Literature DB >> 21589432

3-Acetyl-4-hy-droxy-6,7-dimethyl-2H-chromen-2-one.

Mohammad Asad, Chuan-Wei Oo, Hasnah Osman, Jia Hao Goh, Hoong-Kun Fun.   

Abstract

In the title coumarin derivative, C(13)H(12)O(4), the 2H-chromene ring system is essentially planar [maximum deviation = 0.047 (1) Å]. An intra-molecular hydrogen bond is observed between the hy-droxy and the ketonic O atoms. In the crystal, pairs of inter-molecular C-H⋯O hydrogen bonds link inversion-related mol-ecules into dimers. Additional inter-molecular C-H⋯O hydrogen bonds further inter-connect these dimers into two-dimensional arrays incorporating R(2) (2)(9) ring motifs.

Entities:  

Year:  2010        PMID: 21589432      PMCID: PMC3011552          DOI: 10.1107/S1600536810045010

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to and applications of coumarin derivatives, see: Eisenhauer & Link (1953 ▶); Franz et al. (1981 ▶); Frontiera et al. (2009 ▶); Maurer & Arlt (1998 ▶). Tamura et al. (1982 ▶); Wang et al. (2007 ▶). For graph-set theory of hydrogen-bond ring motifs, see: Bernstein et al. (1995 ▶). For bond-length data, see: Allen et al. (1987 ▶). For a related coumaric structure, see: Mechi et al. (2009 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C13H12O4 M = 232.23 Monoclinic, a = 3.9491 (4) Å b = 12.1359 (11) Å c = 22.101 (2) Å β = 90.563 (1)° V = 1059.16 (17) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 100 K 0.32 × 0.19 × 0.13 mm

Data collection

Bruker APEXII DUO CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.966, T max = 0.986 13172 measured reflections 3139 independent reflections 2539 reflections with I > 2σ(I) R int = 0.030

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.148 S = 1.05 3139 reflections 161 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.64 e Å−3 Δρmin = −0.28 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810045010/rz2512sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810045010/rz2512Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H12O4F(000) = 488
Mr = 232.23Dx = 1.456 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 5636 reflections
a = 3.9491 (4) Åθ = 3.2–30.2°
b = 12.1359 (11) ŵ = 0.11 mm1
c = 22.101 (2) ÅT = 100 K
β = 90.563 (1)°Block, brown
V = 1059.16 (17) Å30.32 × 0.19 × 0.13 mm
Z = 4
Bruker APEXII DUO CCD area-detector diffractometer3139 independent reflections
Radiation source: fine-focus sealed tube2539 reflections with I > 2σ(I)
graphiteRint = 0.030
φ and ω scansθmax = 30.2°, θmin = 3.2°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −5→5
Tmin = 0.966, Tmax = 0.986k = −17→17
13172 measured reflectionsl = −29→31
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.048Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.148H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.0758P)2 + 0.5033P] where P = (Fo2 + 2Fc2)/3
3139 reflections(Δ/σ)max < 0.001
161 parametersΔρmax = 0.64 e Å3
0 restraintsΔρmin = −0.28 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1)K.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.2856 (2)0.47223 (7)0.06747 (4)0.0226 (2)
O20.8349 (3)0.53534 (8)0.22188 (4)0.0257 (2)
O30.8887 (3)0.33852 (8)0.23973 (5)0.0279 (2)
O40.2728 (3)0.29458 (8)0.08591 (5)0.0282 (2)
C10.3765 (3)0.38338 (10)0.10303 (6)0.0207 (2)
C20.3684 (3)0.57902 (10)0.08348 (6)0.0194 (2)
C30.2653 (3)0.66119 (10)0.04395 (6)0.0203 (2)
H3A0.15090.64320.00830.024*
C40.3335 (3)0.77060 (10)0.05780 (6)0.0193 (2)
C50.5009 (3)0.79852 (10)0.11250 (6)0.0198 (2)
C60.6079 (3)0.71492 (10)0.15068 (6)0.0203 (2)
H6A0.72320.73240.18630.024*
C70.5447 (3)0.60395 (10)0.13639 (6)0.0192 (2)
C80.6577 (3)0.51334 (10)0.17322 (5)0.0193 (2)
C90.5807 (3)0.40436 (10)0.15620 (5)0.0184 (2)
C100.7117 (3)0.31530 (11)0.19379 (6)0.0218 (3)
C110.6506 (4)0.19714 (11)0.18029 (7)0.0259 (3)
H11B0.76900.15250.20940.039*
H11C0.73090.18050.14050.039*
H11D0.41240.18200.18220.039*
C120.2309 (3)0.85786 (11)0.01304 (6)0.0249 (3)
H12A0.07810.8268−0.01640.037*
H12B0.42840.8854−0.00690.037*
H12C0.12070.91710.03380.037*
C130.5604 (4)0.91704 (11)0.12989 (7)0.0264 (3)
H13A0.69850.92000.16580.040*
H13B0.34710.95220.13730.040*
H13C0.67350.95440.09760.040*
H1O20.886 (4)0.4360 (15)0.2387 (8)0.029 (4)*
U11U22U33U12U13U23
O10.0297 (5)0.0181 (4)0.0201 (4)−0.0013 (3)−0.0067 (3)0.0018 (3)
O20.0335 (5)0.0222 (5)0.0210 (5)−0.0004 (4)−0.0084 (4)−0.0013 (4)
O30.0345 (5)0.0247 (5)0.0244 (5)0.0003 (4)−0.0086 (4)0.0041 (4)
O40.0363 (5)0.0201 (5)0.0282 (5)−0.0049 (4)−0.0071 (4)−0.0018 (4)
C10.0241 (5)0.0180 (5)0.0201 (6)−0.0002 (4)−0.0010 (4)0.0013 (4)
C20.0222 (5)0.0157 (5)0.0203 (6)0.0000 (4)0.0006 (4)0.0000 (4)
C30.0235 (5)0.0182 (5)0.0191 (6)−0.0003 (4)−0.0017 (4)0.0001 (4)
C40.0213 (5)0.0169 (5)0.0198 (6)0.0010 (4)−0.0008 (4)0.0015 (4)
C50.0222 (5)0.0173 (5)0.0197 (6)0.0000 (4)−0.0006 (4)0.0000 (4)
C60.0225 (5)0.0202 (5)0.0182 (6)−0.0002 (4)−0.0020 (4)0.0002 (4)
C70.0214 (5)0.0182 (5)0.0179 (6)0.0014 (4)0.0000 (4)0.0019 (4)
C80.0214 (5)0.0201 (5)0.0163 (5)−0.0002 (4)−0.0016 (4)−0.0002 (4)
C90.0211 (5)0.0163 (5)0.0177 (5)0.0004 (4)−0.0007 (4)0.0013 (4)
C100.0229 (5)0.0214 (6)0.0212 (6)0.0006 (4)0.0000 (4)0.0029 (4)
C110.0293 (6)0.0178 (6)0.0304 (7)0.0002 (4)−0.0035 (5)0.0051 (5)
C120.0304 (6)0.0196 (6)0.0245 (6)0.0015 (5)−0.0060 (5)0.0039 (5)
C130.0331 (6)0.0182 (6)0.0279 (7)−0.0021 (5)−0.0050 (5)−0.0015 (5)
O1—C11.3797 (15)C6—C71.4050 (17)
O1—C21.3819 (15)C6—H6A0.9300
O2—C81.3048 (15)C7—C81.4366 (17)
O2—H1O21.277 (18)C8—C91.4074 (17)
O3—C101.2590 (16)C9—C101.4550 (17)
O3—H1O21.183 (18)C10—C111.4840 (18)
O4—C11.2121 (15)C11—H11B0.9600
C1—C91.4415 (17)C11—H11C0.9600
C2—C31.3843 (17)C11—H11D0.9600
C2—C71.3884 (17)C12—H12A0.9600
C3—C41.3884 (17)C12—H12B0.9600
C3—H3A0.9300C12—H12C0.9600
C4—C51.4133 (17)C13—H13A0.9600
C4—C121.5022 (17)C13—H13B0.9600
C5—C61.3831 (17)C13—H13C0.9600
C5—C131.5066 (17)
C1—O1—C2121.83 (10)C9—C8—C7120.19 (11)
C8—O2—H1O297.4 (8)C8—C9—C1120.10 (11)
C10—O3—H1O2101.7 (9)C8—C9—C10118.09 (11)
O4—C1—O1115.58 (11)C1—C9—C10121.82 (11)
O4—C1—C9126.59 (12)O3—C10—C9119.06 (12)
O1—C1—C9117.83 (10)O3—C10—C11117.79 (11)
O1—C2—C3116.52 (11)C9—C10—C11123.15 (11)
O1—C2—C7122.39 (11)C10—C11—H11B109.5
C3—C2—C7121.09 (11)C10—C11—H11C109.5
C2—C3—C4119.64 (11)H11B—C11—H11C109.5
C2—C3—H3A120.2C10—C11—H11D109.5
C4—C3—H3A120.2H11B—C11—H11D109.5
C3—C4—C5120.40 (11)H11C—C11—H11D109.5
C3—C4—C12118.59 (11)C4—C12—H12A109.5
C5—C4—C12121.00 (11)C4—C12—H12B109.5
C6—C5—C4118.91 (11)H12A—C12—H12B109.5
C6—C5—C13119.92 (11)C4—C12—H12C109.5
C4—C5—C13121.17 (11)H12A—C12—H12C109.5
C5—C6—C7120.90 (11)H12B—C12—H12C109.5
C5—C6—H6A119.6C5—C13—H13A109.5
C7—C6—H6A119.6C5—C13—H13B109.5
C2—C7—C6118.99 (11)H13A—C13—H13B109.5
C2—C7—C8117.43 (11)C5—C13—H13C109.5
C6—C7—C8123.57 (11)H13A—C13—H13C109.5
O2—C8—C9121.68 (11)H13B—C13—H13C109.5
O2—C8—C7118.12 (11)
C2—O1—C1—O4176.00 (11)C5—C6—C7—C2−0.86 (19)
C2—O1—C1—C9−3.75 (17)C5—C6—C7—C8178.13 (11)
C1—O1—C2—C3179.59 (11)C2—C7—C8—O2177.43 (11)
C1—O1—C2—C7−0.62 (18)C6—C7—C8—O2−1.57 (19)
O1—C2—C3—C4178.64 (11)C2—C7—C8—C9−1.77 (18)
C7—C2—C3—C4−1.15 (19)C6—C7—C8—C9179.23 (11)
C2—C3—C4—C5−1.35 (18)O2—C8—C9—C1178.30 (11)
C2—C3—C4—C12177.66 (11)C7—C8—C9—C1−2.53 (18)
C3—C4—C5—C62.68 (18)O2—C8—C9—C10−1.45 (18)
C12—C4—C5—C6−176.30 (11)C7—C8—C9—C10177.72 (11)
C3—C4—C5—C13−176.65 (12)O4—C1—C9—C8−174.46 (13)
C12—C4—C5—C134.36 (19)O1—C1—C9—C85.26 (17)
C4—C5—C6—C7−1.57 (19)O4—C1—C9—C105.3 (2)
C13—C5—C6—C7177.78 (11)O1—C1—C9—C10−175.00 (11)
O1—C2—C7—C6−177.53 (11)C8—C9—C10—O3−0.23 (18)
C3—C2—C7—C62.25 (19)C1—C9—C10—O3−179.98 (12)
O1—C2—C7—C83.42 (18)C8—C9—C10—C11−179.43 (12)
C3—C2—C7—C8−176.80 (11)C1—C9—C10—C110.82 (19)
D—H···AD—HH···AD···AD—H···A
O2—H1O2···O31.277 (18)1.183 (18)2.4299 (14)162.0 (16)
C6—H6A···O3i0.932.583.4603 (17)159
C11—H11B···O2ii0.962.593.5458 (18)172
C12—H12A···O4iii0.962.533.4751 (17)168
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H1O2⋯O31.277 (18)1.183 (18)2.4299 (14)162.0 (16)
C6—H6A⋯O3i0.932.583.4603 (17)159
C11—H11B⋯O2ii0.962.593.5458 (18)172
C12—H12A⋯O4iii0.962.533.4751 (17)168

Symmetry codes: (i) ; (ii) ; (iii) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Detection of 4-hydroxycoumarin anticoagulants and their metabolites in urine as part of a systematic toxicological analysis procedure for acidic drugs and poisons by gas chromatography-mass spectrometry after extractive methylation.

Authors:  H H Maurer; J W Arlt
Journal:  J Chromatogr B Biomed Sci Appl       Date:  1998-09-04

3.  4-Hydr-oxy-3-[(2E)-3-(3,4,5-trimethoxy-phen-yl)prop-2-eno-yl]-2H-chromen-2-one.

Authors:  Lassaad Mechi; Samar Chtiba; Naceur Hamdi; Rached Ben Hassen
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-06-20

4.  Probing interfacial electron transfer in coumarin 343 sensitized TiO2 nanoparticles with femtosecond stimulated Raman.

Authors:  Renee R Frontiera; Jyotishman Dasgupta; Richard A Mathies
Journal:  J Am Chem Soc       Date:  2009-11-04       Impact factor: 15.419

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total
  1 in total

1.  6-Meth-oxy-4-methyl-2H-chromen-2-one.

Authors:  Hoong-Kun Fun; Jia Hao Goh; Dongdong Wu; Yan Zhang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-12-15
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.