Literature DB >> 21589439

3-Diethyl-amino-6-[(Z)-(4-hy-droxy-anilino)methyl-idene]cyclo-hexa-2,4-dienone.

Erkan Soydemir, Orhan Büyükgüngör, Ciğdem Albayrak.   

Abstract

In the mol-ecule of the title compound, C(17)H(20)N(2)O(2), the aromatic rings are oriented at a dihedral angle of 6.23 (22)°. Intra-molecular N-H⋯O hydrogen bonding involving the amine H atom and the carbonyl O atom affects the conformation of the mol-ecule. One of the ethyl arms is disordered over two conformations, with occupancies of 0.59 (2) and 0.41 (2). The crystal packing is stabilized by inter-molecular C-H⋯O and O-H⋯O hydrogen bonds, and weak C-H⋯π inter-actions.

Entities:  

Year:  2010        PMID: 21589439      PMCID: PMC3011427          DOI: 10.1107/S1600536810045939

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to Schiff bases, see: Odabaşoğlu et al. (2004 ▶); Hadjoudis et al. (1987 ▶); Hodnett & Dunn (1970 ▶); Misra et al. (1981 ▶); Agarwal et al. (1983 ▶); Varma et al. (1986 ▶); Singh & Dash (1988 ▶); Pandey et al. (1999 ▶); El-Masry et al. (2000 ▶); Samadhiya & Halve (2001 ▶); Xu et al. (1994 ▶); Calligaris et al. (1972 ▶); Cohen et al. (1964 ▶); Moustakali-Mavridis et al. (1978 ▶). For related strucures: Ersanlı et al. (2003 ▶); Şahin et al. (2005 ▶).

Experimental

Crystal data

C17H20N2O2 M = 284.35 Monoclinic, a = 8.2648 (4) Å b = 11.8968 (4) Å c = 16.6149 (7) Å β = 112.400 (3)° V = 1510.39 (11) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 296 K 0.54 × 0.44 × 0.26 mm

Data collection

Stoe IPDS 2 diffractometer Absorption correction: integration (X-RED32; Stoe & Cie, 2002 ▶) T min = 0.957, T max = 0.979 18967 measured reflections 3143 independent reflections 2416 reflections with I > 2σ(I) R int = 0.067

Refinement

R[F 2 > 2σ(F 2)] = 0.065 wR(F 2) = 0.189 S = 1.06 3143 reflections 208 parameters 13 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.37 e Å−3 Δρmin = −0.27 e Å−3 Data collection: X-AREA (Stoe & Cie, 2002 ▶); cell refinement: X-AREA; data reduction: X-RED32 (Stoe & Cie, 2002 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810045939/si2307sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810045939/si2307Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H20N2O2F(000) = 608
Mr = 284.35Dx = 1.250 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 18967 reflections
a = 8.2648 (4) Åθ = 1.7–28.0°
b = 11.8968 (4) ŵ = 0.08 mm1
c = 16.6149 (7) ÅT = 296 K
β = 112.400 (3)°Prism, brown
V = 1510.39 (11) Å30.54 × 0.44 × 0.26 mm
Z = 4
Stoe IPDS 2 diffractometer3143 independent reflections
Radiation source: fine-focus sealed tube2416 reflections with I > 2σ(I)
graphiteRint = 0.067
Detector resolution: 6.67 pixels mm-1θmax = 26.5°, θmin = 2.2°
rotation method scansh = −10→10
Absorption correction: integration (X-RED32; Stoe & Cie, 2002)k = −14→14
Tmin = 0.957, Tmax = 0.979l = −20→20
18967 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.065Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.189H atoms treated by a mixture of independent and constrained refinement
S = 1.06w = 1/[σ2(Fo2) + (0.0969P)2 + 0.3716P] where P = (Fo2 + 2Fc2)/3
3143 reflections(Δ/σ)max < 0.001
208 parametersΔρmax = 0.37 e Å3
13 restraintsΔρmin = −0.27 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
C10.8028 (2)0.31443 (16)0.65717 (13)0.0483 (5)
C20.9660 (3)0.35845 (19)0.70654 (14)0.0549 (5)
H31.01260.41630.68440.066*
C31.0587 (3)0.31624 (19)0.78840 (14)0.0581 (5)
H21.16800.34630.82120.070*
C40.9927 (3)0.22989 (19)0.82301 (13)0.0550 (5)
C50.8278 (3)0.1876 (2)0.77383 (16)0.0627 (6)
H60.78000.13090.79630.075*
C60.7352 (3)0.22939 (19)0.69203 (15)0.0593 (6)
H50.62530.20010.65950.071*
C70.7361 (2)0.42738 (17)0.52483 (13)0.0501 (5)
H70.83860.46890.54950.060*
C80.6253 (2)0.44989 (16)0.43902 (12)0.0470 (5)
C90.6675 (3)0.53469 (18)0.39085 (14)0.0536 (5)
H90.76880.57660.41800.064*
C100.5666 (3)0.55735 (19)0.30686 (14)0.0567 (5)
H100.60000.61340.27740.068*
C110.4090 (3)0.49573 (19)0.26311 (13)0.0556 (5)
C120.3648 (3)0.41193 (19)0.30976 (13)0.0552 (5)
H120.26380.37010.28160.066*
C130.4654 (2)0.38791 (17)0.39687 (12)0.0473 (5)
C140.1382 (4)0.4570 (2)0.13497 (16)0.0802 (8)
H15A0.06000.50230.08750.096*
H15B0.08190.44470.17590.096*
C150.3476 (4)0.6042 (3)0.12686 (17)0.0855 (8)
H14A0.40630.66710.16340.103*
H14B0.24160.63190.08150.103*
C16A0.4682 (17)0.5521 (6)0.0854 (7)0.096 (3)0.59 (2)
H16A0.49600.60780.05080.144*0.59 (2)
H16B0.40970.49000.04910.144*0.59 (2)
H16C0.57410.52620.13040.144*0.59 (2)
C16B0.388 (3)0.5630 (9)0.0567 (10)0.097 (4)0.41 (2)
H16D0.41410.62490.02670.145*0.41 (2)
H16E0.28880.52240.01710.145*0.41 (2)
H16F0.48680.51370.07850.145*0.41 (2)
C170.1651 (5)0.3472 (3)0.1001 (2)0.1033 (11)
H17A0.05430.31020.07250.155*
H17B0.24060.30130.14680.155*
H17C0.21770.35880.05830.155*
N10.7013 (2)0.35026 (14)0.57193 (11)0.0500 (4)
H1B0.597 (3)0.316 (2)0.5437 (17)0.066 (7)*
N20.3028 (3)0.51988 (19)0.17918 (12)0.0712 (6)
O11.0820 (2)0.18478 (17)0.90278 (11)0.0723 (5)
H1A1.193 (5)0.197 (3)0.919 (3)0.131 (14)*
O20.41712 (18)0.31201 (13)0.43958 (9)0.0573 (4)
U11U22U33U12U13U23
C10.0409 (9)0.0490 (11)0.0465 (10)0.0055 (8)0.0073 (8)−0.0005 (8)
C20.0445 (10)0.0592 (12)0.0530 (12)−0.0014 (9)0.0097 (9)0.0059 (10)
C30.0429 (10)0.0648 (13)0.0548 (12)0.0007 (9)0.0053 (9)−0.0002 (10)
C40.0488 (10)0.0650 (13)0.0471 (11)0.0128 (9)0.0135 (9)0.0064 (9)
C50.0546 (11)0.0642 (14)0.0655 (14)0.0015 (10)0.0185 (11)0.0146 (11)
C60.0444 (10)0.0603 (13)0.0619 (13)−0.0036 (9)0.0076 (9)0.0058 (10)
C70.0429 (9)0.0485 (10)0.0525 (11)0.0005 (8)0.0109 (8)−0.0046 (9)
C80.0449 (9)0.0468 (10)0.0456 (10)0.0028 (8)0.0129 (8)−0.0024 (8)
C90.0497 (10)0.0532 (11)0.0560 (12)−0.0039 (9)0.0178 (9)−0.0026 (9)
C100.0634 (12)0.0543 (12)0.0568 (12)−0.0037 (10)0.0279 (10)0.0028 (10)
C110.0632 (12)0.0575 (12)0.0430 (10)0.0009 (10)0.0167 (9)0.0002 (9)
C120.0554 (11)0.0583 (12)0.0428 (10)−0.0078 (9)0.0086 (9)−0.0013 (9)
C130.0471 (10)0.0473 (10)0.0433 (10)0.0010 (8)0.0125 (8)−0.0015 (8)
C140.0868 (16)0.0904 (19)0.0479 (13)−0.0054 (12)0.0081 (12)0.0082 (12)
C150.119 (2)0.0810 (18)0.0530 (14)−0.0084 (16)0.0290 (15)0.0098 (13)
C16A0.097 (3)0.096 (3)0.096 (3)−0.0016 (10)0.0374 (14)0.0005 (10)
C16B0.097 (4)0.097 (4)0.096 (4)−0.0010 (10)0.0381 (18)0.0011 (10)
C170.138 (3)0.095 (2)0.0714 (19)−0.017 (2)0.0339 (19)−0.0090 (17)
N10.0400 (8)0.0524 (10)0.0467 (9)−0.0004 (7)0.0044 (7)−0.0006 (7)
N20.0859 (13)0.0756 (13)0.0445 (10)−0.0067 (10)0.0161 (9)0.0084 (9)
O10.0591 (10)0.0981 (14)0.0537 (9)0.0155 (9)0.0147 (8)0.0213 (9)
O20.0523 (8)0.0624 (9)0.0452 (8)−0.0123 (6)0.0050 (6)0.0069 (7)
C1—C61.385 (3)C12—C131.397 (3)
C1—C21.387 (3)C12—H120.9300
C1—N11.409 (3)C13—O21.301 (2)
C2—C31.377 (3)C14—N21.479 (3)
C2—H30.9300C14—C171.481 (4)
C3—C41.387 (3)C14—H15A0.9700
C3—H20.9300C14—H15B0.9700
C4—O11.358 (3)C15—C16B1.415 (9)
C4—C51.389 (3)C15—N21.465 (3)
C5—C61.374 (3)C15—C16A1.541 (8)
C5—H60.9300C15—H14A0.9700
C6—H50.9300C15—H14B0.9700
C7—N11.307 (3)C16A—H16A0.9600
C7—C81.396 (3)C16A—H16B0.9600
C7—H70.9300C16A—H16C0.9600
C8—C91.412 (3)C16B—H16D0.9600
C8—C131.441 (3)C16B—H16E0.9600
C9—C101.352 (3)C16B—H16F0.9600
C9—H90.9300C17—H17A0.9600
C10—C111.429 (3)C17—H17B0.9600
C10—H100.9300C17—H17C0.9600
C11—N21.366 (3)N1—H1B0.90 (3)
C11—C121.394 (3)O1—H1A0.87 (4)
C6—C1—C2119.00 (19)N2—C14—H15A108.9
C6—C1—N1117.45 (17)C17—C14—H15A108.9
C2—C1—N1123.54 (19)N2—C14—H15B108.9
C3—C2—C1119.8 (2)C17—C14—H15B108.9
C3—C2—H3120.1H15A—C14—H15B107.8
C1—C2—H3120.1C16B—C15—N2116.3 (5)
C2—C3—C4121.39 (19)N2—C15—C16A110.1 (4)
C2—C3—H2119.3C16B—C15—H14A124.5
C4—C3—H2119.3N2—C15—H14A109.6
O1—C4—C3123.0 (2)C16A—C15—H14A109.6
O1—C4—C5118.5 (2)C16B—C15—H14B84.4
C3—C4—C5118.50 (19)N2—C15—H14B109.6
C6—C5—C4120.2 (2)C16A—C15—H14B109.6
C6—C5—H6119.9H14A—C15—H14B108.2
C4—C5—H6119.9C15—C16A—H16A109.5
C5—C6—C1121.10 (19)C15—C16A—H16B109.5
C5—C6—H5119.4H16A—C16A—H16B109.5
C1—C6—H5119.4C15—C16A—H16C109.5
N1—C7—C8122.57 (18)H16A—C16A—H16C109.5
N1—C7—H7118.7H16B—C16A—H16C109.5
C8—C7—H7118.7C15—C16B—H16D109.5
C7—C8—C9120.58 (18)C15—C16B—H16E109.5
C7—C8—C13121.43 (18)H16D—C16B—H16E109.5
C9—C8—C13118.00 (17)C15—C16B—H16F109.5
C10—C9—C8122.60 (19)H16D—C16B—H16F109.5
C10—C9—H9118.7H16E—C16B—H16F109.5
C8—C9—H9118.7C14—C17—H17A109.5
C9—C10—C11120.5 (2)C14—C17—H17B109.5
C9—C10—H10119.8H17A—C17—H17B109.5
C11—C10—H10119.8C14—C17—H17C109.5
N2—C11—C12121.0 (2)H17A—C17—H17C109.5
N2—C11—C10121.2 (2)H17B—C17—H17C109.5
C12—C11—C10117.73 (19)C7—N1—C1129.19 (18)
C11—C12—C13122.95 (19)C7—N1—H1B112.7 (16)
C11—C12—H12118.5C1—N1—H1B118.1 (16)
C13—C12—H12118.5C11—N2—C15122.7 (2)
O2—C13—C12121.47 (18)C11—N2—C14120.8 (2)
O2—C13—C8120.34 (17)C15—N2—C14116.4 (2)
C12—C13—C8118.20 (19)C4—O1—H1A111 (3)
N2—C14—C17113.2 (3)
C6—C1—C2—C30.9 (3)C11—C12—C13—O2177.4 (2)
N1—C1—C2—C3−178.06 (19)C11—C12—C13—C8−2.5 (3)
C1—C2—C3—C40.1 (3)C7—C8—C13—O22.8 (3)
C2—C3—C4—O1178.7 (2)C9—C8—C13—O2−177.25 (18)
C2—C3—C4—C5−1.3 (3)C7—C8—C13—C12−177.39 (19)
O1—C4—C5—C6−178.5 (2)C9—C8—C13—C122.6 (3)
C3—C4—C5—C61.5 (3)C8—C7—N1—C1176.75 (18)
C4—C5—C6—C1−0.5 (4)C6—C1—N1—C7−179.4 (2)
C2—C1—C6—C5−0.7 (3)C2—C1—N1—C7−0.5 (3)
N1—C1—C6—C5178.3 (2)C12—C11—N2—C15−177.6 (2)
N1—C7—C8—C9179.48 (18)C10—C11—N2—C154.1 (4)
N1—C7—C8—C13−0.5 (3)C12—C11—N2—C14−0.5 (4)
C7—C8—C9—C10178.19 (19)C10—C11—N2—C14−178.9 (2)
C13—C8—C9—C10−1.8 (3)C16B—C15—N2—C11110.8 (10)
C8—C9—C10—C110.7 (3)C16A—C15—N2—C1183.7 (6)
C9—C10—C11—N2177.9 (2)C16B—C15—N2—C14−66.3 (10)
C9—C10—C11—C12−0.4 (3)C16A—C15—N2—C14−93.5 (6)
N2—C11—C12—C13−177.0 (2)C17—C14—N2—C11−81.1 (3)
C10—C11—C12—C131.4 (3)C17—C14—N2—C1596.1 (3)
Cg1 is the centroid of the C8–C13 ring.
D—H···AD—HH···AD···AD—H···A
N1—H1B···O20.90 (3)1.80 (3)2.574 (2)142 (2)
O1—H1A···O2i0.87 (4)1.75 (4)2.599 (2)165 (4)
C16A—H16A···O2ii0.962.523.306 (7)139
C5—H6···Cg1iii0.932.933.799 (3)156
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C8–C13 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1B⋯O20.90 (3)1.80 (3)2.574 (2)142 (2)
O1—H1A⋯O2i0.87 (4)1.75 (4)2.599 (2)165 (4)
C16A—H16A⋯O2ii0.962.523.306 (7)139
C5—H6⋯Cg1iii0.932.933.799 (3)156

Symmetry codes: (i) ; (ii) ; (iii) .

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1.  Synthesis and antimicrobial activity of Schiff and Mannich bases of isatin and its derivatives with pyrimidine.

Authors:  S N Pandeya; D Sriram; G Nath; E De Clercq
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2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Structure-antitumor activity correlation of some Schiff bases.

Authors:  E M Hodnett; W J Dunn
Journal:  J Med Chem       Date:  1970-07       Impact factor: 7.446

4.  2-[(2-hydroxy-4-nitrophenyl)aminomethylene]cyclohexa-3,5-dien-1(2H)-one.

Authors:  Cem Cüneyt Ersanli; Cigdem Albayrak; Mustafa Odabaşoglu; Ahmet Erdönmez
Journal:  Acta Crystallogr C       Date:  2003-09-23       Impact factor: 1.172

  4 in total

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