| Literature DB >> 21589432 |
Mohammad Asad, Chuan-Wei Oo, Hasnah Osman, Jia Hao Goh, Hoong-Kun Fun.
Abstract
In the title coumarin derivative, C(13)H(12)O(4), the 2H-chromene ring system is essentially planar [maximum deviation = 0.047 (1) Å]. An intra-molecular hydrogen bond is observed between the hy-droxy and the ketonic O atoms. In the crystal, pairs of inter-molecular C-H⋯O hydrogen bonds link inversion-related mol-ecules into dimers. Additional inter-molecular C-H⋯O hydrogen bonds further inter-connect these dimers into two-dimensional arrays incorporating R(2) (2)(9) ring motifs.Entities:
Year: 2010 PMID: 21589432 PMCID: PMC3011552 DOI: 10.1107/S1600536810045010
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C13H12O4 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 5636 reflections |
| θ = 3.2–30.2° | |
| µ = 0.11 mm−1 | |
| β = 90.563 (1)° | Block, brown |
| 0.32 × 0.19 × 0.13 mm | |
| Bruker APEXII DUO CCD area-detector diffractometer | 3139 independent reflections |
| Radiation source: fine-focus sealed tube | 2539 reflections with |
| graphite | |
| φ and ω scans | θmax = 30.2°, θmin = 3.2° |
| Absorption correction: multi-scan ( | |
| 13172 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3139 reflections | (Δ/σ)max < 0.001 |
| 161 parameters | Δρmax = 0.64 e Å−3 |
| 0 restraints | Δρmin = −0.28 e Å−3 |
| Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1)K. |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| O1 | 0.2856 (2) | 0.47223 (7) | 0.06747 (4) | 0.0226 (2) | |
| O2 | 0.8349 (3) | 0.53534 (8) | 0.22188 (4) | 0.0257 (2) | |
| O3 | 0.8887 (3) | 0.33852 (8) | 0.23973 (5) | 0.0279 (2) | |
| O4 | 0.2728 (3) | 0.29458 (8) | 0.08591 (5) | 0.0282 (2) | |
| C1 | 0.3765 (3) | 0.38338 (10) | 0.10303 (6) | 0.0207 (2) | |
| C2 | 0.3684 (3) | 0.57902 (10) | 0.08348 (6) | 0.0194 (2) | |
| C3 | 0.2653 (3) | 0.66119 (10) | 0.04395 (6) | 0.0203 (2) | |
| H3A | 0.1509 | 0.6432 | 0.0083 | 0.024* | |
| C4 | 0.3335 (3) | 0.77060 (10) | 0.05780 (6) | 0.0193 (2) | |
| C5 | 0.5009 (3) | 0.79852 (10) | 0.11250 (6) | 0.0198 (2) | |
| C6 | 0.6079 (3) | 0.71492 (10) | 0.15068 (6) | 0.0203 (2) | |
| H6A | 0.7232 | 0.7324 | 0.1863 | 0.024* | |
| C7 | 0.5447 (3) | 0.60395 (10) | 0.13639 (6) | 0.0192 (2) | |
| C8 | 0.6577 (3) | 0.51334 (10) | 0.17322 (5) | 0.0193 (2) | |
| C9 | 0.5807 (3) | 0.40436 (10) | 0.15620 (5) | 0.0184 (2) | |
| C10 | 0.7117 (3) | 0.31530 (11) | 0.19379 (6) | 0.0218 (3) | |
| C11 | 0.6506 (4) | 0.19714 (11) | 0.18029 (7) | 0.0259 (3) | |
| H11B | 0.7690 | 0.1525 | 0.2094 | 0.039* | |
| H11C | 0.7309 | 0.1805 | 0.1405 | 0.039* | |
| H11D | 0.4124 | 0.1820 | 0.1822 | 0.039* | |
| C12 | 0.2309 (3) | 0.85786 (11) | 0.01304 (6) | 0.0249 (3) | |
| H12A | 0.0781 | 0.8268 | −0.0164 | 0.037* | |
| H12B | 0.4284 | 0.8854 | −0.0069 | 0.037* | |
| H12C | 0.1207 | 0.9171 | 0.0338 | 0.037* | |
| C13 | 0.5604 (4) | 0.91704 (11) | 0.12989 (7) | 0.0264 (3) | |
| H13A | 0.6985 | 0.9200 | 0.1658 | 0.040* | |
| H13B | 0.3471 | 0.9522 | 0.1373 | 0.040* | |
| H13C | 0.6735 | 0.9544 | 0.0976 | 0.040* | |
| H1O2 | 0.886 (4) | 0.4360 (15) | 0.2387 (8) | 0.029 (4)* |
| O1 | 0.0297 (5) | 0.0181 (4) | 0.0201 (4) | −0.0013 (3) | −0.0067 (3) | 0.0018 (3) |
| O2 | 0.0335 (5) | 0.0222 (5) | 0.0210 (5) | −0.0004 (4) | −0.0084 (4) | −0.0013 (4) |
| O3 | 0.0345 (5) | 0.0247 (5) | 0.0244 (5) | 0.0003 (4) | −0.0086 (4) | 0.0041 (4) |
| O4 | 0.0363 (5) | 0.0201 (5) | 0.0282 (5) | −0.0049 (4) | −0.0071 (4) | −0.0018 (4) |
| C1 | 0.0241 (5) | 0.0180 (5) | 0.0201 (6) | −0.0002 (4) | −0.0010 (4) | 0.0013 (4) |
| C2 | 0.0222 (5) | 0.0157 (5) | 0.0203 (6) | 0.0000 (4) | 0.0006 (4) | 0.0000 (4) |
| C3 | 0.0235 (5) | 0.0182 (5) | 0.0191 (6) | −0.0003 (4) | −0.0017 (4) | 0.0001 (4) |
| C4 | 0.0213 (5) | 0.0169 (5) | 0.0198 (6) | 0.0010 (4) | −0.0008 (4) | 0.0015 (4) |
| C5 | 0.0222 (5) | 0.0173 (5) | 0.0197 (6) | 0.0000 (4) | −0.0006 (4) | 0.0000 (4) |
| C6 | 0.0225 (5) | 0.0202 (5) | 0.0182 (6) | −0.0002 (4) | −0.0020 (4) | 0.0002 (4) |
| C7 | 0.0214 (5) | 0.0182 (5) | 0.0179 (6) | 0.0014 (4) | 0.0000 (4) | 0.0019 (4) |
| C8 | 0.0214 (5) | 0.0201 (5) | 0.0163 (5) | −0.0002 (4) | −0.0016 (4) | −0.0002 (4) |
| C9 | 0.0211 (5) | 0.0163 (5) | 0.0177 (5) | 0.0004 (4) | −0.0007 (4) | 0.0013 (4) |
| C10 | 0.0229 (5) | 0.0214 (6) | 0.0212 (6) | 0.0006 (4) | 0.0000 (4) | 0.0029 (4) |
| C11 | 0.0293 (6) | 0.0178 (6) | 0.0304 (7) | 0.0002 (4) | −0.0035 (5) | 0.0051 (5) |
| C12 | 0.0304 (6) | 0.0196 (6) | 0.0245 (6) | 0.0015 (5) | −0.0060 (5) | 0.0039 (5) |
| C13 | 0.0331 (6) | 0.0182 (6) | 0.0279 (7) | −0.0021 (5) | −0.0050 (5) | −0.0015 (5) |
| O1—C1 | 1.3797 (15) | C6—C7 | 1.4050 (17) |
| O1—C2 | 1.3819 (15) | C6—H6A | 0.9300 |
| O2—C8 | 1.3048 (15) | C7—C8 | 1.4366 (17) |
| O2—H1O2 | 1.277 (18) | C8—C9 | 1.4074 (17) |
| O3—C10 | 1.2590 (16) | C9—C10 | 1.4550 (17) |
| O3—H1O2 | 1.183 (18) | C10—C11 | 1.4840 (18) |
| O4—C1 | 1.2121 (15) | C11—H11B | 0.9600 |
| C1—C9 | 1.4415 (17) | C11—H11C | 0.9600 |
| C2—C3 | 1.3843 (17) | C11—H11D | 0.9600 |
| C2—C7 | 1.3884 (17) | C12—H12A | 0.9600 |
| C3—C4 | 1.3884 (17) | C12—H12B | 0.9600 |
| C3—H3A | 0.9300 | C12—H12C | 0.9600 |
| C4—C5 | 1.4133 (17) | C13—H13A | 0.9600 |
| C4—C12 | 1.5022 (17) | C13—H13B | 0.9600 |
| C5—C6 | 1.3831 (17) | C13—H13C | 0.9600 |
| C5—C13 | 1.5066 (17) | ||
| C1—O1—C2 | 121.83 (10) | C9—C8—C7 | 120.19 (11) |
| C8—O2—H1O2 | 97.4 (8) | C8—C9—C1 | 120.10 (11) |
| C10—O3—H1O2 | 101.7 (9) | C8—C9—C10 | 118.09 (11) |
| O4—C1—O1 | 115.58 (11) | C1—C9—C10 | 121.82 (11) |
| O4—C1—C9 | 126.59 (12) | O3—C10—C9 | 119.06 (12) |
| O1—C1—C9 | 117.83 (10) | O3—C10—C11 | 117.79 (11) |
| O1—C2—C3 | 116.52 (11) | C9—C10—C11 | 123.15 (11) |
| O1—C2—C7 | 122.39 (11) | C10—C11—H11B | 109.5 |
| C3—C2—C7 | 121.09 (11) | C10—C11—H11C | 109.5 |
| C2—C3—C4 | 119.64 (11) | H11B—C11—H11C | 109.5 |
| C2—C3—H3A | 120.2 | C10—C11—H11D | 109.5 |
| C4—C3—H3A | 120.2 | H11B—C11—H11D | 109.5 |
| C3—C4—C5 | 120.40 (11) | H11C—C11—H11D | 109.5 |
| C3—C4—C12 | 118.59 (11) | C4—C12—H12A | 109.5 |
| C5—C4—C12 | 121.00 (11) | C4—C12—H12B | 109.5 |
| C6—C5—C4 | 118.91 (11) | H12A—C12—H12B | 109.5 |
| C6—C5—C13 | 119.92 (11) | C4—C12—H12C | 109.5 |
| C4—C5—C13 | 121.17 (11) | H12A—C12—H12C | 109.5 |
| C5—C6—C7 | 120.90 (11) | H12B—C12—H12C | 109.5 |
| C5—C6—H6A | 119.6 | C5—C13—H13A | 109.5 |
| C7—C6—H6A | 119.6 | C5—C13—H13B | 109.5 |
| C2—C7—C6 | 118.99 (11) | H13A—C13—H13B | 109.5 |
| C2—C7—C8 | 117.43 (11) | C5—C13—H13C | 109.5 |
| C6—C7—C8 | 123.57 (11) | H13A—C13—H13C | 109.5 |
| O2—C8—C9 | 121.68 (11) | H13B—C13—H13C | 109.5 |
| O2—C8—C7 | 118.12 (11) | ||
| C2—O1—C1—O4 | 176.00 (11) | C5—C6—C7—C2 | −0.86 (19) |
| C2—O1—C1—C9 | −3.75 (17) | C5—C6—C7—C8 | 178.13 (11) |
| C1—O1—C2—C3 | 179.59 (11) | C2—C7—C8—O2 | 177.43 (11) |
| C1—O1—C2—C7 | −0.62 (18) | C6—C7—C8—O2 | −1.57 (19) |
| O1—C2—C3—C4 | 178.64 (11) | C2—C7—C8—C9 | −1.77 (18) |
| C7—C2—C3—C4 | −1.15 (19) | C6—C7—C8—C9 | 179.23 (11) |
| C2—C3—C4—C5 | −1.35 (18) | O2—C8—C9—C1 | 178.30 (11) |
| C2—C3—C4—C12 | 177.66 (11) | C7—C8—C9—C1 | −2.53 (18) |
| C3—C4—C5—C6 | 2.68 (18) | O2—C8—C9—C10 | −1.45 (18) |
| C12—C4—C5—C6 | −176.30 (11) | C7—C8—C9—C10 | 177.72 (11) |
| C3—C4—C5—C13 | −176.65 (12) | O4—C1—C9—C8 | −174.46 (13) |
| C12—C4—C5—C13 | 4.36 (19) | O1—C1—C9—C8 | 5.26 (17) |
| C4—C5—C6—C7 | −1.57 (19) | O4—C1—C9—C10 | 5.3 (2) |
| C13—C5—C6—C7 | 177.78 (11) | O1—C1—C9—C10 | −175.00 (11) |
| O1—C2—C7—C6 | −177.53 (11) | C8—C9—C10—O3 | −0.23 (18) |
| C3—C2—C7—C6 | 2.25 (19) | C1—C9—C10—O3 | −179.98 (12) |
| O1—C2—C7—C8 | 3.42 (18) | C8—C9—C10—C11 | −179.43 (12) |
| C3—C2—C7—C8 | −176.80 (11) | C1—C9—C10—C11 | 0.82 (19) |
| H··· | ||||
| O2—H1O2···O3 | 1.277 (18) | 1.183 (18) | 2.4299 (14) | 162.0 (16) |
| C6—H6A···O3i | 0.93 | 2.58 | 3.4603 (17) | 159 |
| C11—H11B···O2ii | 0.96 | 2.59 | 3.5458 (18) | 172 |
| C12—H12A···O4iii | 0.96 | 2.53 | 3.4751 (17) | 168 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O2—H1 | 1.277 (18) | 1.183 (18) | 2.4299 (14) | 162.0 (16) |
| C6—H6 | 0.93 | 2.58 | 3.4603 (17) | 159 |
| C11—H11 | 0.96 | 2.59 | 3.5458 (18) | 172 |
| C12—H12 | 0.96 | 2.53 | 3.4751 (17) | 168 |
Symmetry codes: (i) ; (ii) ; (iii) .