Literature DB >> 21589600

4-Methyl-1-(3-pyridyl-methyl-idene)thio-semicarbazide.

Rongchun Li1.   

Abstract

All the non-H atoms of the title compound, C(8)H(10)N(4)S, lie on a crystallographic mirror plane and an intra-molecular N-H⋯N hydrogen bond helps to stabilize the mol-ecular conformation. In the crystal, mol-ecules are linked through inter-molecular N-H⋯N hydrogen bonds, forming zigzag C(7) chains along the a axis.

Entities:  

Year:  2010        PMID: 21589600      PMCID: PMC3011564          DOI: 10.1107/S1600536810048853

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to Schiff bases derived from thio­semicarbazone and its derivatives, see: Casas et al. (2001 ▶); Beraldo et al. (2001 ▶); Jouad et al. (2002 ▶); Swearingen et al. (2002 ▶). For bond-length data, see: Allen et al. (1987 ▶). For similar structures, see: Selvanayagam et al. (2002 ▶); Karakurt et al. (2003 ▶); Bernhardt et al. (2003 ▶); Sampath et al. (2003 ▶).

Experimental

Crystal data

C8H10N4S M = 194.26 Monoclinic, a = 7.276 (3) Å b = 6.581 (2) Å c = 10.297 (3) Å β = 92.997 (2)° V = 492.4 (3) Å3 Z = 2 Mo Kα radiation μ = 0.29 mm−1 T = 298 K 0.17 × 0.15 × 0.15 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2004 ▶) T min = 0.953, T max = 0.958 3208 measured reflections 1106 independent reflections 640 reflections with I > 2σ(I) R int = 0.041

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.118 S = 1.02 1106 reflections 84 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.14 e Å−3 Δρmin = −0.20 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810048853/hb5755sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810048853/hb5755Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C8H10N4SF(000) = 204
Mr = 194.26Dx = 1.310 Mg m3
Monoclinic, P21/mMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybCell parameters from 669 reflections
a = 7.276 (3) Åθ = 2.7–24.5°
b = 6.581 (2) ŵ = 0.29 mm1
c = 10.297 (3) ÅT = 298 K
β = 92.997 (2)°Block, colourless
V = 492.4 (3) Å30.17 × 0.15 × 0.15 mm
Z = 2
Bruker APEXII CCD diffractometer1106 independent reflections
Radiation source: fine-focus sealed tube640 reflections with I > 2σ(I)
graphiteRint = 0.041
ω scansθmax = 26.5°, θmin = 2.8°
Absorption correction: multi-scan (SADABS; Sheldrick, 2004)h = −9→9
Tmin = 0.953, Tmax = 0.958k = −8→8
3208 measured reflectionsl = −12→10
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.043Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.118H atoms treated by a mixture of independent and constrained refinement
S = 1.02w = 1/[σ2(Fo2) + (0.0547P)2] where P = (Fo2 + 2Fc2)/3
1106 reflections(Δ/σ)max < 0.001
84 parametersΔρmax = 0.14 e Å3
2 restraintsΔρmin = −0.19 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
S10.68926 (12)0.25000.29184 (9)0.0835 (4)
N1−0.2929 (3)0.2500−0.1051 (2)0.0558 (7)
N20.2508 (3)0.25000.0542 (2)0.0507 (6)
N30.4324 (3)0.25000.1009 (2)0.0566 (7)
N40.3217 (4)0.25000.3028 (3)0.0699 (8)
C10.0350 (3)0.2500−0.1287 (3)0.0496 (7)
C2−0.1201 (3)0.2500−0.0547 (3)0.0510 (8)
H2−0.10200.25000.03540.061*
C3−0.3159 (4)0.2500−0.2351 (3)0.0616 (9)
H3A−0.43530.2500−0.27200.074*
C4−0.1733 (4)0.2500−0.3164 (3)0.0697 (10)
H4A−0.19540.2500−0.40610.084*
C50.0049 (4)0.2500−0.2620 (3)0.0673 (10)
H50.10410.2500−0.31540.081*
C60.2213 (4)0.2500−0.0687 (3)0.0581 (8)
H60.32090.2500−0.12170.070*
C70.4698 (4)0.25000.2318 (3)0.0554 (8)
C80.3272 (5)0.25000.4451 (3)0.0994 (13)
H8A0.33100.11250.47620.149*0.50
H8B0.21930.31620.47430.149*0.50
H8C0.43490.32130.47810.149*0.50
H30.519 (3)0.25000.042 (2)0.080*
H40.212 (2)0.25000.259 (3)0.080*
U11U22U33U12U13U23
S10.0681 (6)0.1189 (9)0.0617 (6)0.000−0.0150 (4)0.000
N10.0392 (13)0.0640 (17)0.0642 (17)0.0000.0028 (12)0.000
N20.0365 (12)0.0615 (16)0.0542 (15)0.0000.0019 (11)0.000
N30.0416 (13)0.0775 (18)0.0508 (16)0.0000.0024 (11)0.000
N40.0738 (18)0.085 (2)0.0518 (16)0.0000.0136 (14)0.000
C10.0369 (14)0.0618 (19)0.0503 (17)0.0000.0058 (12)0.000
C20.0425 (15)0.0593 (19)0.0512 (18)0.0000.0011 (13)0.000
C30.0450 (16)0.074 (2)0.064 (2)0.000−0.0062 (15)0.000
C40.0587 (19)0.102 (3)0.0478 (19)0.000−0.0054 (16)0.000
C50.0505 (18)0.097 (3)0.055 (2)0.0000.0091 (15)0.000
C60.0389 (15)0.078 (2)0.0579 (19)0.0000.0108 (13)0.000
C70.0624 (19)0.0541 (19)0.0499 (18)0.0000.0033 (15)0.000
C80.126 (3)0.121 (4)0.053 (2)0.0000.023 (2)0.000
S1—C71.682 (3)C1—C61.460 (4)
N1—C21.335 (3)C2—H20.9300
N1—C31.340 (3)C3—C41.367 (4)
N2—C61.273 (4)C3—H3A0.9300
N2—N31.382 (3)C4—C51.385 (4)
N3—C71.361 (4)C4—H4A0.9300
N3—H30.899 (10)C5—H50.9300
N4—C71.334 (4)C6—H60.9300
N4—C81.463 (4)C8—H8A0.9600
N4—H40.898 (10)C8—H8B0.9600
C1—C51.379 (4)C8—H8C0.9600
C1—C21.394 (4)
C2—N1—C3117.0 (2)C3—C4—H4A120.8
C6—N2—N3117.1 (2)C5—C4—H4A120.8
C7—N3—N2118.9 (2)C1—C5—C4119.9 (3)
C7—N3—H3124 (2)C1—C5—H5120.0
N2—N3—H3117 (2)C4—C5—H5120.0
C7—N4—C8124.7 (3)N2—C6—C1121.7 (3)
C7—N4—H4117 (2)N2—C6—H6119.2
C8—N4—H4119 (2)C1—C6—H6119.2
C5—C1—C2117.0 (2)N4—C7—N3114.7 (3)
C5—C1—C6121.1 (3)N4—C7—S1125.2 (2)
C2—C1—C6121.9 (3)N3—C7—S1120.1 (2)
N1—C2—C1124.1 (2)N4—C8—H8A109.5
N1—C2—H2118.0N4—C8—H8B109.5
C1—C2—H2118.0H8A—C8—H8B109.5
N1—C3—C4123.6 (3)N4—C8—H8C109.5
N1—C3—H3A118.2H8A—C8—H8C109.5
C4—C3—H3A118.2H8B—C8—H8C109.5
C3—C4—C5118.5 (3)
D—H···AD—HH···AD···AD—H···A
N4—H4···N20.90 (2)2.14 (3)2.585 (4)109 (2)
N3—H3···N1i0.90 (1)2.09 (1)2.989 (3)176 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N4—H4⋯N20.90 (2)2.14 (3)2.585 (4)109 (2)
N3—H3⋯N1i0.90 (1)2.09 (1)2.989 (3)176 (3)

Symmetry code: (i) .

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