Literature DB >> 21589385

N-Benzyl-pyridin-2-amine.

Jun Wang1, Chuntao Dai, Jianhua Nie.   

Abstract

In the crystal of the title compound, C(12)H(12)N(2), inter-molecular N-H⋯N hydrogen bonds form rings of graph-set motif R(2) (2)(8) and C-H⋯π inter-actions further consolidate the dimers. Neighbouring dimers are further connected into a three-dimensional network by C-H⋯π inter-actions. The benzyl and pyridyl rings form a dihedral angle of 67.2 (1)°

Entities:  

Year:  2010        PMID: 21589385      PMCID: PMC3011452          DOI: 10.1107/S1600536810044478

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to the topologies and potential applications of metal coordination polymers, see: Benelli & Gatteschi (2002 ▶). For related structures, see: Davies et al. (2001 ▶); Wan et al. (2004 ▶); Zhou & Richeson (1995 ▶). For bond-length data, see: Allen et al. (1987 ▶). For hydrogen-bonding graph-set motifs, see: Bernstein et al. (1995 ▶). For another report on the structure of N-benzyl­pyridin-2-amine, see: Wang & Zhao (2010 ▶).

Experimental

Crystal data

C12H12N2 M = 184.24 Triclinic, a = 5.9014 (16) Å b = 8.025 (2) Å c = 10.561 (3) Å α = 95.471 (4)° β = 91.244 (4)° γ = 94.779 (3)° V = 495.9 (2) Å3 Z = 2 Mo Kα radiation μ = 0.07 mm−1 T = 296 K 0.23 × 0.20 × 0.19 mm

Data collection

Bruker APEXII area-detector diffractometer 2551 measured reflections 1762 independent reflections 1387 reflections with I > 2σ(I) R int = 0.012

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.115 S = 1.07 1762 reflections 127 parameters H-atom parameters constrained Δρmax = 0.23 e Å−3 Δρmin = −0.24 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810044478/rz2510sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810044478/rz2510Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H12N2Z = 2
Mr = 184.24F(000) = 196
Triclinic, P1Dx = 1.234 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 5.9014 (16) ÅCell parameters from 3415 reflections
b = 8.025 (2) Åθ = 1.2–28.0°
c = 10.561 (3) ŵ = 0.07 mm1
α = 95.471 (4)°T = 296 K
β = 91.244 (4)°Block, colourless
γ = 94.779 (3)°0.23 × 0.20 × 0.19 mm
V = 495.9 (2) Å3
Bruker APEXII area-detector diffractometer1387 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.012
graphiteθmax = 25.3°, θmin = 1.9°
φ and ω scansh = −6→7
2551 measured reflectionsk = −9→9
1762 independent reflectionsl = −9→12
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.042Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.115H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.0576P)2 + 0.0854P] where P = (Fo2 + 2Fc2)/3
1762 reflections(Δ/σ)max < 0.001
127 parametersΔρmax = 0.23 e Å3
0 restraintsΔρmin = −0.24 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C1−0.1362 (3)0.24905 (19)0.36541 (15)0.0350 (4)
H1−0.24270.19090.41220.042*
C20.0725 (3)0.30933 (18)0.42172 (14)0.0308 (4)
C30.2280 (3)0.39773 (19)0.34991 (15)0.0357 (4)
H30.36890.43960.38600.043*
C40.1748 (3)0.4236 (2)0.22596 (16)0.0397 (4)
H40.27980.48320.17930.048*
C5−0.0331 (3)0.3616 (2)0.17061 (16)0.0408 (4)
H5−0.06800.37880.08680.049*
C6−0.1889 (3)0.2740 (2)0.24050 (16)0.0403 (4)
H6−0.32920.23170.20380.048*
C70.1283 (3)0.2820 (2)0.55703 (15)0.0359 (4)
H7A0.16170.38970.60650.043*
H7B−0.00220.22420.59320.043*
C80.4265 (3)0.15939 (18)0.67594 (14)0.0301 (4)
C90.3600 (3)0.23242 (19)0.79450 (14)0.0353 (4)
H90.23600.29680.79980.042*
C100.4814 (3)0.2067 (2)0.90146 (15)0.0412 (4)
H100.44060.25450.98050.049*
C110.6648 (3)0.1099 (2)0.89304 (15)0.0397 (4)
H110.75070.09300.96490.048*
C120.7150 (3)0.03973 (19)0.77449 (15)0.0359 (4)
H120.8367−0.02690.76830.043*
N10.6010 (2)0.06064 (16)0.66736 (12)0.0334 (3)
N20.3221 (2)0.18353 (16)0.56430 (12)0.0355 (3)
H20.37340.13840.49470.043*
U11U22U33U12U13U23
C10.0330 (9)0.0302 (8)0.0414 (9)0.0009 (6)0.0061 (7)0.0020 (7)
C20.0328 (8)0.0249 (7)0.0354 (8)0.0081 (6)0.0040 (6)0.0010 (6)
C30.0314 (9)0.0348 (9)0.0405 (9)0.0005 (7)0.0013 (7)0.0026 (7)
C40.0443 (10)0.0352 (9)0.0403 (9)0.0000 (7)0.0100 (7)0.0075 (7)
C50.0503 (11)0.0386 (9)0.0340 (9)0.0075 (8)−0.0017 (7)0.0041 (7)
C60.0358 (9)0.0403 (9)0.0431 (10)0.0021 (7)−0.0041 (7)−0.0020 (7)
C70.0355 (9)0.0356 (8)0.0378 (9)0.0096 (7)0.0050 (7)0.0037 (7)
C80.0329 (9)0.0249 (7)0.0326 (8)0.0010 (6)0.0036 (6)0.0033 (6)
C90.0410 (10)0.0312 (8)0.0343 (9)0.0064 (7)0.0064 (7)0.0015 (6)
C100.0544 (11)0.0388 (9)0.0301 (9)0.0045 (8)0.0067 (7)−0.0003 (7)
C110.0481 (10)0.0382 (9)0.0323 (9)0.0022 (8)−0.0039 (7)0.0043 (7)
C120.0355 (9)0.0336 (8)0.0389 (9)0.0032 (7)−0.0014 (7)0.0055 (7)
N10.0357 (8)0.0328 (7)0.0322 (7)0.0068 (6)0.0009 (6)0.0022 (5)
N20.0416 (8)0.0377 (7)0.0286 (7)0.0147 (6)0.0023 (6)0.0012 (6)
C1—C21.385 (2)C7—H7B0.9700
C1—C61.386 (2)C8—N11.3502 (19)
C1—H10.9300C8—N21.3559 (19)
C2—C31.395 (2)C8—C91.409 (2)
C2—C71.500 (2)C9—C101.366 (2)
C3—C41.378 (2)C9—H90.9300
C3—H30.9300C10—C111.383 (2)
C4—C51.381 (2)C10—H100.9300
C4—H40.9300C11—C121.372 (2)
C5—C61.380 (2)C11—H110.9300
C5—H50.9300C12—N11.3353 (19)
C6—H60.9300C12—H120.9300
C7—N21.448 (2)N2—H20.8600
C7—H7A0.9700
C2—C1—C6121.05 (15)C2—C7—H7B109.5
C2—C1—H1119.5H7A—C7—H7B108.0
C6—C1—H1119.5N1—C8—N2115.92 (13)
C1—C2—C3118.30 (14)N1—C8—C9121.27 (14)
C1—C2—C7120.76 (14)N2—C8—C9122.81 (14)
C3—C2—C7120.94 (14)C10—C9—C8118.62 (15)
C4—C3—C2120.63 (15)C10—C9—H9120.7
C4—C3—H3119.7C8—C9—H9120.7
C2—C3—H3119.7C9—C10—C11120.44 (15)
C3—C4—C5120.50 (16)C9—C10—H10119.8
C3—C4—H4119.8C11—C10—H10119.8
C5—C4—H4119.8C12—C11—C10117.34 (15)
C6—C5—C4119.57 (15)C12—C11—H11121.3
C6—C5—H5120.2C10—C11—H11121.3
C4—C5—H5120.2N1—C12—C11124.42 (15)
C5—C6—C1119.96 (15)N1—C12—H12117.8
C5—C6—H6120.0C11—C12—H12117.8
C1—C6—H6120.0C12—N1—C8117.85 (13)
N2—C7—C2110.93 (13)C8—N2—C7122.91 (13)
N2—C7—H7A109.5C8—N2—H2118.5
C2—C7—H7A109.5C7—N2—H2118.5
N2—C7—H7B109.5
Cg1 and Cg2 are the centroids of the C1–C6 and N1/C8–C12 rings, respectively.
D—H···AD—HH···AD···AD—H···A
N2—H2···N1i0.862.243.0518 (19)157
C12—H12···Cg1i0.932.723.536 (2)147
C4—H4···Cg2ii0.933.143.804 (2)130
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 and Cg2 are the centroids of the C1–C6 and N1/C8–C12 rings, respectively.

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2⋯N1i0.862.243.0518 (19)157
C12—H12⋯Cg1i0.932.723.536 (2)147
C4—H4⋯Cg2ii0.933.143.804 (2)130

Symmetry codes: (i) ; (ii) .

  4 in total

1.  Magnetism of lanthanides in molecular materials with transition-metal ions and organic radicals.

Authors:  Cristiano Benelli; Dante Gatteschi
Journal:  Chem Rev       Date:  2002-06       Impact factor: 60.622

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Oxygen capture by lithiated organozinc reagents containing aromatic 2-pyridylamide ligands.

Authors:  R P Davies; D J Linton; P Schooler; R Snaith; A E Wheatley
Journal:  Chemistry       Date:  2001-09-03       Impact factor: 5.236

4.  N-Benzyl-pyridin-2-amine.

Authors:  Gai Gai Wang; Hong Zhao
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-11-06
  4 in total
  1 in total

1.  N-Benzyl-pyridin-2-amine.

Authors:  Gai Gai Wang; Hong Zhao
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-11-06
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.