Literature DB >> 21589366

Tris{2-[(2-amino-benzyl-idene)amino]-ethyl}amine.

Mariana Elizondo García, Sylvain Bernès, Nancy Pérez Rodríguez, Perla Elizondo Martínez.   

Abstract

The title Schiff base, C(27)H(33)N(7), is a tripodal amine displaying C(3) symmetry, with the central tertiary N atom lying on the threefold crystallographic axis. The N-CH(2)-CH(2)-N conformation of the pendant arms is gauche [torsion angle = 76.1 (3)°], which results in a claw-like mol-ecule, with the terminal aniline groups wrapped around the symmetry axis. The lone pair of the apical N atom is clearly oriented inwards towards the cavity, and should thus be chemically inactive. The amine NH(2) substituents lie in the plane of the benzene ring to which they are bonded. With such an arrangement, one amine H atom forms an S(6) motif through a weak N-H⋯N hydrogen bond with the imine N atom, while the other is engaged in an inter-molecular N-H⋯π contact involving the benzene ring of a neighbouring mol-ecule related by inversion. The benzene rings also participate in an intra-molecular C-H⋯π contact of similar strength. In the crystal structure, mol-ecules are separated by empty voids (ca 5% of the crystal volume), although the crystal seems to be unsolvated.

Entities:  

Year:  2010        PMID: 21589366      PMCID: PMC3011466          DOI: 10.1107/S1600536810043783

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For applications of polyamines as metal extracta­nts, see: Wenzel (2008 ▶); Bernier et al. (2009 ▶); Galbraith et al. (2006 ▶). For other applications, see: Zibaseresht & Hartshorn (2005 ▶); Mercs et al. (2008 ▶). For similar C 3 tripodal structures, see: Weibel et al. (2002 ▶); Işıklan et al. (2010 ▶); McKee et al. (2006 ▶); Glidewell et al. (2005 ▶). The software used for analysis of the empty voids in the crystal structure was SQUEEZE in PLATON (Spek, 2009 ▶).

Experimental

Crystal data

C27H33N7 M = 455.60 Trigonal, a = 13.1075 (18) Å c = 25.985 (6) Å V = 3866.3 (12) Å3 Z = 6 Mo Kα radiation μ = 0.07 mm−1 T = 300 K 0.40 × 0.40 × 0.18 mm

Data collection

Siemens P4 diffractometer 6668 measured reflections 1507 independent reflections 838 reflections with I > 2σ(I) R int = 0.033 2 standard reflections every 98 reflections intensity decay: 2%

Refinement

R[F 2 > 2σ(F 2)] = 0.058 wR(F 2) = 0.176 S = 1.81 1507 reflections 110 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.51 e Å−3 Δρmin = −0.21 e Å−3 Data collection: XSCANS (Siemens, 1996 ▶); cell refinement: XSCANS; data reduction: XSCANS; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810043783/bq2243sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810043783/bq2243Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C27H33N7Dx = 1.174 Mg m3
Mr = 455.60Melting point: 416 K
Trigonal, R3Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -R 3Cell parameters from 70 reflections
a = 13.1075 (18) Åθ = 4.8–12.3°
c = 25.985 (6) ŵ = 0.07 mm1
V = 3866.3 (12) Å3T = 300 K
Z = 6Prism, yellow
F(000) = 14640.40 × 0.40 × 0.18 mm
Siemens P4 diffractometerRint = 0.033
Radiation source: fine-focus sealed tubeθmax = 25.0°, θmin = 2.0°
graphiteh = −13→15
ω scansk = −15→15
6668 measured reflectionsl = −30→30
1507 independent reflections2 standard reflections every 98 reflections
838 reflections with I > 2σ(I) intensity decay: 2%
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.058H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.176w = 1/[σ2(Fo2) + (0.05P)2] where P = (Fo2 + 2Fc2)/3
S = 1.81(Δ/σ)max < 0.001
1507 reflectionsΔρmax = 0.51 e Å3
110 parametersΔρmin = −0.21 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
0 constraintsExtinction coefficient: 0.0057 (9)
Primary atom site location: structure-invariant direct methods
xyzUiso*/Ueq
N11.00001.00000.17108 (11)0.0773 (10)
C20.9753 (3)0.8840 (2)0.15415 (9)0.0952 (9)
H2A1.00680.89040.11980.114*
H2B0.89060.83220.15240.114*
C31.0266 (3)0.8305 (3)0.18909 (10)0.0990 (10)
H3A1.02870.76630.17140.119*
H3B1.10690.88920.19780.119*
N40.95737 (19)0.78635 (19)0.23590 (8)0.0821 (7)
C51.0077 (2)0.8295 (2)0.27831 (10)0.0741 (7)
H5A1.08620.88910.27760.089*
C60.9507 (2)0.79175 (19)0.32820 (9)0.0680 (7)
C71.0149 (2)0.8459 (2)0.37218 (10)0.0825 (8)
H7A1.09330.90450.36880.099*
C80.9669 (3)0.8163 (3)0.42032 (11)0.0985 (9)
H8A1.01200.85400.44920.118*
C90.8505 (3)0.7297 (3)0.42536 (10)0.0915 (9)
H9A0.81650.70960.45790.110*
C100.7853 (3)0.6738 (2)0.38354 (10)0.0820 (8)
H10A0.70730.61470.38790.098*
C110.8319 (2)0.7026 (2)0.33419 (9)0.0696 (7)
N120.7651 (2)0.6450 (2)0.29267 (9)0.0958 (8)
H12A0.792 (3)0.670 (3)0.2599 (10)0.115*
H12B0.692 (3)0.597 (3)0.2993 (11)0.115*
U11U22U33U12U13U23
N10.0863 (15)0.0863 (15)0.0592 (18)0.0432 (8)0.0000.000
C20.116 (2)0.101 (2)0.0686 (14)0.0545 (18)0.0064 (14)−0.0093 (14)
C30.118 (2)0.098 (2)0.0928 (18)0.0631 (19)0.0324 (16)0.0059 (15)
N40.0836 (15)0.0817 (14)0.0848 (14)0.0442 (12)0.0142 (12)0.0027 (11)
C50.0668 (15)0.0620 (14)0.0941 (17)0.0327 (12)0.0095 (13)0.0063 (13)
C60.0648 (15)0.0560 (13)0.0840 (16)0.0307 (12)0.0009 (12)0.0046 (11)
C70.0821 (17)0.0684 (16)0.0913 (18)0.0333 (14)−0.0097 (14)0.0050 (13)
C80.121 (3)0.094 (2)0.0859 (18)0.058 (2)−0.0204 (18)−0.0012 (16)
C90.112 (2)0.094 (2)0.0842 (18)0.063 (2)0.0122 (16)0.0217 (16)
C100.0820 (17)0.0778 (17)0.0947 (18)0.0463 (14)0.0110 (15)0.0148 (14)
C110.0679 (15)0.0647 (14)0.0832 (15)0.0384 (13)0.0025 (13)−0.0001 (13)
N120.0638 (14)0.1025 (18)0.1008 (16)0.0263 (13)0.0001 (13)−0.0157 (14)
N1—C21.455 (3)C6—C111.413 (3)
N1—C2i1.455 (3)C7—C81.366 (4)
N1—C2ii1.455 (3)C7—H7A0.9300
C2—C31.498 (4)C8—C91.379 (4)
C2—H2A0.9700C8—H8A0.9300
C2—H2B0.9700C9—C101.350 (4)
C3—N41.454 (3)C9—H9A0.9300
C3—H3A0.9700C10—C111.389 (3)
C3—H3B0.9700C10—H10A0.9300
N4—C51.264 (3)C11—N121.356 (3)
C5—C61.454 (3)N12—H12A0.92 (3)
C5—H5A0.9300N12—H12B0.86 (3)
C6—C71.386 (3)
C2—N1—C2i111.28 (14)C7—C6—C5119.0 (2)
C2—N1—C2ii111.28 (14)C11—C6—C5123.1 (2)
C2i—N1—C2ii111.28 (14)C8—C7—C6122.3 (3)
N1—C2—C3112.9 (2)C8—C7—H7A118.8
N1—C2—H2A109.0C6—C7—H7A118.8
C3—C2—H2A109.0C7—C8—C9118.9 (3)
N1—C2—H2B109.0C7—C8—H8A120.5
C3—C2—H2B109.0C9—C8—H8A120.5
H2A—C2—H2B107.8C10—C9—C8120.7 (3)
N4—C3—C2110.9 (2)C10—C9—H9A119.7
N4—C3—H3A109.5C8—C9—H9A119.7
C2—C3—H3A109.5C9—C10—C11121.5 (3)
N4—C3—H3B109.5C9—C10—H10A119.2
C2—C3—H3B109.5C11—C10—H10A119.2
H3A—C3—H3B108.1N12—C11—C10120.6 (2)
C5—N4—C3118.0 (2)N12—C11—C6120.7 (2)
N4—C5—C6124.1 (2)C10—C11—C6118.7 (2)
N4—C5—H5A117.9C11—N12—H12A120.7 (19)
C6—C5—H5A117.9C11—N12—H12B115 (2)
C7—C6—C11117.9 (2)H12A—N12—H12B123 (3)
C2i—N1—C2—C383.1 (3)C6—C7—C8—C9−0.1 (4)
C2ii—N1—C2—C3−152.1 (3)C7—C8—C9—C100.9 (4)
N1—C2—C3—N476.1 (3)C8—C9—C10—C11−1.1 (4)
C2—C3—N4—C5−119.7 (3)C9—C10—C11—N12179.7 (2)
C3—N4—C5—C6−178.2 (2)C9—C10—C11—C60.6 (3)
N4—C5—C6—C7−179.8 (2)C7—C6—C11—N12−178.9 (2)
N4—C5—C6—C11−0.3 (4)C5—C6—C11—N121.6 (3)
C11—C6—C7—C8−0.3 (4)C7—C6—C11—C100.1 (3)
C5—C6—C7—C8179.1 (2)C5—C6—C11—C10−179.3 (2)
D—H···AD—HH···AD···AD—H···A
N12—H12A···N40.92 (3)2.02 (3)2.700 (3)129 (2)
N12—H12B···Cgiii0.86 (3)2.70 (3)3.430 (2)143 (3)
C7—H7A···Cgi0.932.713.494 (3)143
Table 1

Hydrogen-bond geometry (Å, °)

Cg is the centroid of the benzene ring.

D—H⋯AD—HH⋯ADAD—H⋯A
N12—H12A⋯N40.92 (3)2.02 (3)2.700 (3)129 (2)
N12—H12BCgi0.86 (3)2.70 (3)3.430 (2)143 (3)
C7—H7ACgii0.932.713.494 (3)143

Symmetry codes: (i) ; (ii) .

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