Literature DB >> 21589588

5-[1-(Carb-oxy-meth-yl)pyridinium-4-yl]-1,2,3,4-tetra-zol-1-ide.

Li-Ping Feng1, Liang Zhao.   

Abstract

In the title compound, C(8)H(7)N(5)O(2), the tetra-zole and pyridine rings are twisted from each other by a dihedral angle of 17.97 (1)°. The zwitterionic mol-ecules are connected by O-H⋯N hydrogen bonds into a chain parallel to [20]. Further C-H⋯O and C-H⋯N hydrogen bonds link the chains, building up a three-dimensional network.

Entities:  

Year:  2010        PMID: 21589588      PMCID: PMC3011701          DOI: 10.1107/S1600536810048403

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the chemisty of tetra­zoles and for related structures, see: Fu et al. (2009 ▶); Wen (2008 ▶); Dai & Fu (2008 ▶).

Experimental

Crystal data

C8H7N5O2 M = 205.19 Monoclinic, a = 8.8094 (18) Å b = 9.3732 (19) Å c = 11.189 (2) Å β = 101.80 (3)° V = 904.4 (3) Å3 Z = 4 Mo Kα radiation μ = 0.12 mm−1 T = 298 K 0.10 × 0.03 × 0.03 mm

Data collection

Rigaku Mercury2 diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2005 ▶) T min = 0.910, T max = 1.000 4629 measured reflections 1043 independent reflections 971 reflections with I > 2σ(I) R int = 0.021

Refinement

R[F 2 > 2σ(F 2)] = 0.031 wR(F 2) = 0.082 S = 1.07 1043 reflections 137 parameters 2 restraints H-atom parameters constrained Δρmax = 0.14 e Å−3 Δρmin = −0.20 e Å−3 Data collection: CrystalClear (Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XP in SHELXTL (Sheldrick, 2008 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810048403/dn2625sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810048403/dn2625Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C8H7N5O2F(000) = 424
Mr = 205.19Dx = 1.507 Mg m3
Monoclinic, CcMo Kα radiation, λ = 0.71073 Å
Hall symbol: C -2ycCell parameters from 2059 reflections
a = 8.8094 (18) Åθ = 3.2–27.5°
b = 9.3732 (19) ŵ = 0.12 mm1
c = 11.189 (2) ÅT = 298 K
β = 101.80 (3)°Block, colourless
V = 904.4 (3) Å30.10 × 0.03 × 0.03 mm
Z = 4
Rigaku Mercury2 diffractometer1043 independent reflections
Radiation source: fine-focus sealed tube971 reflections with I > 2σ(I)
graphiteRint = 0.021
Detector resolution: 13.6612 pixels mm-1θmax = 27.5°, θmin = 3.2°
CCD profile fitting scansh = −11→11
Absorption correction: multi-scan (CrystalClear; Rigaku, 2005)k = −12→12
Tmin = 0.910, Tmax = 1.000l = −14→14
4629 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.031Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.082H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.0478P)2 + 0.1896P] where P = (Fo2 + 2Fc2)/3
1043 reflections(Δ/σ)max < 0.001
137 parametersΔρmax = 0.14 e Å3
2 restraintsΔρmin = −0.20 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O11.1510 (2)0.22028 (18)0.28067 (17)0.0424 (4)
H1A1.19880.15810.25230.064*
O20.9872 (2)0.04264 (18)0.30239 (18)0.0473 (4)
N10.83175 (19)0.21616 (19)0.43834 (16)0.0302 (4)
N20.3137 (2)0.1524 (3)0.5601 (2)0.0498 (6)
N30.2244 (2)0.0761 (3)0.6185 (2)0.0488 (6)
N40.2990 (2)−0.0370 (2)0.66513 (19)0.0411 (5)
N50.4411 (2)−0.0394 (2)0.6403 (2)0.0414 (5)
C10.6906 (3)0.2695 (3)0.3907 (2)0.0374 (5)
H10.67950.33660.32830.045*
C20.5627 (3)0.2256 (3)0.4332 (2)0.0383 (5)
H20.46580.26450.40110.046*
C30.5786 (2)0.1231 (2)0.5242 (2)0.0306 (4)
C40.7249 (3)0.0675 (2)0.5702 (2)0.0371 (5)
H40.7380−0.00230.63040.045*
C50.8499 (3)0.1156 (2)0.5265 (2)0.0375 (5)
H50.94800.07880.55780.045*
C60.4446 (2)0.0779 (2)0.57437 (19)0.0320 (5)
C70.9702 (2)0.2699 (2)0.3979 (2)0.0339 (5)
H7A1.04940.29340.46900.041*
H7B0.94350.35670.35110.041*
C81.0352 (2)0.1622 (2)0.32033 (19)0.0308 (4)
U11U22U33U12U13U23
O10.0384 (8)0.0479 (9)0.0486 (9)0.0017 (7)0.0268 (8)0.0014 (8)
O20.0452 (10)0.0420 (9)0.0610 (11)−0.0036 (8)0.0258 (9)−0.0095 (8)
N10.0251 (9)0.0346 (9)0.0351 (9)0.0004 (7)0.0156 (7)0.0006 (7)
N20.0292 (9)0.0692 (14)0.0553 (13)0.0078 (10)0.0184 (9)0.0190 (11)
N30.0272 (9)0.0736 (16)0.0495 (11)−0.0015 (10)0.0168 (8)0.0095 (11)
N40.0321 (9)0.0537 (12)0.0429 (10)−0.0090 (9)0.0202 (8)−0.0053 (9)
N50.0333 (10)0.0468 (11)0.0504 (11)−0.0008 (8)0.0232 (9)0.0039 (9)
C10.0328 (11)0.0421 (12)0.0406 (11)0.0048 (9)0.0152 (9)0.0104 (10)
C20.0256 (10)0.0484 (13)0.0431 (13)0.0047 (9)0.0121 (9)0.0081 (10)
C30.0247 (9)0.0385 (11)0.0312 (10)−0.0004 (8)0.0116 (8)−0.0031 (8)
C40.0295 (10)0.0417 (11)0.0434 (12)0.0028 (9)0.0150 (9)0.0125 (11)
C50.0246 (9)0.0462 (12)0.0438 (12)0.0072 (9)0.0119 (9)0.0103 (10)
C60.0276 (10)0.0389 (11)0.0320 (10)−0.0029 (8)0.0117 (9)−0.0016 (8)
C70.0296 (11)0.0359 (11)0.0419 (12)−0.0011 (8)0.0205 (9)0.0005 (9)
C80.0284 (9)0.0334 (10)0.0331 (10)0.0035 (8)0.0120 (8)0.0014 (9)
O1—C81.311 (3)C1—H10.9300
O1—H1A0.8200C2—C31.386 (3)
O2—C81.200 (3)C2—H20.9300
N1—C11.345 (3)C3—C41.388 (3)
N1—C51.350 (3)C3—C61.469 (3)
N1—C71.474 (3)C4—C51.370 (3)
N2—N31.329 (3)C4—H40.9300
N2—C61.330 (3)C5—H50.9300
N3—N41.299 (3)C7—C81.517 (3)
N4—N51.337 (3)C7—H7A0.9700
N5—C61.328 (3)C7—H7B0.9700
C1—C21.373 (3)
C8—O1—H1A109.5C5—C4—H4120.1
C1—N1—C5120.71 (18)C3—C4—H4120.1
C1—N1—C7120.49 (18)N1—C5—C4120.5 (2)
C5—N1—C7118.77 (18)N1—C5—H5119.8
N3—N2—C6104.1 (2)C4—C5—H5119.8
N4—N3—N2109.6 (2)N5—C6—N2112.5 (2)
N3—N4—N5110.4 (2)N5—C6—C3124.28 (19)
C6—N5—N4103.3 (2)N2—C6—C3123.2 (2)
N1—C1—C2120.6 (2)N1—C7—C8112.40 (17)
N1—C1—H1119.7N1—C7—H7A109.1
C2—C1—H1119.7C8—C7—H7A109.1
C1—C2—C3119.7 (2)N1—C7—H7B109.1
C1—C2—H2120.2C8—C7—H7B109.1
C3—C2—H2120.2H7A—C7—H7B107.9
C2—C3—C4118.6 (2)O2—C8—O1127.1 (2)
C2—C3—C6120.81 (19)O2—C8—C7123.7 (2)
C4—C3—C6120.52 (19)O1—C8—C7109.16 (17)
C5—C4—C3119.8 (2)
C6—N2—N3—N40.3 (3)N4—N5—C6—N21.3 (3)
N2—N3—N4—N50.5 (3)N4—N5—C6—C3−179.9 (2)
N3—N4—N5—C6−1.0 (3)N3—N2—C6—N5−1.0 (3)
C5—N1—C1—C21.9 (4)N3—N2—C6—C3−179.9 (2)
C7—N1—C1—C2−176.2 (2)C2—C3—C6—N5164.3 (2)
N1—C1—C2—C3−1.5 (4)C4—C3—C6—N5−17.9 (3)
C1—C2—C3—C40.1 (3)C2—C3—C6—N2−17.0 (3)
C1—C2—C3—C6177.9 (2)C4—C3—C6—N2160.8 (2)
C2—C3—C4—C50.9 (4)C1—N1—C7—C8−108.5 (2)
C6—C3—C4—C5−176.9 (2)C5—N1—C7—C873.4 (3)
C1—N1—C5—C4−0.9 (4)N1—C7—C8—O2−5.8 (3)
C7—N1—C5—C4177.2 (2)N1—C7—C8—O1175.68 (18)
C3—C4—C5—N1−0.5 (4)
D—H···AD—HH···AD···AD—H···A
O1—H1A···N4i0.821.842.648 (3)170
C1—H1···O2ii0.932.553.165 (3)124
C1—H1···N3iii0.932.593.440 (3)152
C5—H5···N3iv0.932.393.270 (3)158
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1A⋯N4i0.821.842.648 (3)170
C1—H1⋯O2ii0.932.553.165 (3)124
C1—H1⋯N3iii0.932.593.440 (3)152
C5—H5⋯N3iv0.932.393.270 (3)158

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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