| Literature DB >> 21589374 |
Hua-Rong Huang1, Guo Wen-Jiao, Zhi-Yun Du, Yan-Xiong Fang, Kun Zhang.
Abstract
In the title compound, C(25)H(23)N(2)O(4) (+)·Br(-)·H(2)O, the dihedral angles between the benzimidazole ring system and the two benzene rings are 87.77 (11) and 63.05 (11)°; the dihedral angle between the two benzene rings is 66.25 (13)°. The crystal structure exhibits C-H⋯O and O-H⋯Br inter-actions; it is also stabilized by π-π stacking inter-actions, with a face-to-face separation of 3.456 Å between parallel benzimidazole ring systems.Entities:
Year: 2010 PMID: 21589374 PMCID: PMC3011811 DOI: 10.1107/S1600536810041929
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C25H23N2O4+·Br−·H2O | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 3740 reflections |
| θ = 2.3–26.8° | |
| µ = 1.82 mm−1 | |
| β = 107.006 (3)° | Block, colorless |
| 0.39 × 0.36 × 0.35 mm | |
| Bruker SMART CCD 1K area-detector diffractometer | 5002 independent reflections |
| Radiation source: fine-focus sealed tube | 3422 reflections with |
| graphite | |
| φ and ω scans | θmax = 27.1°, θmin = 2.3° |
| Absorption correction: multi-scan ( | |
| 13524 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 5002 reflections | (Δ/σ)max < 0.001 |
| 300 parameters | Δρmax = 0.78 e Å−3 |
| 0 restraints | Δρmin = −0.35 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Br1 | 0.51077 (2) | 0.40648 (3) | 0.834559 (16) | 0.02439 (10) | |
| C1 | 0.6347 (2) | 0.3275 (3) | 0.63706 (15) | 0.0175 (6) | |
| H1 | 0.6346 | 0.2667 | 0.6772 | 0.021* | |
| C2 | 0.6389 (2) | 0.5212 (3) | 0.57082 (15) | 0.0145 (6) | |
| C3 | 0.63019 (19) | 0.4021 (3) | 0.52566 (14) | 0.0137 (6) | |
| C4 | 0.6237 (2) | 0.4155 (3) | 0.45119 (15) | 0.0178 (6) | |
| H4 | 0.6179 | 0.3347 | 0.4198 | 0.021* | |
| C5 | 0.6263 (2) | 0.5528 (3) | 0.42594 (16) | 0.0233 (7) | |
| H5 | 0.6223 | 0.5668 | 0.3756 | 0.028* | |
| C6 | 0.6346 (2) | 0.6733 (3) | 0.47144 (16) | 0.0214 (7) | |
| H6 | 0.6357 | 0.7658 | 0.4511 | 0.026* | |
| C7 | 0.6410 (2) | 0.6601 (3) | 0.54498 (16) | 0.0201 (7) | |
| H7 | 0.6466 | 0.7410 | 0.5762 | 0.024* | |
| C8 | 0.6423 (2) | 0.5565 (3) | 0.70503 (15) | 0.0200 (7) | |
| H8A | 0.6190 | 0.4961 | 0.7399 | 0.024* | |
| H8B | 0.5916 | 0.6346 | 0.6886 | 0.024* | |
| C9 | 0.7443 (2) | 0.6214 (3) | 0.74563 (15) | 0.0175 (6) | |
| C10 | 0.8378 (2) | 0.5707 (3) | 0.74080 (15) | 0.0198 (7) | |
| H10 | 0.8398 | 0.4923 | 0.7094 | 0.024* | |
| C11 | 0.9281 (2) | 0.6342 (3) | 0.78168 (16) | 0.0209 (7) | |
| H11 | 0.9919 | 0.5990 | 0.7780 | 0.025* | |
| C12 | 0.9273 (2) | 0.7487 (3) | 0.82806 (15) | 0.0172 (6) | |
| C13 | 0.8336 (2) | 0.7982 (3) | 0.83393 (16) | 0.0229 (7) | |
| H13 | 0.8317 | 0.8746 | 0.8665 | 0.027* | |
| C14 | 0.7432 (2) | 0.7356 (3) | 0.79225 (16) | 0.0237 (7) | |
| H14 | 0.6793 | 0.7713 | 0.7955 | 0.028* | |
| C15 | 1.0268 (2) | 0.8163 (3) | 0.86905 (16) | 0.0202 (7) | |
| C16 | 1.1068 (2) | 0.9863 (4) | 0.96014 (18) | 0.0311 (8) | |
| H16A | 1.1500 | 0.9130 | 0.9913 | 0.047* | |
| H16B | 1.0889 | 1.0592 | 0.9914 | 0.047* | |
| H16C | 1.1443 | 1.0309 | 0.9290 | 0.047* | |
| C17 | 0.6111 (2) | 0.1329 (3) | 0.54368 (16) | 0.0180 (6) | |
| H17A | 0.5744 | 0.1315 | 0.4902 | 0.022* | |
| H17B | 0.5669 | 0.0846 | 0.5696 | 0.022* | |
| C18 | 0.7096 (2) | 0.0511 (3) | 0.55708 (16) | 0.0183 (6) | |
| C19 | 0.7559 (2) | −0.0094 (3) | 0.62603 (16) | 0.0198 (7) | |
| H19 | 0.7242 | 0.0011 | 0.6643 | 0.024* | |
| C20 | 0.8467 (2) | −0.0841 (3) | 0.63950 (16) | 0.0203 (6) | |
| H20 | 0.8774 | −0.1250 | 0.6867 | 0.024* | |
| C21 | 0.8938 (2) | −0.0994 (3) | 0.58324 (17) | 0.0221 (7) | |
| C22 | 0.8476 (2) | −0.0409 (3) | 0.51461 (17) | 0.0246 (7) | |
| H22 | 0.8788 | −0.0526 | 0.4762 | 0.029* | |
| C23 | 0.7567 (2) | 0.0343 (3) | 0.50129 (17) | 0.0238 (7) | |
| H23 | 0.7260 | 0.0747 | 0.4540 | 0.029* | |
| C24 | 0.9937 (2) | −0.1754 (3) | 0.5955 (2) | 0.0281 (8) | |
| C25 | 1.1340 (2) | −0.2807 (4) | 0.6830 (2) | 0.0410 (9) | |
| H25A | 1.1294 | −0.3672 | 0.6531 | 0.061* | |
| H25B | 1.1572 | −0.3061 | 0.7354 | 0.061* | |
| H25C | 1.1832 | −0.2141 | 0.6720 | 0.061* | |
| N1 | 0.64248 (17) | 0.4697 (2) | 0.64073 (12) | 0.0159 (5) | |
| N2 | 0.62711 (17) | 0.2832 (2) | 0.56895 (12) | 0.0150 (5) | |
| O1 | 1.10918 (15) | 0.7850 (2) | 0.86183 (11) | 0.0258 (5) | |
| O2 | 1.01338 (14) | 0.9206 (2) | 0.91378 (11) | 0.0246 (5) | |
| O3 | 1.03392 (18) | −0.1982 (3) | 0.54791 (14) | 0.0406 (6) | |
| O4 | 1.03454 (16) | −0.2138 (2) | 0.66612 (12) | 0.0312 (5) | |
| O1W | 0.63208 (16) | 0.1475 (2) | 0.77270 (11) | 0.0273 (5) | |
| H1A | 0.5960 | 0.2114 | 0.7851 | 0.041* | |
| H1B | 0.5933 | 0.0829 | 0.7485 | 0.041* |
| Br1 | 0.02588 (17) | 0.02610 (17) | 0.02259 (17) | 0.00320 (15) | 0.00927 (12) | 0.00488 (14) |
| C1 | 0.0135 (15) | 0.0212 (16) | 0.0173 (16) | 0.0022 (12) | 0.0037 (12) | 0.0028 (13) |
| C2 | 0.0114 (14) | 0.0154 (15) | 0.0157 (15) | −0.0003 (11) | 0.0027 (11) | 0.0001 (12) |
| C3 | 0.0089 (13) | 0.0144 (13) | 0.0162 (14) | −0.0020 (12) | 0.0012 (10) | 0.0015 (12) |
| C4 | 0.0184 (15) | 0.0191 (15) | 0.0160 (14) | −0.0049 (13) | 0.0052 (11) | −0.0032 (13) |
| C5 | 0.0225 (16) | 0.0270 (17) | 0.0200 (16) | −0.0031 (13) | 0.0054 (13) | 0.0037 (13) |
| C6 | 0.0181 (16) | 0.0179 (16) | 0.0272 (17) | −0.0026 (13) | 0.0054 (13) | 0.0061 (13) |
| C7 | 0.0178 (16) | 0.0163 (15) | 0.0261 (17) | −0.0013 (12) | 0.0065 (13) | −0.0001 (13) |
| C8 | 0.0220 (16) | 0.0240 (16) | 0.0159 (15) | 0.0011 (13) | 0.0087 (12) | −0.0054 (12) |
| C9 | 0.0186 (15) | 0.0216 (16) | 0.0140 (15) | −0.0008 (12) | 0.0073 (12) | 0.0011 (12) |
| C10 | 0.0236 (16) | 0.0175 (15) | 0.0183 (15) | 0.0029 (13) | 0.0062 (12) | −0.0007 (12) |
| C11 | 0.0163 (15) | 0.0210 (16) | 0.0259 (17) | 0.0043 (12) | 0.0069 (13) | 0.0042 (13) |
| C12 | 0.0175 (15) | 0.0193 (15) | 0.0142 (14) | −0.0014 (12) | 0.0040 (12) | 0.0016 (12) |
| C13 | 0.0238 (17) | 0.0246 (17) | 0.0218 (17) | −0.0007 (13) | 0.0091 (13) | −0.0083 (13) |
| C14 | 0.0150 (15) | 0.0323 (18) | 0.0256 (17) | 0.0026 (13) | 0.0084 (13) | −0.0106 (14) |
| C15 | 0.0177 (16) | 0.0213 (16) | 0.0213 (16) | 0.0019 (13) | 0.0051 (12) | 0.0041 (13) |
| C16 | 0.0222 (18) | 0.041 (2) | 0.0300 (19) | −0.0085 (15) | 0.0067 (14) | −0.0140 (16) |
| C17 | 0.0208 (16) | 0.0119 (14) | 0.0199 (16) | −0.0027 (12) | 0.0039 (12) | −0.0001 (12) |
| C18 | 0.0184 (15) | 0.0118 (14) | 0.0246 (16) | −0.0042 (12) | 0.0060 (12) | −0.0025 (12) |
| C19 | 0.0216 (16) | 0.0175 (15) | 0.0223 (16) | −0.0033 (13) | 0.0097 (13) | −0.0007 (13) |
| C20 | 0.0196 (15) | 0.0146 (14) | 0.0248 (16) | −0.0036 (13) | 0.0033 (12) | −0.0004 (13) |
| C21 | 0.0208 (15) | 0.0135 (14) | 0.0333 (18) | −0.0008 (13) | 0.0100 (13) | −0.0006 (14) |
| C22 | 0.0268 (17) | 0.0201 (16) | 0.0306 (18) | −0.0003 (14) | 0.0145 (14) | −0.0017 (14) |
| C23 | 0.0291 (18) | 0.0193 (16) | 0.0238 (17) | 0.0008 (14) | 0.0089 (14) | 0.0044 (13) |
| C24 | 0.0225 (17) | 0.0198 (17) | 0.045 (2) | −0.0019 (14) | 0.0142 (16) | 0.0007 (15) |
| C25 | 0.0204 (18) | 0.034 (2) | 0.064 (3) | 0.0094 (16) | 0.0054 (17) | −0.0011 (19) |
| N1 | 0.0152 (13) | 0.0175 (12) | 0.0161 (13) | 0.0005 (10) | 0.0061 (10) | −0.0024 (10) |
| N2 | 0.0146 (12) | 0.0133 (12) | 0.0163 (13) | −0.0014 (10) | 0.0029 (10) | 0.0017 (10) |
| O1 | 0.0178 (12) | 0.0253 (12) | 0.0345 (13) | 0.0012 (9) | 0.0077 (9) | −0.0024 (10) |
| O2 | 0.0154 (10) | 0.0332 (13) | 0.0247 (11) | −0.0023 (10) | 0.0050 (8) | −0.0103 (10) |
| O3 | 0.0364 (14) | 0.0392 (15) | 0.0547 (17) | 0.0107 (12) | 0.0267 (13) | 0.0050 (12) |
| O4 | 0.0196 (11) | 0.0291 (12) | 0.0432 (15) | 0.0067 (10) | 0.0065 (10) | 0.0029 (11) |
| O1W | 0.0282 (12) | 0.0296 (12) | 0.0249 (12) | −0.0060 (10) | 0.0092 (10) | −0.0058 (10) |
| C1—N2 | 1.331 (3) | C15—O1 | 1.205 (3) |
| C1—N1 | 1.334 (3) | C15—O2 | 1.340 (3) |
| C1—H1 | 0.9500 | C16—O2 | 1.453 (3) |
| C2—C3 | 1.389 (4) | C16—H16A | 0.9800 |
| C2—C7 | 1.392 (4) | C16—H16B | 0.9800 |
| C2—N1 | 1.398 (3) | C16—H16C | 0.9800 |
| C3—N2 | 1.390 (3) | C17—N2 | 1.481 (3) |
| C3—C4 | 1.394 (4) | C17—C18 | 1.499 (4) |
| C4—C5 | 1.375 (4) | C17—H17A | 0.9900 |
| C4—H4 | 0.9500 | C17—H17B | 0.9900 |
| C5—C6 | 1.403 (4) | C18—C19 | 1.394 (4) |
| C5—H5 | 0.9500 | C18—C23 | 1.396 (4) |
| C6—C7 | 1.377 (4) | C19—C20 | 1.378 (4) |
| C6—H6 | 0.9500 | C19—H19 | 0.9500 |
| C7—H7 | 0.9500 | C20—C21 | 1.403 (4) |
| C8—N1 | 1.466 (3) | C20—H20 | 0.9500 |
| C8—C9 | 1.504 (4) | C21—C22 | 1.382 (4) |
| C8—H8A | 0.9900 | C21—C24 | 1.490 (4) |
| C8—H8B | 0.9900 | C22—C23 | 1.381 (4) |
| C9—C10 | 1.385 (4) | C22—H22 | 0.9500 |
| C9—C14 | 1.390 (4) | C23—H23 | 0.9500 |
| C10—C11 | 1.381 (4) | C24—O3 | 1.204 (4) |
| C10—H10 | 0.9500 | C24—O4 | 1.340 (4) |
| C11—C12 | 1.388 (4) | C25—O4 | 1.439 (4) |
| C11—H11 | 0.9500 | C25—H25A | 0.9800 |
| C12—C13 | 1.391 (4) | C25—H25B | 0.9800 |
| C12—C15 | 1.490 (4) | C25—H25C | 0.9800 |
| C13—C14 | 1.382 (4) | O1W—H1A | 0.8490 |
| C13—H13 | 0.9500 | O1W—H1B | 0.8441 |
| C14—H14 | 0.9500 | ||
| N2—C1—N1 | 110.0 (3) | O2—C16—H16A | 109.5 |
| N2—C1—H1 | 125.0 | O2—C16—H16B | 109.5 |
| N1—C1—H1 | 125.0 | H16A—C16—H16B | 109.5 |
| C3—C2—C7 | 122.6 (3) | O2—C16—H16C | 109.5 |
| C3—C2—N1 | 106.3 (2) | H16A—C16—H16C | 109.5 |
| C7—C2—N1 | 131.1 (3) | H16B—C16—H16C | 109.5 |
| C2—C3—N2 | 106.8 (2) | N2—C17—C18 | 112.9 (2) |
| C2—C3—C4 | 121.4 (2) | N2—C17—H17A | 109.0 |
| N2—C3—C4 | 131.8 (2) | C18—C17—H17A | 109.0 |
| C5—C4—C3 | 115.9 (3) | N2—C17—H17B | 109.0 |
| C5—C4—H4 | 122.1 | C18—C17—H17B | 109.0 |
| C3—C4—H4 | 122.1 | H17A—C17—H17B | 107.8 |
| C4—C5—C6 | 122.8 (3) | C19—C18—C23 | 118.9 (3) |
| C4—C5—H5 | 118.6 | C19—C18—C17 | 120.1 (3) |
| C6—C5—H5 | 118.6 | C23—C18—C17 | 121.0 (3) |
| C7—C6—C5 | 121.4 (3) | C20—C19—C18 | 120.9 (3) |
| C7—C6—H6 | 119.3 | C20—C19—H19 | 119.5 |
| C5—C6—H6 | 119.3 | C18—C19—H19 | 119.5 |
| C6—C7—C2 | 116.0 (3) | C19—C20—C21 | 119.7 (3) |
| C6—C7—H7 | 122.0 | C19—C20—H20 | 120.2 |
| C2—C7—H7 | 122.0 | C21—C20—H20 | 120.2 |
| N1—C8—C9 | 115.1 (2) | C22—C21—C20 | 119.5 (3) |
| N1—C8—H8A | 108.5 | C22—C21—C24 | 118.6 (3) |
| C9—C8—H8A | 108.5 | C20—C21—C24 | 121.9 (3) |
| N1—C8—H8B | 108.5 | C23—C22—C21 | 120.7 (3) |
| C9—C8—H8B | 108.5 | C23—C22—H22 | 119.7 |
| H8A—C8—H8B | 107.5 | C21—C22—H22 | 119.7 |
| C10—C9—C14 | 119.1 (3) | C22—C23—C18 | 120.2 (3) |
| C10—C9—C8 | 123.8 (3) | C22—C23—H23 | 119.9 |
| C14—C9—C8 | 117.1 (2) | C18—C23—H23 | 119.9 |
| C11—C10—C9 | 120.0 (3) | O3—C24—O4 | 123.7 (3) |
| C11—C10—H10 | 120.0 | O3—C24—C21 | 124.2 (3) |
| C9—C10—H10 | 120.0 | O4—C24—C21 | 112.2 (3) |
| C10—C11—C12 | 121.1 (3) | O4—C25—H25A | 109.5 |
| C10—C11—H11 | 119.4 | O4—C25—H25B | 109.5 |
| C12—C11—H11 | 119.4 | H25A—C25—H25B | 109.5 |
| C11—C12—C13 | 119.0 (3) | O4—C25—H25C | 109.5 |
| C11—C12—C15 | 118.9 (3) | H25A—C25—H25C | 109.5 |
| C13—C12—C15 | 122.1 (3) | H25B—C25—H25C | 109.5 |
| C14—C13—C12 | 119.8 (3) | C1—N1—C2 | 108.3 (2) |
| C14—C13—H13 | 120.1 | C1—N1—C8 | 125.2 (2) |
| C12—C13—H13 | 120.1 | C2—N1—C8 | 126.1 (2) |
| C13—C14—C9 | 121.0 (3) | C1—N2—C3 | 108.5 (2) |
| C13—C14—H14 | 119.5 | C1—N2—C17 | 124.8 (2) |
| C9—C14—H14 | 119.5 | C3—N2—C17 | 126.5 (2) |
| O1—C15—O2 | 123.5 (3) | C15—O2—C16 | 115.7 (2) |
| O1—C15—C12 | 124.8 (3) | C24—O4—C25 | 115.3 (3) |
| O2—C15—C12 | 111.6 (2) | H1A—O1W—H1B | 109.6 |
| C7—C2—C3—N2 | −178.0 (2) | C19—C20—C21—C22 | −0.9 (4) |
| N1—C2—C3—N2 | 0.9 (3) | C19—C20—C21—C24 | 178.2 (3) |
| C7—C2—C3—C4 | 0.5 (4) | C20—C21—C22—C23 | 1.1 (4) |
| N1—C2—C3—C4 | 179.4 (2) | C24—C21—C22—C23 | −178.0 (3) |
| C2—C3—C4—C5 | −0.1 (4) | C21—C22—C23—C18 | −0.6 (4) |
| N2—C3—C4—C5 | 177.9 (3) | C19—C18—C23—C22 | −0.2 (4) |
| C3—C4—C5—C6 | −0.2 (4) | C17—C18—C23—C22 | 179.8 (3) |
| C4—C5—C6—C7 | 0.2 (4) | C22—C21—C24—O3 | −5.4 (5) |
| C5—C6—C7—C2 | 0.1 (4) | C20—C21—C24—O3 | 175.5 (3) |
| C3—C2—C7—C6 | −0.4 (4) | C22—C21—C24—O4 | 173.7 (3) |
| N1—C2—C7—C6 | −179.1 (3) | C20—C21—C24—O4 | −5.3 (4) |
| N1—C8—C9—C10 | −20.6 (4) | N2—C1—N1—C2 | 0.5 (3) |
| N1—C8—C9—C14 | 161.6 (3) | N2—C1—N1—C8 | 173.9 (2) |
| C14—C9—C10—C11 | −0.4 (4) | C3—C2—N1—C1 | −0.9 (3) |
| C8—C9—C10—C11 | −178.1 (3) | C7—C2—N1—C1 | 177.9 (3) |
| C9—C10—C11—C12 | 0.1 (4) | C3—C2—N1—C8 | −174.2 (2) |
| C10—C11—C12—C13 | 1.0 (4) | C7—C2—N1—C8 | 4.6 (5) |
| C10—C11—C12—C15 | −178.0 (3) | C9—C8—N1—C1 | 108.2 (3) |
| C11—C12—C13—C14 | −1.8 (4) | C9—C8—N1—C2 | −79.5 (3) |
| C15—C12—C13—C14 | 177.2 (3) | N1—C1—N2—C3 | 0.1 (3) |
| C12—C13—C14—C9 | 1.6 (5) | N1—C1—N2—C17 | −176.2 (2) |
| C10—C9—C14—C13 | −0.5 (4) | C2—C3—N2—C1 | −0.7 (3) |
| C8—C9—C14—C13 | 177.4 (3) | C4—C3—N2—C1 | −178.9 (3) |
| C11—C12—C15—O1 | 4.8 (4) | C2—C3—N2—C17 | 175.5 (2) |
| C13—C12—C15—O1 | −174.2 (3) | C4—C3—N2—C17 | −2.7 (5) |
| C11—C12—C15—O2 | −177.2 (2) | C18—C17—N2—C1 | −86.9 (3) |
| C13—C12—C15—O2 | 3.9 (4) | C18—C17—N2—C3 | 97.5 (3) |
| N2—C17—C18—C19 | 83.0 (3) | O1—C15—O2—C16 | −6.2 (4) |
| N2—C17—C18—C23 | −96.9 (3) | C12—C15—O2—C16 | 175.7 (2) |
| C23—C18—C19—C20 | 0.4 (4) | O3—C24—O4—C25 | 2.5 (5) |
| C17—C18—C19—C20 | −179.6 (3) | C21—C24—O4—C25 | −176.6 (3) |
| C18—C19—C20—C21 | 0.2 (4) |
| H··· | ||||
| C1—H1···O1W | 0.95 | 2.14 | 3.083 (3) | 175. |
| O1W—H1A···Br1 | 0.85 | 2.49 | 3.332 (2) | 173. |
| O1W—H1B···Br1i | 0.84 | 2.43 | 3.269 (2) | 173. |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| C1—H1⋯O1 | 0.95 | 2.14 | 3.083 (3) | 175 |
| O1 | 0.85 | 2.49 | 3.332 (2) | 173 |
| O1 | 0.84 | 2.43 | 3.269 (2) | 173 |
Symmetry code: (i) .