8110.88 (13)C22—C19—S16105.99 (14)
O13—C7—C15112.93 (15)C20—C19—S16108.67 (12)
O8—C7—C15105.33 (13)C19—C20—H20A109.5
O13—C7—C6104.27 (13)C19—C20—H20C109.5
O8—C7—C6109.87 (14)H20A—C20—H20C109.5
C15—C7—C6113.65 (15)C19—C20—H20B109.5
C7—O8—C9113.28 (12)H20A—C20—H20B109.5
O8—C9—C4109.40 (13)H20C—C20—H20B109.5
O8—C9—H9A109.8C19—C21—H21B109.5
C4—C9—H9A109.8C19—C21—H21C109.5
O8—C9—H9B109.8H21B—C21—H21C109.5
C4—C9—H9B109.8C19—C21—H21A109.5
H9A—C9—H9B108.2H21B—C21—H21A109.5
C6—O10—C11115.42 (13)H21C—C21—H21A109.5
O10—C11—H11B109.5C19—C22—H22B109.5
O10—C11—H11C109.5C19—C22—H22C109.5
H11B—C11—H11C109.5H22B—C22—H22C109.5
O10—C11—H11A109.5C19—C22—H22A109.5
H11B—C11—H11A109.5H22B—C22—H22A109.5
H11C—C11—H11A109.5H22C—C22—H22A109.5
C6—C12—H12A109.5
S16—N1—C2—C3111.22 (14)C6—C7—O8—C955.06 (17)
C3—N1—C2—C4115.46 (17)C7—O8—C9—C4−58.42 (18)
S16—N1—C2—C4−133.32 (13)O5—C4—C9—O858.54 (17)
S16—N1—C3—C2−102.22 (14)C2—C4—C9—O8176.38 (13)
C4—C2—C3—N1−99.05 (17)O5—C6—O10—C11−59.72 (19)
N1—C2—C4—O5−160.31 (14)C12—C6—O10—C1157.7 (2)
C3—C2—C4—O5−92.39 (19)C7—C6—O10—C11−178.25 (16)
N1—C2—C4—C980.49 (18)O8—C7—O13—C14−57.86 (17)
C3—C2—C4—C9148.40 (16)C15—C7—O13—C1460.08 (19)
C2—C4—O5—C6179.52 (14)C6—C7—O13—C14−176.06 (14)
C9—C4—O5—C6−59.78 (17)C2—N1—S16—O1770.35 (13)
C4—O5—C6—O10−58.81 (16)C3—N1—S16—O17138.26 (13)
C4—O5—C6—C12179.07 (14)C2—N1—S16—O18−57.90 (14)
C4—O5—C6—C756.60 (17)C3—N1—S16—O1810.01 (16)
O10—C6—C7—O13−174.97 (12)C2—N1—S16—C19−174.94 (12)
O5—C6—C7—O1366.24 (15)C3—N1—S16—C19−107.03 (14)
C12—C6—C7—O13−51.20 (17)O17—S16—C19—C2148.33 (14)
O10—C6—C7—O866.15 (16)O18—S16—C19—C21178.96 (13)
O5—C6—C7—O8−52.65 (17)N1—S16—C19—C21−63.07 (13)
C12—C6—C7—O8−170.08 (13)O17—S16—C19—C22−71.29 (14)
O10—C6—C7—C15−51.58 (18)O18—S16—C19—C2259.34 (14)
O5—C6—C7—C15−170.38 (14)N1—S16—C19—C22177.31 (12)
C12—C6—C7—C1572.19 (19)O17—S16—C19—C20169.54 (12)
O13—C7—O8—C9−59.68 (17)O18—S16—C19—C20−59.83 (14)
C15—C7—O8—C9177.84 (14)N1—S16—C19—C2058.14 (13)
  7 in total

Review 1.  Industrial syntheses of the central core molecules of HIV protease inhibitors.

Authors:  Kunisuke Izawa; Tomoyuki Onishi
Journal:  Chem Rev       Date:  2006-07       Impact factor: 60.622

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Chalcogenides as organocatalysts.

Authors:  Eoghan M McGarrigle; Eddie L Myers; Ona Illa; Michael A Shaw; Samantha L Riches; Varinder K Aggarwal
Journal:  Chem Rev       Date:  2007-12       Impact factor: 60.622

4.  N-tert-butanesulfinyl imines: versatile intermediates for the asymmetric synthesis of amines.

Authors:  Jonathan A Ellman; Timothy D Owens; Tony P Tang
Journal:  Acc Chem Res       Date:  2002-11       Impact factor: 22.384

5.  New approaches to the industrial synthesis of HIV protease inhibitors.

Authors:  Yutaka Honda; Satoshi Katayama; Mitsuhiko Kojima; Takayuki Suzuki; Naomi Kishibata; Kunisuke Izawa
Journal:  Org Biomol Chem       Date:  2004-06-23       Impact factor: 3.876

6.  Recycling the tert-butanesulfinyl group in the synthesis of amines using tert-butanesulfinamide.

Authors:  Masakazu Wakayama; Jonathan A Ellman
Journal:  J Org Chem       Date:  2009-04-03       Impact factor: 4.354

7.  Highly stereoselective methylene transfers onto butanediacetal-protected chiral non-racemic sulfinyl imines using S-ylide technology.

Authors:  David C Forbes; Sampada V Bettigeri; Susanna C Pischek
Journal:  Chem Commun (Camb)       Date:  2009-03-09       Impact factor: 6.222

  7 in total
  2 in total

1.  Relative Stabilities of Transition States Determine Diastereocontrol in Sulfur Ylide Additions onto Chiral N-Sulfinyl Imines.

Authors:  E Alan Salter; David C Forbes; Andrzej Wierzbicki
Journal:  Int J Quantum Chem       Date:  2012-01-01       Impact factor: 2.444

2.  (Z)-N-[1-(Aziridin-1-yl)-2,2,2-tri-fluoro-ethyl-idene]-4-bromo-aniline.

Authors:  Alexander S Bunev; Maksim A Vasiliev; Gennady I Ostapenko; Alexander S Peregudov; Victor N Khrustalev
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-04-12
  2 in total

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