Literature DB >> 21581662

1-(4-tert-Butyl-benz-yl)-3-(3,4,5-tri-methoxy-benz-yl)benzimidazolium bromide monohydrate.

Hakan Arslan, Don Vanderveer, Serpil Demir, Ismail Ozdemir, Bekir Cetinkaya.   

Abstract

A novel N-heterocyclic carbene derivative, C(28)H(33)N(2)O(3) (+)·Br(-)·H(2)O, was synthesized and characterized by elemental analysis, (1)H and (13)C-NMR and IR spectroscopy and a single-crystal X-ray diffraction study. Ions of the title compound are linked by π⋯π stacking inter-actions (face-face separation 3.441 Å) and C-H⋯Br and O-H⋯Br inter-actions. Intra- and intermolecular C-H⋯O inter-actions are also present. The C-N bond lengths for the compound [1.329 (3), 1.325 (3), 1.389 (3) and 1.391 (3) Å] are all shorter than the average single C-N bond length of 1.48 Å, thus showing varying degrees of double-bond character.

Entities:  

Year:  2008        PMID: 21581662      PMCID: PMC2968113          DOI: 10.1107/S1600536808043250

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis, see: Yaşar et al. (2008 ▶). For general background, see: Herrmann (2002 ▶); Arduengo & Krafczyc (1998 ▶); Herrmann et al. (1995 ▶, 1998 ▶); Navarro et al. (2006 ▶). For related compounds, see: Yaşar et al. (2008 ▶); Arslan et al. (2009 ▶ and references therein). For bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C28H33N2O3Br−·H2O M = 543.49 Triclinic, a = 10.389 (2) Å b = 10.436 (2) Å c = 14.038 (3) Å α = 109.79 (3)° β = 90.70 (3)° γ = 103.57 (3)° V = 1385.1 (6) Å3 Z = 2 Mo Kα radiation μ = 1.52 mm−1 T = 298 (2) K 0.48 × 0.29 × 0.26 mm

Data collection

Mercury CCD diffractometer Absorption correction: multi-scan (REQAB; Jacobson, 1998 ▶) T min = 0.514, T max = 0.673 11938 measured reflections 4860 independent reflections 3921 reflections with I > 2σ(I) R int = 0.022

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.112 S = 1.08 4860 reflections 328 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.31 e Å−3 Δρmin = −0.55 e Å−3 Data collection: CrystalClear (Rigaku/MSC, 2001 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL and Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I. DOI: 10.1107/S1600536808043250/hg2459sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808043250/hg2459Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C28H33N2O3+·Br·H2OZ = 2
Mr = 543.49F(000) = 568
Triclinic, P1Dx = 1.303 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 10.389 (2) ÅCell parameters from 4659 reflections
b = 10.436 (2) Åθ = 3.2–26.4°
c = 14.038 (3) ŵ = 1.52 mm1
α = 109.79 (3)°T = 298 K
β = 90.70 (3)°Rod, colorless
γ = 103.57 (3)°0.48 × 0.29 × 0.26 mm
V = 1385.1 (6) Å3
Mercury CCD diffractometer4860 independent reflections
Radiation source: Sealed Tube3921 reflections with I > 2σ(I)
Graphite MonochromatorRint = 0.022
Detector resolution: 14.6306 pixels mm-1θmax = 25.0°, θmin = 3.2°
ω scansh = −12→12
Absorption correction: multi-scan (REQAB; Jacobson, 1998)k = −12→12
Tmin = 0.514, Tmax = 0.673l = −16→16
11938 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.042Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.112H atoms treated by a mixture of independent and constrained refinement
S = 1.08w = 1/[σ2(Fo2) + (0.0505P)2 + 0.6557P] where P = (Fo2 + 2Fc2)/3
4860 reflections(Δ/σ)max = 0.001
328 parametersΔρmax = 0.31 e Å3
2 restraintsΔρmin = −0.55 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br10.75295 (3)0.93707 (4)0.51515 (3)0.06917 (15)
N10.8315 (2)0.5830 (2)0.57685 (15)0.0384 (5)
N21.0326 (2)0.7189 (2)0.62364 (16)0.0407 (5)
C10.9118 (3)0.7064 (3)0.5843 (2)0.0439 (6)
H10.88580.77660.56400.053*
C21.0322 (2)0.5974 (2)0.64403 (18)0.0363 (5)
C31.1313 (3)0.5558 (3)0.6834 (2)0.0497 (7)
H31.21960.61590.70500.060*
C41.0966 (3)0.4233 (3)0.6901 (2)0.0609 (8)
H41.16260.39020.71680.073*
C50.9681 (3)0.3364 (3)0.6591 (2)0.0573 (7)
H50.94830.24490.66500.069*
C60.8695 (3)0.3772 (3)0.6207 (2)0.0449 (6)
H60.78110.31700.59970.054*
C70.9039 (2)0.5104 (2)0.61354 (18)0.0351 (5)
C80.6876 (2)0.5379 (3)0.5428 (2)0.0454 (6)
H8A0.66170.43770.50840.054*
H8B0.66990.58140.49550.054*
C90.6061 (2)0.5776 (3)0.6319 (2)0.0438 (6)
C100.5443 (3)0.4785 (3)0.6729 (2)0.0456 (6)
H100.55230.38350.64490.055*
C110.4705 (3)0.5178 (3)0.7550 (2)0.0521 (7)
C120.4583 (3)0.6547 (3)0.7952 (2)0.0537 (7)
C130.5222 (3)0.7534 (3)0.7543 (2)0.0553 (7)
C140.5963 (3)0.7155 (3)0.6720 (2)0.0508 (7)
H140.63990.78390.64350.061*
C150.4234 (4)0.2906 (4)0.7695 (3)0.0873 (12)
H15A0.38730.24140.69980.131*
H15B0.37830.24160.81120.131*
H15C0.51660.29510.77560.131*
C160.4304 (4)0.7401 (6)0.9699 (3)0.1083 (17)
H16A0.47380.67350.98050.162*
H16B0.36200.75261.01500.162*
H16C0.49440.82860.98350.162*
C170.5773 (7)0.9936 (4)0.7672 (4)0.119 (2)
H17A0.67050.99840.77360.179*
H17B0.56221.08230.80820.179*
H17C0.54780.97310.69730.179*
C181.1457 (3)0.8450 (3)0.6461 (2)0.0536 (7)
H18A1.14510.88260.59250.064*
H18B1.22770.81820.64830.064*
C191.1387 (3)0.9570 (3)0.7460 (2)0.0450 (6)
C201.0657 (4)1.0516 (3)0.7490 (2)0.0671 (9)
H201.02051.04660.68730.081*
C211.0563 (4)1.1546 (3)0.8403 (2)0.0677 (9)
H211.00481.21980.84030.081*
C221.1192 (3)1.1659 (3)0.9317 (2)0.0452 (6)
C231.1931 (3)1.0704 (3)0.9268 (2)0.0532 (7)
H231.23901.07520.98830.064*
C241.2033 (3)0.9667 (3)0.8350 (2)0.0533 (7)
H241.25580.90190.83420.064*
C251.1111 (3)1.2836 (3)1.0308 (2)0.0591 (8)
C260.9702 (4)1.3046 (5)1.0365 (3)0.0903 (13)
H26A0.96651.37791.09930.135*
H26B0.90851.21861.03340.135*
H26C0.94721.33060.98040.135*
C271.2089 (5)1.4190 (4)1.0328 (4)0.1013 (15)
H27A1.29761.40661.03150.152*
H27B1.20371.49471.09370.152*
H27C1.18681.44080.97450.152*
C281.1443 (4)1.2485 (5)1.1241 (3)0.0840 (11)
H28A1.23531.24351.12660.126*
H28B1.08701.15941.11960.126*
H28C1.13151.32041.18460.126*
O10.4055 (2)0.4294 (3)0.80195 (18)0.0717 (6)
O20.3740 (2)0.6898 (3)0.86948 (17)0.0741 (7)
O30.5058 (3)0.8868 (3)0.8002 (2)0.0870 (8)
O40.5832 (3)0.1696 (3)0.4946 (3)0.0969 (10)
H4A0.499 (2)0.144 (6)0.501 (4)0.145*
H4B0.623 (5)0.107 (5)0.501 (4)0.145*
U11U22U33U12U13U23
Br10.0556 (2)0.0784 (2)0.0980 (3)0.02072 (16)0.01227 (17)0.0592 (2)
N10.0361 (11)0.0451 (11)0.0394 (12)0.0158 (9)0.0067 (9)0.0176 (9)
N20.0412 (12)0.0386 (11)0.0437 (12)0.0106 (9)0.0121 (9)0.0156 (9)
C10.0482 (15)0.0452 (14)0.0470 (15)0.0210 (12)0.0139 (12)0.0208 (12)
C20.0364 (12)0.0393 (12)0.0342 (13)0.0132 (10)0.0078 (10)0.0117 (10)
C30.0378 (14)0.0634 (17)0.0469 (16)0.0149 (13)0.0004 (12)0.0169 (13)
C40.0558 (18)0.073 (2)0.067 (2)0.0308 (16)−0.0007 (15)0.0315 (16)
C50.067 (2)0.0494 (16)0.0648 (19)0.0205 (15)0.0037 (15)0.0284 (14)
C60.0463 (15)0.0391 (13)0.0477 (15)0.0082 (11)0.0045 (12)0.0148 (11)
C70.0348 (12)0.0396 (12)0.0330 (12)0.0147 (10)0.0060 (10)0.0119 (10)
C80.0360 (13)0.0599 (16)0.0433 (15)0.0190 (12)0.0027 (11)0.0173 (12)
C90.0329 (13)0.0567 (15)0.0432 (14)0.0176 (12)0.0004 (11)0.0155 (12)
C100.0366 (13)0.0535 (15)0.0483 (16)0.0120 (12)0.0020 (11)0.0195 (12)
C110.0363 (14)0.0673 (18)0.0546 (17)0.0098 (13)0.0039 (12)0.0260 (14)
C120.0355 (14)0.079 (2)0.0471 (16)0.0209 (14)0.0077 (12)0.0187 (14)
C130.0541 (17)0.0633 (18)0.0550 (17)0.0314 (15)0.0114 (14)0.0175 (14)
C140.0493 (16)0.0589 (17)0.0537 (17)0.0222 (13)0.0107 (13)0.0260 (13)
C150.091 (3)0.081 (3)0.099 (3)0.006 (2)0.019 (2)0.054 (2)
C160.078 (3)0.170 (5)0.054 (2)0.022 (3)0.013 (2)0.016 (3)
C170.195 (6)0.063 (2)0.112 (4)0.055 (3)0.059 (4)0.030 (2)
C180.0514 (16)0.0446 (15)0.0592 (18)0.0025 (12)0.0187 (14)0.0175 (13)
C190.0452 (14)0.0382 (13)0.0515 (16)0.0060 (11)0.0132 (12)0.0184 (11)
C200.097 (3)0.0610 (19)0.0488 (18)0.0340 (18)−0.0027 (17)0.0174 (14)
C210.097 (3)0.0613 (19)0.0550 (19)0.0438 (19)0.0010 (18)0.0179 (15)
C220.0462 (15)0.0448 (14)0.0458 (15)0.0110 (12)0.0085 (12)0.0176 (12)
C230.0498 (16)0.0567 (17)0.0518 (17)0.0147 (13)−0.0032 (13)0.0170 (13)
C240.0456 (15)0.0498 (15)0.0653 (19)0.0185 (13)0.0051 (14)0.0170 (14)
C250.0622 (19)0.0573 (17)0.0523 (18)0.0180 (15)0.0122 (15)0.0103 (14)
C260.091 (3)0.113 (3)0.072 (3)0.056 (3)0.024 (2)0.018 (2)
C270.127 (4)0.053 (2)0.093 (3)0.002 (2)0.024 (3)0.000 (2)
C280.087 (3)0.112 (3)0.0454 (19)0.032 (2)0.0076 (18)0.0146 (19)
O10.0604 (14)0.0848 (16)0.0758 (16)0.0089 (12)0.0203 (12)0.0416 (13)
O20.0492 (12)0.1158 (19)0.0554 (14)0.0316 (13)0.0177 (10)0.0202 (13)
O30.111 (2)0.0785 (16)0.0900 (19)0.0592 (16)0.0421 (16)0.0286 (14)
O40.0533 (14)0.0568 (14)0.174 (3)0.0082 (12)−0.0014 (18)0.0367 (17)
N1—C11.329 (3)C16—H16A0.9599
N1—C71.389 (3)C16—H16B0.9599
N1—C81.478 (3)C16—H16C0.9599
N2—C11.325 (3)C17—O31.407 (5)
N2—C21.391 (3)C17—H17A0.9599
N2—C181.481 (3)C17—H17B0.9599
C1—H10.9600C17—H17C0.9599
C2—C31.382 (4)C18—C191.507 (4)
C2—C71.393 (3)C18—H18A0.9600
C3—C41.380 (4)C18—H18B0.9600
C3—H30.9600C19—C201.370 (4)
C4—C51.394 (5)C19—C241.372 (4)
C4—H40.9600C20—C211.389 (4)
C5—C61.368 (4)C20—H200.9600
C5—H50.9600C21—C221.388 (4)
C6—C71.390 (3)C21—H210.9600
C6—H60.9600C22—C231.380 (4)
C8—C91.513 (4)C22—C251.532 (4)
C8—H8A0.9600C23—C241.399 (4)
C8—H8B0.9600C23—H230.9600
C9—C101.383 (4)C24—H240.9600
C9—C141.386 (4)C25—C271.526 (5)
C10—C111.390 (4)C25—C261.529 (5)
C10—H100.9600C25—C281.530 (5)
C11—O11.369 (3)C26—H26A0.9599
C11—C121.385 (4)C26—H26B0.9599
C12—O21.380 (3)C26—H26C0.9599
C12—C131.385 (4)C27—H27A0.9599
C13—O31.374 (4)C27—H27B0.9599
C13—C141.392 (4)C27—H27C0.9599
C14—H140.9600C28—H28A0.9599
C15—O11.422 (5)C28—H28B0.9599
C15—H15A0.9599C28—H28C0.9599
C15—H15B0.9599O4—H4A0.87 (2)
C15—H15C0.9599O4—H4B0.88 (5)
C16—O21.394 (5)
C1—N1—C7108.2 (2)H16A—C16—H16C109.5
C1—N1—C8125.0 (2)H16B—C16—H16C109.5
C7—N1—C8126.6 (2)O3—C17—H17A109.5
C1—N2—C2108.4 (2)O3—C17—H17B109.5
C1—N2—C18124.9 (2)H17A—C17—H17B109.5
C2—N2—C18126.6 (2)O3—C17—H17C109.5
N2—C1—N1110.5 (2)H17A—C17—H17C109.5
N2—C1—H1124.8H17B—C17—H17C109.5
N1—C1—H1124.8N2—C18—C19111.7 (2)
C3—C2—N2132.0 (2)N2—C18—H18A109.3
C3—C2—C7121.6 (2)C19—C18—H18A109.3
N2—C2—C7106.3 (2)N2—C18—H18B109.3
C4—C3—C2116.5 (3)C19—C18—H18B109.3
C4—C3—H3121.7H18A—C18—H18B107.9
C2—C3—H3121.7C20—C19—C24118.7 (3)
C3—C4—C5121.6 (3)C20—C19—C18119.6 (3)
C3—C4—H4119.2C24—C19—C18121.7 (3)
C5—C4—H4119.2C19—C20—C21120.7 (3)
C6—C5—C4122.1 (3)C19—C20—H20119.7
C6—C5—H5118.9C21—C20—H20119.7
C4—C5—H5118.9C22—C21—C20121.9 (3)
C5—C6—C7116.5 (3)C22—C21—H21119.1
C5—C6—H6121.8C20—C21—H21119.1
C7—C6—H6121.8C23—C22—C21116.4 (3)
N1—C7—C6131.8 (2)C23—C22—C25122.7 (3)
N1—C7—C2106.6 (2)C21—C22—C25120.8 (3)
C6—C7—C2121.6 (2)C22—C23—C24121.9 (3)
N1—C8—C9111.2 (2)C22—C23—H23119.1
N1—C8—H8A109.4C24—C23—H23119.1
C9—C8—H8A109.4C19—C24—C23120.4 (3)
N1—C8—H8B109.4C19—C24—H24119.8
C9—C8—H8B109.4C23—C24—H24119.8
H8A—C8—H8B108.0C27—C25—C26109.6 (3)
C10—C9—C14120.8 (2)C27—C25—C28110.0 (3)
C10—C9—C8120.6 (2)C26—C25—C28107.1 (3)
C14—C9—C8118.6 (2)C27—C25—C22108.2 (3)
C9—C10—C11119.5 (3)C26—C25—C22110.5 (3)
C9—C10—H10120.3C28—C25—C22111.5 (3)
C11—C10—H10120.3C25—C26—H26A109.5
O1—C11—C12114.9 (3)C25—C26—H26B109.5
O1—C11—C10124.7 (3)H26A—C26—H26B109.5
C12—C11—C10120.4 (3)C25—C26—H26C109.5
O2—C12—C11120.2 (3)H26A—C26—H26C109.5
O2—C12—C13120.0 (3)H26B—C26—H26C109.5
C11—C12—C13119.6 (3)C25—C27—H27A109.5
O3—C13—C12115.3 (3)C25—C27—H27B109.5
O3—C13—C14124.1 (3)H27A—C27—H27B109.5
C12—C13—C14120.6 (3)C25—C27—H27C109.5
C9—C14—C13119.1 (3)H27A—C27—H27C109.5
C9—C14—H14120.5H27B—C27—H27C109.5
C13—C14—H14120.5C25—C28—H28A109.5
O1—C15—H15A109.5C25—C28—H28B109.5
O1—C15—H15B109.5H28A—C28—H28B109.5
H15A—C15—H15B109.5C25—C28—H28C109.5
O1—C15—H15C109.5H28A—C28—H28C109.5
H15A—C15—H15C109.5H28B—C28—H28C109.5
H15B—C15—H15C109.5C11—O1—C15117.4 (3)
O2—C16—H16A109.5C12—O2—C16116.4 (3)
O2—C16—H16B109.5C13—O3—C17117.6 (3)
H16A—C16—H16B109.5H4A—O4—H4B110 (5)
O2—C16—H16C109.5
C2—N2—C1—N1−0.4 (3)O2—C12—C13—O36.4 (4)
C18—N2—C1—N1−177.7 (2)C11—C12—C13—O3−179.1 (3)
C7—N1—C1—N20.1 (3)O2—C12—C13—C14−173.2 (3)
C8—N1—C1—N2175.6 (2)C11—C12—C13—C141.4 (5)
C1—N2—C2—C3179.0 (3)C10—C9—C14—C13−0.4 (4)
C18—N2—C2—C3−3.8 (4)C8—C9—C14—C13−179.7 (3)
C1—N2—C2—C70.6 (3)O3—C13—C14—C9179.9 (3)
C18—N2—C2—C7177.8 (2)C12—C13—C14—C9−0.5 (4)
N2—C2—C3—C4−177.6 (3)C1—N2—C18—C1981.3 (3)
C7—C2—C3—C40.5 (4)C2—N2—C18—C19−95.5 (3)
C2—C3—C4—C5−0.3 (4)N2—C18—C19—C20−86.2 (3)
C3—C4—C5—C6−0.1 (5)N2—C18—C19—C2493.5 (3)
C4—C5—C6—C70.2 (4)C24—C19—C20—C21−0.5 (5)
C1—N1—C7—C6−178.2 (3)C18—C19—C20—C21179.1 (3)
C8—N1—C7—C66.3 (4)C19—C20—C21—C22−0.3 (6)
C1—N1—C7—C20.3 (3)C20—C21—C22—C230.8 (5)
C8—N1—C7—C2−175.2 (2)C20—C21—C22—C25177.9 (3)
C5—C6—C7—N1178.4 (3)C21—C22—C23—C24−0.6 (4)
C5—C6—C7—C20.0 (4)C25—C22—C23—C24−177.7 (3)
C3—C2—C7—N1−179.1 (2)C20—C19—C24—C230.7 (4)
N2—C2—C7—N1−0.5 (2)C18—C19—C24—C23−178.9 (3)
C3—C2—C7—C6−0.4 (4)C22—C23—C24—C19−0.1 (4)
N2—C2—C7—C6178.2 (2)C23—C22—C25—C2798.5 (4)
C1—N1—C8—C9−90.8 (3)C21—C22—C25—C27−78.4 (4)
C7—N1—C8—C984.0 (3)C23—C22—C25—C26−141.5 (3)
N1—C8—C9—C10−100.3 (3)C21—C22—C25—C2641.6 (4)
N1—C8—C9—C1478.9 (3)C23—C22—C25—C28−22.5 (4)
C14—C9—C10—C110.5 (4)C21—C22—C25—C28160.6 (3)
C8—C9—C10—C11179.7 (2)C12—C11—O1—C15−175.0 (3)
C9—C10—C11—O1−179.8 (3)C10—C11—O1—C155.2 (5)
C9—C10—C11—C120.3 (4)C11—C12—O2—C1692.8 (4)
O1—C11—C12—O2−6.6 (4)C13—C12—O2—C16−92.7 (4)
C10—C11—C12—O2173.3 (3)C12—C13—O3—C17175.0 (4)
O1—C11—C12—C13178.9 (3)C14—C13—O3—C17−5.5 (6)
C10—C11—C12—C13−1.2 (4)
D—H···AD—HH···AD···AD—H···A
O4—H4A···Br1i0.87 (3)2.54 (3)3.393 (3)169 (5)
O4—H4B···Br1ii0.88 (5)2.52 (5)3.399 (3)176 (5)
C1—H1···Br10.962.653.587 (3)165
C3—H3···O2iii0.962.573.294 (4)132
C6—H6···O40.962.383.305 (5)161
C10—H10···O40.962.593.463 (5)152
C14—H14···Br10.962.883.823 (3)167
C18—H18A···Br1iv0.962.823.718 (3)155
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O4—H4A⋯Br1i0.87 (3)2.54 (3)3.393 (3)169 (5)
O4—H4B⋯Br1ii0.88 (5)2.52 (5)3.399 (3)176 (5)
C1—H1⋯Br10.962.653.587 (3)165
C3—H3⋯O2iii0.962.573.294 (4)132
C6—H6⋯O40.962.383.305 (5)161
C10—H10⋯O40.962.593.463 (5)152
C14—H14⋯Br10.962.883.823 (3)167
C18—H18A⋯Br1iv0.962.823.718 (3)155

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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