Literature DB >> 21589374

1,3-Bis[4-(meth-oxy-carbon-yl)benz-yl]benzimidazolium bromide monohydrate.

Hua-Rong Huang1, Guo Wen-Jiao, Zhi-Yun Du, Yan-Xiong Fang, Kun Zhang.   

Abstract

In the title compound, C(25)H(23)N(2)O(4) (+)·Br(-)·H(2)O, the dihedral angles between the benzimidazole ring system and the two benzene rings are 87.77 (11) and 63.05 (11)°; the dihedral angle between the two benzene rings is 66.25 (13)°. The crystal structure exhibits C-H⋯O and O-H⋯Br inter-actions; it is also stabilized by π-π stacking inter-actions, with a face-to-face separation of 3.456 Å between parallel benzimidazole ring systems.

Entities:  

Year:  2010        PMID: 21589374      PMCID: PMC3011811          DOI: 10.1107/S1600536810041929

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to and the therapeutic properties of benzimidazole derivatives, see: Herrmann (2002 ▶); Herrmann et al. (1995 ▶, 1998 ▶); Navarro et al. (2006 ▶). For related structures, see: Akkurt et al. (2005 ▶); Pınar et al. (2006 ▶); Arslan et al. (2009 ▶). For reference bond lengths, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C25H23N2O4Br−·H2O M = 513.38 Monoclinic, a = 13.604 (2) Å b = 9.3537 (16) Å c = 18.962 (3) Å β = 107.006 (3)° V = 2307.4 (7) Å3 Z = 4 Mo Kα radiation μ = 1.82 mm−1 T = 110 K 0.39 × 0.36 × 0.35 mm

Data collection

Bruker SMART CCD 1K area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.537, T max = 0.568 13524 measured reflections 5002 independent reflections 3422 reflections with I > 2σ(I) R int = 0.046

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.096 S = 1.05 5002 reflections 300 parameters H-atom parameters constrained Δρmax = 0.78 e Å−3 Δρmin = −0.35 e Å−3 Data collection: SMART (Bruker, 1999 ▶); cell refinement: SAINT-Plus (Bruker, 1999 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810041929/wn2412sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810041929/wn2412Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C25H23N2O4+·Br·H2OF(000) = 1056
Mr = 513.38Dx = 1.478 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3740 reflections
a = 13.604 (2) Åθ = 2.3–26.8°
b = 9.3537 (16) ŵ = 1.82 mm1
c = 18.962 (3) ÅT = 110 K
β = 107.006 (3)°Block, colorless
V = 2307.4 (7) Å30.39 × 0.36 × 0.35 mm
Z = 4
Bruker SMART CCD 1K area-detector diffractometer5002 independent reflections
Radiation source: fine-focus sealed tube3422 reflections with I > 2σ(I)
graphiteRint = 0.046
φ and ω scansθmax = 27.1°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −17→15
Tmin = 0.537, Tmax = 0.568k = −11→11
13524 measured reflectionsl = −18→24
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.041Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.096H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0417P)2 + 0.4447P] where P = (Fo2 + 2Fc2)/3
5002 reflections(Δ/σ)max < 0.001
300 parametersΔρmax = 0.78 e Å3
0 restraintsΔρmin = −0.35 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br10.51077 (2)0.40648 (3)0.834559 (16)0.02439 (10)
C10.6347 (2)0.3275 (3)0.63706 (15)0.0175 (6)
H10.63460.26670.67720.021*
C20.6389 (2)0.5212 (3)0.57082 (15)0.0145 (6)
C30.63019 (19)0.4021 (3)0.52566 (14)0.0137 (6)
C40.6237 (2)0.4155 (3)0.45119 (15)0.0178 (6)
H40.61790.33470.41980.021*
C50.6263 (2)0.5528 (3)0.42594 (16)0.0233 (7)
H50.62230.56680.37560.028*
C60.6346 (2)0.6733 (3)0.47144 (16)0.0214 (7)
H60.63570.76580.45110.026*
C70.6410 (2)0.6601 (3)0.54498 (16)0.0201 (7)
H70.64660.74100.57620.024*
C80.6423 (2)0.5565 (3)0.70503 (15)0.0200 (7)
H8A0.61900.49610.73990.024*
H8B0.59160.63460.68860.024*
C90.7443 (2)0.6214 (3)0.74563 (15)0.0175 (6)
C100.8378 (2)0.5707 (3)0.74080 (15)0.0198 (7)
H100.83980.49230.70940.024*
C110.9281 (2)0.6342 (3)0.78168 (16)0.0209 (7)
H110.99190.59900.77800.025*
C120.9273 (2)0.7487 (3)0.82806 (15)0.0172 (6)
C130.8336 (2)0.7982 (3)0.83393 (16)0.0229 (7)
H130.83170.87460.86650.027*
C140.7432 (2)0.7356 (3)0.79225 (16)0.0237 (7)
H140.67930.77130.79550.028*
C151.0268 (2)0.8163 (3)0.86905 (16)0.0202 (7)
C161.1068 (2)0.9863 (4)0.96014 (18)0.0311 (8)
H16A1.15000.91300.99130.047*
H16B1.08891.05920.99140.047*
H16C1.14431.03090.92900.047*
C170.6111 (2)0.1329 (3)0.54368 (16)0.0180 (6)
H17A0.57440.13150.49020.022*
H17B0.56690.08460.56960.022*
C180.7096 (2)0.0511 (3)0.55708 (16)0.0183 (6)
C190.7559 (2)−0.0094 (3)0.62603 (16)0.0198 (7)
H190.72420.00110.66430.024*
C200.8467 (2)−0.0841 (3)0.63950 (16)0.0203 (6)
H200.8774−0.12500.68670.024*
C210.8938 (2)−0.0994 (3)0.58324 (17)0.0221 (7)
C220.8476 (2)−0.0409 (3)0.51461 (17)0.0246 (7)
H220.8788−0.05260.47620.029*
C230.7567 (2)0.0343 (3)0.50129 (17)0.0238 (7)
H230.72600.07470.45400.029*
C240.9937 (2)−0.1754 (3)0.5955 (2)0.0281 (8)
C251.1340 (2)−0.2807 (4)0.6830 (2)0.0410 (9)
H25A1.1294−0.36720.65310.061*
H25B1.1572−0.30610.73540.061*
H25C1.1832−0.21410.67200.061*
N10.64248 (17)0.4697 (2)0.64073 (12)0.0159 (5)
N20.62711 (17)0.2832 (2)0.56895 (12)0.0150 (5)
O11.10918 (15)0.7850 (2)0.86183 (11)0.0258 (5)
O21.01338 (14)0.9206 (2)0.91378 (11)0.0246 (5)
O31.03392 (18)−0.1982 (3)0.54791 (14)0.0406 (6)
O41.03454 (16)−0.2138 (2)0.66612 (12)0.0312 (5)
O1W0.63208 (16)0.1475 (2)0.77270 (11)0.0273 (5)
H1A0.59600.21140.78510.041*
H1B0.59330.08290.74850.041*
U11U22U33U12U13U23
Br10.02588 (17)0.02610 (17)0.02259 (17)0.00320 (15)0.00927 (12)0.00488 (14)
C10.0135 (15)0.0212 (16)0.0173 (16)0.0022 (12)0.0037 (12)0.0028 (13)
C20.0114 (14)0.0154 (15)0.0157 (15)−0.0003 (11)0.0027 (11)0.0001 (12)
C30.0089 (13)0.0144 (13)0.0162 (14)−0.0020 (12)0.0012 (10)0.0015 (12)
C40.0184 (15)0.0191 (15)0.0160 (14)−0.0049 (13)0.0052 (11)−0.0032 (13)
C50.0225 (16)0.0270 (17)0.0200 (16)−0.0031 (13)0.0054 (13)0.0037 (13)
C60.0181 (16)0.0179 (16)0.0272 (17)−0.0026 (13)0.0054 (13)0.0061 (13)
C70.0178 (16)0.0163 (15)0.0261 (17)−0.0013 (12)0.0065 (13)−0.0001 (13)
C80.0220 (16)0.0240 (16)0.0159 (15)0.0011 (13)0.0087 (12)−0.0054 (12)
C90.0186 (15)0.0216 (16)0.0140 (15)−0.0008 (12)0.0073 (12)0.0011 (12)
C100.0236 (16)0.0175 (15)0.0183 (15)0.0029 (13)0.0062 (12)−0.0007 (12)
C110.0163 (15)0.0210 (16)0.0259 (17)0.0043 (12)0.0069 (13)0.0042 (13)
C120.0175 (15)0.0193 (15)0.0142 (14)−0.0014 (12)0.0040 (12)0.0016 (12)
C130.0238 (17)0.0246 (17)0.0218 (17)−0.0007 (13)0.0091 (13)−0.0083 (13)
C140.0150 (15)0.0323 (18)0.0256 (17)0.0026 (13)0.0084 (13)−0.0106 (14)
C150.0177 (16)0.0213 (16)0.0213 (16)0.0019 (13)0.0051 (12)0.0041 (13)
C160.0222 (18)0.041 (2)0.0300 (19)−0.0085 (15)0.0067 (14)−0.0140 (16)
C170.0208 (16)0.0119 (14)0.0199 (16)−0.0027 (12)0.0039 (12)−0.0001 (12)
C180.0184 (15)0.0118 (14)0.0246 (16)−0.0042 (12)0.0060 (12)−0.0025 (12)
C190.0216 (16)0.0175 (15)0.0223 (16)−0.0033 (13)0.0097 (13)−0.0007 (13)
C200.0196 (15)0.0146 (14)0.0248 (16)−0.0036 (13)0.0033 (12)−0.0004 (13)
C210.0208 (15)0.0135 (14)0.0333 (18)−0.0008 (13)0.0100 (13)−0.0006 (14)
C220.0268 (17)0.0201 (16)0.0306 (18)−0.0003 (14)0.0145 (14)−0.0017 (14)
C230.0291 (18)0.0193 (16)0.0238 (17)0.0008 (14)0.0089 (14)0.0044 (13)
C240.0225 (17)0.0198 (17)0.045 (2)−0.0019 (14)0.0142 (16)0.0007 (15)
C250.0204 (18)0.034 (2)0.064 (3)0.0094 (16)0.0054 (17)−0.0011 (19)
N10.0152 (13)0.0175 (12)0.0161 (13)0.0005 (10)0.0061 (10)−0.0024 (10)
N20.0146 (12)0.0133 (12)0.0163 (13)−0.0014 (10)0.0029 (10)0.0017 (10)
O10.0178 (12)0.0253 (12)0.0345 (13)0.0012 (9)0.0077 (9)−0.0024 (10)
O20.0154 (10)0.0332 (13)0.0247 (11)−0.0023 (10)0.0050 (8)−0.0103 (10)
O30.0364 (14)0.0392 (15)0.0547 (17)0.0107 (12)0.0267 (13)0.0050 (12)
O40.0196 (11)0.0291 (12)0.0432 (15)0.0067 (10)0.0065 (10)0.0029 (11)
O1W0.0282 (12)0.0296 (12)0.0249 (12)−0.0060 (10)0.0092 (10)−0.0058 (10)
C1—N21.331 (3)C15—O11.205 (3)
C1—N11.334 (3)C15—O21.340 (3)
C1—H10.9500C16—O21.453 (3)
C2—C31.389 (4)C16—H16A0.9800
C2—C71.392 (4)C16—H16B0.9800
C2—N11.398 (3)C16—H16C0.9800
C3—N21.390 (3)C17—N21.481 (3)
C3—C41.394 (4)C17—C181.499 (4)
C4—C51.375 (4)C17—H17A0.9900
C4—H40.9500C17—H17B0.9900
C5—C61.403 (4)C18—C191.394 (4)
C5—H50.9500C18—C231.396 (4)
C6—C71.377 (4)C19—C201.378 (4)
C6—H60.9500C19—H190.9500
C7—H70.9500C20—C211.403 (4)
C8—N11.466 (3)C20—H200.9500
C8—C91.504 (4)C21—C221.382 (4)
C8—H8A0.9900C21—C241.490 (4)
C8—H8B0.9900C22—C231.381 (4)
C9—C101.385 (4)C22—H220.9500
C9—C141.390 (4)C23—H230.9500
C10—C111.381 (4)C24—O31.204 (4)
C10—H100.9500C24—O41.340 (4)
C11—C121.388 (4)C25—O41.439 (4)
C11—H110.9500C25—H25A0.9800
C12—C131.391 (4)C25—H25B0.9800
C12—C151.490 (4)C25—H25C0.9800
C13—C141.382 (4)O1W—H1A0.8490
C13—H130.9500O1W—H1B0.8441
C14—H140.9500
N2—C1—N1110.0 (3)O2—C16—H16A109.5
N2—C1—H1125.0O2—C16—H16B109.5
N1—C1—H1125.0H16A—C16—H16B109.5
C3—C2—C7122.6 (3)O2—C16—H16C109.5
C3—C2—N1106.3 (2)H16A—C16—H16C109.5
C7—C2—N1131.1 (3)H16B—C16—H16C109.5
C2—C3—N2106.8 (2)N2—C17—C18112.9 (2)
C2—C3—C4121.4 (2)N2—C17—H17A109.0
N2—C3—C4131.8 (2)C18—C17—H17A109.0
C5—C4—C3115.9 (3)N2—C17—H17B109.0
C5—C4—H4122.1C18—C17—H17B109.0
C3—C4—H4122.1H17A—C17—H17B107.8
C4—C5—C6122.8 (3)C19—C18—C23118.9 (3)
C4—C5—H5118.6C19—C18—C17120.1 (3)
C6—C5—H5118.6C23—C18—C17121.0 (3)
C7—C6—C5121.4 (3)C20—C19—C18120.9 (3)
C7—C6—H6119.3C20—C19—H19119.5
C5—C6—H6119.3C18—C19—H19119.5
C6—C7—C2116.0 (3)C19—C20—C21119.7 (3)
C6—C7—H7122.0C19—C20—H20120.2
C2—C7—H7122.0C21—C20—H20120.2
N1—C8—C9115.1 (2)C22—C21—C20119.5 (3)
N1—C8—H8A108.5C22—C21—C24118.6 (3)
C9—C8—H8A108.5C20—C21—C24121.9 (3)
N1—C8—H8B108.5C23—C22—C21120.7 (3)
C9—C8—H8B108.5C23—C22—H22119.7
H8A—C8—H8B107.5C21—C22—H22119.7
C10—C9—C14119.1 (3)C22—C23—C18120.2 (3)
C10—C9—C8123.8 (3)C22—C23—H23119.9
C14—C9—C8117.1 (2)C18—C23—H23119.9
C11—C10—C9120.0 (3)O3—C24—O4123.7 (3)
C11—C10—H10120.0O3—C24—C21124.2 (3)
C9—C10—H10120.0O4—C24—C21112.2 (3)
C10—C11—C12121.1 (3)O4—C25—H25A109.5
C10—C11—H11119.4O4—C25—H25B109.5
C12—C11—H11119.4H25A—C25—H25B109.5
C11—C12—C13119.0 (3)O4—C25—H25C109.5
C11—C12—C15118.9 (3)H25A—C25—H25C109.5
C13—C12—C15122.1 (3)H25B—C25—H25C109.5
C14—C13—C12119.8 (3)C1—N1—C2108.3 (2)
C14—C13—H13120.1C1—N1—C8125.2 (2)
C12—C13—H13120.1C2—N1—C8126.1 (2)
C13—C14—C9121.0 (3)C1—N2—C3108.5 (2)
C13—C14—H14119.5C1—N2—C17124.8 (2)
C9—C14—H14119.5C3—N2—C17126.5 (2)
O1—C15—O2123.5 (3)C15—O2—C16115.7 (2)
O1—C15—C12124.8 (3)C24—O4—C25115.3 (3)
O2—C15—C12111.6 (2)H1A—O1W—H1B109.6
C7—C2—C3—N2−178.0 (2)C19—C20—C21—C22−0.9 (4)
N1—C2—C3—N20.9 (3)C19—C20—C21—C24178.2 (3)
C7—C2—C3—C40.5 (4)C20—C21—C22—C231.1 (4)
N1—C2—C3—C4179.4 (2)C24—C21—C22—C23−178.0 (3)
C2—C3—C4—C5−0.1 (4)C21—C22—C23—C18−0.6 (4)
N2—C3—C4—C5177.9 (3)C19—C18—C23—C22−0.2 (4)
C3—C4—C5—C6−0.2 (4)C17—C18—C23—C22179.8 (3)
C4—C5—C6—C70.2 (4)C22—C21—C24—O3−5.4 (5)
C5—C6—C7—C20.1 (4)C20—C21—C24—O3175.5 (3)
C3—C2—C7—C6−0.4 (4)C22—C21—C24—O4173.7 (3)
N1—C2—C7—C6−179.1 (3)C20—C21—C24—O4−5.3 (4)
N1—C8—C9—C10−20.6 (4)N2—C1—N1—C20.5 (3)
N1—C8—C9—C14161.6 (3)N2—C1—N1—C8173.9 (2)
C14—C9—C10—C11−0.4 (4)C3—C2—N1—C1−0.9 (3)
C8—C9—C10—C11−178.1 (3)C7—C2—N1—C1177.9 (3)
C9—C10—C11—C120.1 (4)C3—C2—N1—C8−174.2 (2)
C10—C11—C12—C131.0 (4)C7—C2—N1—C84.6 (5)
C10—C11—C12—C15−178.0 (3)C9—C8—N1—C1108.2 (3)
C11—C12—C13—C14−1.8 (4)C9—C8—N1—C2−79.5 (3)
C15—C12—C13—C14177.2 (3)N1—C1—N2—C30.1 (3)
C12—C13—C14—C91.6 (5)N1—C1—N2—C17−176.2 (2)
C10—C9—C14—C13−0.5 (4)C2—C3—N2—C1−0.7 (3)
C8—C9—C14—C13177.4 (3)C4—C3—N2—C1−178.9 (3)
C11—C12—C15—O14.8 (4)C2—C3—N2—C17175.5 (2)
C13—C12—C15—O1−174.2 (3)C4—C3—N2—C17−2.7 (5)
C11—C12—C15—O2−177.2 (2)C18—C17—N2—C1−86.9 (3)
C13—C12—C15—O23.9 (4)C18—C17—N2—C397.5 (3)
N2—C17—C18—C1983.0 (3)O1—C15—O2—C16−6.2 (4)
N2—C17—C18—C23−96.9 (3)C12—C15—O2—C16175.7 (2)
C23—C18—C19—C200.4 (4)O3—C24—O4—C252.5 (5)
C17—C18—C19—C20−179.6 (3)C21—C24—O4—C25−176.6 (3)
C18—C19—C20—C210.2 (4)
D—H···AD—HH···AD···AD—H···A
C1—H1···O1W0.952.143.083 (3)175.
O1W—H1A···Br10.852.493.332 (2)173.
O1W—H1B···Br1i0.842.433.269 (2)173.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C1—H1⋯O1W0.952.143.083 (3)175
O1W—H1A⋯Br10.852.493.332 (2)173
O1W—H1B⋯Br1i0.842.433.269 (2)173

Symmetry code: (i) .

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Journal:  J Org Chem       Date:  2006-01-20       Impact factor: 4.354

3.  1-(4-tert-Butyl-benz-yl)-3-(3,4,5-tri-methoxy-benz-yl)benzimidazolium bromide monohydrate.

Authors:  Hakan Arslan; Don Vanderveer; Serpil Demir; Ismail Ozdemir; Bekir Cetinkaya
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-12-24

4.  N-heterocyclic carbenes: a new concept in organometallic catalysis.

Authors:  Wolfgang A Herrmann
Journal:  Angew Chem Int Ed Engl       Date:  2002-04-15       Impact factor: 15.336

  4 in total
  1 in total

1.  1,4-Bis[4-(meth-oxy-carbon-yl)benz-yl]-1H-1,2,4-triazol-4-ium bromide.

Authors:  Wen-Jiao Guo; Hua-Rong Huang; Zhi-Yun Du; Yan-Xiong Fang; Kun Zhang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-04-28
  1 in total

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