Literature DB >> 21589386

N-Benzyl-pyridin-2-amine.

Gai Gai Wang1, Hong Zhao.   

Abstract

In the title compound, C(12)H(12)N(2), the dihedral angle between the benzene and pyridine rings is 67.63 (8)°. Mol-ecules are linked into centrosymmetric dimers by a simple inter-molecular N-H⋯N hydrogen bond with graph-set motif R(2) (2)(8).

Entities:  

Year:  2010        PMID: 21589386      PMCID: PMC3011657          DOI: 10.1107/S1600536810044351

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the application of Schiff base compounds in coordination chemistry, see: Garnovskii et al. (1993 ▶); Gong & Xu (2008 ▶). For the synthesis, see: Xu et al. (2009 ▶). For graph-set notation of hydrogen bonds, see: Bernstein et al. (1995 ▶). For another report on the structure of N-benzyl­pyridin-2-amine, see: Wang et al. (2010 ▶).

Experimental

Crystal data

C12H12N2 M = 184.24 Triclinic, a = 5.9233 (10) Å b = 8.0984 (15) Å c = 10.602 (2) Å α = 94.916 (15)° β = 91.36 (1)° γ = 94.451 (15)° V = 504.95 (16) Å3 Z = 2 Mo Kα radiation μ = 0.07 mm−1 T = 295 K 0.25 × 0.20 × 0.18 mm

Data collection

Rigaku SCXmini diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2005 ▶) T min = 0.980, T max = 0.997 4612 measured reflections 1955 independent reflections 1039 reflections with I > 2σ(I) R int = 0.062

Refinement

R[F 2 > 2σ(F 2)] = 0.076 wR(F 2) = 0.183 S = 1.06 1955 reflections 127 parameters H-atom parameters constrained Δρmax = 0.14 e Å−3 Δρmin = −0.16 e Å−3 Data collection: CrystalClear (Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL/PC (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL/PC. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810044351/bx2323sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810044351/bx2323Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H12N2Z = 2
Mr = 184.24F(000) = 196
Triclinic, P1Dx = 1.212 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 5.9233 (10) ÅCell parameters from 904 reflections
b = 8.0984 (15) Åθ = 2.5–27.4°
c = 10.602 (2) ŵ = 0.07 mm1
α = 94.916 (15)°T = 295 K
β = 91.36 (1)°Block, pale yellow
γ = 94.451 (15)°0.25 × 0.20 × 0.18 mm
V = 504.95 (16) Å3
Rigaku SCXmini diffractometer1955 independent reflections
Radiation source: fine-focus sealed tube1039 reflections with I > 2σ(I)
graphiteRint = 0.062
Detector resolution: 13.6612 pixels mm-1θmax = 26.0°, θmin = 3.1°
CCD profile fitting scansh = −7→7
Absorption correction: multi-scan (CrystalClear; Rigaku, 2005)k = −9→9
Tmin = 0.980, Tmax = 0.997l = −13→13
4612 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.076Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.183H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.0676P)2] where P = (Fo2 + 2Fc2)/3
1955 reflections(Δ/σ)max < 0.001
127 parametersΔρmax = 0.14 e Å3
0 restraintsΔρmin = −0.15 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.4259 (5)0.1591 (3)0.1743 (3)0.0497 (7)
C20.3612 (5)0.2317 (4)0.2902 (3)0.0606 (9)
H20.23840.29660.29460.073*
C30.4814 (6)0.2060 (4)0.3978 (3)0.0729 (10)
H30.43990.25330.47600.087*
C40.6631 (6)0.1104 (4)0.3901 (3)0.0688 (9)
H40.74940.09400.46170.083*
C50.7120 (5)0.0399 (4)0.2725 (3)0.0616 (9)
H50.8323−0.02740.26670.074*
C60.1290 (5)0.2807 (4)0.0538 (3)0.0609 (9)
H6A0.16240.38740.10220.073*
H6B−0.00120.22450.09030.073*
C70.0728 (5)0.3080 (3)−0.0806 (3)0.0487 (7)
C80.2253 (5)0.3955 (4)−0.1514 (3)0.0616 (8)
H80.36530.4367−0.11550.074*
C90.1723 (6)0.4224 (4)−0.2746 (3)0.0702 (10)
H90.27630.4823−0.32100.084*
C10−0.0325 (6)0.3617 (4)−0.3297 (3)0.0712 (10)
H10−0.06700.3785−0.41350.085*
C11−0.1851 (6)0.2764 (4)−0.2600 (3)0.0686 (10)
H11−0.32570.2362−0.29580.082*
C12−0.1314 (5)0.2501 (4)−0.1371 (3)0.0587 (8)
H12−0.23670.1911−0.09100.070*
N10.3211 (4)0.1824 (3)0.0631 (2)0.0584 (7)
H1A0.37150.1364−0.00550.070*
N20.5982 (4)0.0617 (3)0.1662 (2)0.0553 (7)
U11U22U33U12U13U23
C10.0601 (19)0.0431 (16)0.0460 (18)0.0067 (15)0.0030 (14)0.0010 (13)
C20.075 (2)0.0526 (19)0.055 (2)0.0143 (17)0.0093 (16)0.0009 (14)
C30.100 (3)0.071 (2)0.047 (2)0.012 (2)0.0090 (18)−0.0041 (15)
C40.082 (2)0.068 (2)0.055 (2)0.007 (2)−0.0131 (17)0.0029 (16)
C50.067 (2)0.060 (2)0.058 (2)0.0129 (17)−0.0012 (16)0.0041 (15)
C60.063 (2)0.060 (2)0.061 (2)0.0195 (17)0.0017 (15)0.0045 (15)
C70.0485 (18)0.0403 (16)0.0586 (19)0.0120 (14)0.0035 (14)0.0031 (13)
C80.0514 (19)0.059 (2)0.073 (2)0.0014 (16)0.0016 (16)0.0005 (16)
C90.077 (3)0.063 (2)0.071 (2)−0.0001 (19)0.0092 (19)0.0130 (17)
C100.085 (3)0.069 (2)0.061 (2)0.011 (2)−0.0070 (19)0.0054 (17)
C110.061 (2)0.071 (2)0.072 (2)0.0066 (19)−0.0091 (18)−0.0034 (18)
C120.054 (2)0.0490 (18)0.071 (2)−0.0012 (15)0.0063 (16)0.0000 (15)
N10.0655 (17)0.0619 (17)0.0499 (16)0.0249 (14)0.0036 (12)−0.0015 (11)
N20.0594 (16)0.0534 (15)0.0547 (16)0.0156 (13)0.0023 (12)0.0045 (11)
C1—N21.338 (3)C6—H6B0.9700
C1—N11.354 (3)C7—C121.368 (4)
C1—C21.391 (4)C7—C81.381 (4)
C2—C31.369 (4)C8—C91.376 (4)
C2—H20.9300C8—H80.9300
C3—C41.374 (4)C9—C101.370 (4)
C3—H30.9300C9—H90.9300
C4—C51.373 (4)C10—C111.365 (4)
C4—H40.9300C10—H100.9300
C5—N21.331 (3)C11—C121.372 (4)
C5—H50.9300C11—H110.9300
C6—N11.444 (3)C12—H120.9300
C6—C71.495 (4)N1—H1A0.8600
C6—H6A0.9700
N2—C1—N1115.7 (2)C12—C7—C6121.6 (3)
N2—C1—C2121.5 (3)C8—C7—C6120.7 (3)
N1—C1—C2122.7 (3)C9—C8—C7120.7 (3)
C3—C2—C1118.9 (3)C9—C8—H8119.7
C3—C2—H2120.5C7—C8—H8119.7
C1—C2—H2120.5C10—C9—C8120.6 (3)
C2—C3—C4120.0 (3)C10—C9—H9119.7
C2—C3—H3120.0C8—C9—H9119.7
C4—C3—H3120.0C11—C10—C9119.1 (3)
C5—C4—C3117.3 (3)C11—C10—H10120.4
C5—C4—H4121.3C9—C10—H10120.4
C3—C4—H4121.3C10—C11—C12120.0 (3)
N2—C5—C4124.2 (3)C10—C11—H11120.0
N2—C5—H5117.9C12—C11—H11120.0
C4—C5—H5117.9C7—C12—C11121.9 (3)
N1—C6—C7111.6 (2)C7—C12—H12119.1
N1—C6—H6A109.3C11—C12—H12119.1
C7—C6—H6A109.3C1—N1—C6123.4 (2)
N1—C6—H6B109.3C1—N1—H1A118.3
C7—C6—H6B109.3C6—N1—H1A118.3
H6A—C6—H6B108.0C5—N2—C1118.0 (3)
C12—C7—C8117.7 (3)
N2—C1—C2—C31.8 (4)C9—C10—C11—C12−1.0 (5)
N1—C1—C2—C3−177.8 (3)C8—C7—C12—C110.2 (4)
C1—C2—C3—C40.3 (5)C6—C7—C12—C11179.2 (3)
C2—C3—C4—C5−1.9 (5)C10—C11—C12—C70.4 (5)
C3—C4—C5—N21.6 (5)N2—C1—N1—C6178.6 (2)
N1—C6—C7—C12117.9 (3)C2—C1—N1—C6−1.7 (5)
N1—C6—C7—C8−63.1 (4)C7—C6—N1—C1170.6 (3)
C12—C7—C8—C9−0.2 (4)C4—C5—N2—C10.3 (5)
C6—C7—C8—C9−179.2 (3)N1—C1—N2—C5177.6 (3)
C7—C8—C9—C10−0.5 (5)C2—C1—N2—C5−2.0 (4)
C8—C9—C10—C111.1 (5)
D—H···AD—HH···AD···AD—H···A
N1—H1A···N2i0.862.263.070 (3)158
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯N2i0.862.263.070 (3)158

Symmetry code: (i) .

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3.  N-Benzyl-pyridin-2-amine.

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