Literature DB >> 21589308

[2-Hydroxy-N'-(4-oxo-4-phenyl-butan-2-yl-idene)benzohydrazidato(2-)]pyridine-copper(II).

Shu-Ping Zhang1, Ying Wei, Si-Chang Shao.   

Abstract

The mononuclear title complex, [Cu(C(17)H(14)N(2)O(3))(C(5)H(5)N)], was synthesized by the reaction of CuCl(2)·2H(2)O with N-(4-oxo-4-phenyl-butan-2-yl-idene)benzohydrazide (H(2)L). The central Cu(II) atom exhibits a distorted square-planar coordination geometry, defined by two O atoms, one N atom from the ligand and one pyridine N atom with Cu-N distances of 1.874 (4) and 1.963 (4) Å, while the Cu-O distances are 1.857 (3) and 1.890 (3) Å. An intra-molecular O-H⋯N inter-action occurs.

Entities:  

Year:  2010        PMID: 21589308      PMCID: PMC3011487          DOI: 10.1107/S1600536810047719

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological properties of Schiff basemetal complexes, see: Cozzi (2004 ▶). For metallobiomolecules, see: Singh et al. (2007 ▶). For metal ions bonded to biologically active compounds, see: Canpolat & Kaya (2004 ▶); Yildiz et al. (2004 ▶). For a related structure, see: Shen et al. (1997 ▶).

Experimental

Crystal data

[Cu(C17H14N2O3)(C5H5N)] M = 436.94 Orthorhombic, a = 7.7096 (8) Å b = 22.906 (2) Å c = 20.983 (2) Å V = 3705.6 (7) Å3 Z = 8 Mo Kα radiation μ = 1.21 mm−1 T = 298 K 0.28 × 0.20 × 0.20 mm

Data collection

Bruker SMART APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.728, T max = 0.794 13526 measured reflections 4034 independent reflections 3340 reflections with I > 2σ(I) R int = 0.050

Refinement

R[F 2 > 2σ(F 2)] = 0.057 wR(F 2) = 0.131 S = 1.08 4034 reflections 252 parameters H-atom parameters constrained Δρmax = 0.45 e Å−3 Δρmin = −0.56 e Å−3 Absolute structure: Flack (1983 ▶), 1761 Friedel pairs Flack parameter: 0.08 (3) Data collection: APEX2 (Bruker, 2003 ▶); cell refinement: SAINT (Bruker, 2003 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810047719/bx2325sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810047719/bx2325Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu(C17H14N2O3)(C5H5N)]F(000) = 1800
Mr = 436.94Dx = 1.566 Mg m3
Orthorhombic, C2221Mo Kα radiation, λ = 0.71073 Å
Hall symbol: C 2c 2Cell parameters from 3542 reflections
a = 7.7096 (8) Åθ = 2.1–23.1°
b = 22.906 (2) ŵ = 1.21 mm1
c = 20.983 (2) ÅT = 298 K
V = 3705.6 (7) Å3Block, dark green
Z = 80.28 × 0.20 × 0.20 mm
Bruker SMART APEXII CCD diffractometer4034 independent reflections
Radiation source: fine-focus sealed tube3340 reflections with I > 2σ(I)
graphiteRint = 0.050
phi and ω scansθmax = 27.0°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −9→9
Tmin = 0.728, Tmax = 0.794k = −29→27
13526 measured reflectionsl = −26→26
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.057H-atom parameters constrained
wR(F2) = 0.131w = 1/[σ2(Fo2) + (0.0614P)2 + 1.8583P] where P = (Fo2 + 2Fc2)/3
S = 1.08(Δ/σ)max = 0.003
4034 reflectionsΔρmax = 0.45 e Å3
252 parametersΔρmin = −0.56 e Å3
0 restraintsAbsolute structure: Flack (1983), 1761 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.08 (3)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cu10.26164 (7)0.56424 (2)0.75389 (2)0.03955 (17)
C10.4395 (6)0.4324 (2)0.8613 (2)0.0396 (11)
C20.5248 (7)0.4551 (2)0.9121 (2)0.0496 (13)
H20.53220.49550.91650.059*
C30.5994 (7)0.4205 (3)0.9567 (2)0.0558 (14)
H30.65690.43700.99130.067*
C40.5895 (8)0.3611 (3)0.9504 (3)0.0653 (17)
H40.64010.33690.98070.078*
C50.5071 (9)0.3384 (2)0.9008 (2)0.0534 (12)
H50.50210.29800.89640.064*
C60.4294 (7)0.3728 (2)0.8558 (2)0.0440 (12)
C70.3627 (6)0.4715 (2)0.8143 (2)0.0386 (11)
C80.0179 (5)0.60424 (13)0.58645 (12)0.0411 (11)
C90.0827 (5)0.66043 (14)0.57885 (14)0.0524 (13)
H9A0.16310.67510.60780.063*
C100.0275 (5)0.69465 (12)0.52805 (16)0.0589 (15)
H10A0.07090.73220.52300.071*
C11−0.0925 (5)0.67268 (15)0.48484 (14)0.0617 (16)
H11A−0.12950.69560.45090.074*
C12−0.1574 (4)0.61649 (16)0.49245 (15)0.0614 (15)
H12A−0.23770.60180.46350.074*
C13−0.1022 (5)0.58227 (12)0.54325 (16)0.0589 (15)
H13A−0.14560.54470.54830.071*
C140.0822 (6)0.5682 (2)0.6383 (2)0.0423 (11)
C150.0672 (6)0.5104 (2)0.6359 (2)0.0435 (12)
H150.00740.49540.60110.052*
C160.1308 (6)0.4698 (2)0.6795 (2)0.0391 (11)
C170.1033 (7)0.4076 (2)0.6673 (2)0.0476 (12)
H17A0.03840.39080.70170.071*
H17B0.21340.38830.66380.071*
H17C0.03990.40290.62820.071*
C180.3924 (7)0.6464 (2)0.8448 (2)0.0532 (14)
H180.43660.61280.86360.064*
C190.4202 (9)0.6974 (3)0.8736 (3)0.0635 (17)
H190.48470.69890.91100.076*
C200.3560 (11)0.7459 (3)0.8488 (3)0.080 (2)
H200.37520.78180.86820.096*
C210.2630 (12)0.7419 (2)0.7953 (3)0.085 (2)
H210.21390.77500.77710.102*
C220.2413 (9)0.6887 (2)0.7680 (2)0.0658 (17)
H220.17690.68620.73070.079*
N10.2780 (5)0.44657 (14)0.76881 (16)0.0376 (8)
N20.2134 (4)0.48748 (16)0.72866 (15)0.0353 (8)
N30.3066 (5)0.64115 (17)0.79176 (17)0.0400 (9)
O10.3475 (6)0.34649 (15)0.80904 (17)0.0602 (10)
H10.30700.37100.78480.090*
O20.3808 (5)0.52533 (13)0.82017 (15)0.0428 (8)
O30.1558 (5)0.59686 (14)0.68281 (15)0.0499 (9)
U11U22U33U12U13U23
Cu10.0412 (3)0.0412 (3)0.0363 (3)0.0042 (3)−0.0104 (3)−0.0039 (2)
C10.034 (2)0.045 (3)0.039 (2)0.004 (2)0.0083 (18)0.008 (2)
C20.058 (4)0.050 (3)0.041 (3)0.005 (3)0.000 (2)−0.002 (2)
C30.059 (4)0.066 (4)0.043 (3)0.008 (3)−0.006 (2)0.007 (2)
C40.056 (4)0.085 (5)0.055 (3)0.014 (4)0.005 (3)0.027 (3)
C50.058 (3)0.050 (3)0.052 (3)0.007 (3)0.010 (3)0.011 (2)
C60.050 (3)0.041 (3)0.041 (3)0.006 (2)0.014 (2)−0.003 (2)
C70.030 (2)0.050 (3)0.036 (2)0.002 (2)−0.004 (2)−0.004 (2)
C80.035 (3)0.058 (3)0.031 (2)0.005 (3)−0.005 (2)−0.008 (2)
C90.060 (3)0.056 (3)0.041 (3)0.003 (3)−0.004 (2)−0.005 (2)
C100.064 (4)0.061 (3)0.052 (3)0.005 (3)−0.001 (3)0.003 (3)
C110.064 (4)0.082 (5)0.039 (3)0.018 (3)−0.002 (3)−0.002 (3)
C120.058 (3)0.075 (4)0.051 (3)0.007 (3)−0.018 (3)0.007 (3)
C130.049 (3)0.074 (4)0.054 (3)0.006 (3)−0.021 (3)0.003 (3)
C140.034 (2)0.056 (3)0.036 (2)0.012 (3)−0.0044 (19)−0.003 (2)
C150.040 (3)0.057 (3)0.034 (2)−0.002 (2)−0.008 (2)−0.013 (2)
C160.032 (2)0.042 (3)0.043 (2)−0.002 (2)0.007 (2)−0.009 (2)
C170.050 (3)0.047 (3)0.046 (3)−0.004 (3)−0.011 (2)−0.008 (2)
C180.061 (4)0.051 (3)0.048 (3)0.003 (3)−0.019 (3)−0.007 (2)
C190.084 (4)0.049 (3)0.057 (3)0.007 (3)−0.026 (3)−0.006 (3)
C200.124 (7)0.044 (3)0.072 (4)0.005 (4)−0.018 (4)−0.013 (3)
C210.133 (7)0.045 (3)0.078 (4)0.028 (4)−0.036 (5)−0.012 (3)
C220.097 (5)0.053 (3)0.048 (3)0.014 (4)−0.028 (4)0.002 (2)
N10.038 (2)0.0335 (19)0.0408 (17)0.0034 (16)0.0008 (17)0.0041 (14)
N20.0283 (19)0.045 (2)0.0327 (16)0.0030 (16)0.0005 (15)−0.0042 (15)
N30.043 (2)0.042 (2)0.0355 (18)0.0042 (18)−0.0054 (16)0.0018 (17)
O10.081 (3)0.040 (2)0.059 (2)0.003 (2)−0.015 (2)−0.0024 (18)
O20.051 (2)0.0356 (19)0.0417 (17)0.0018 (15)−0.0138 (16)−0.0037 (14)
O30.064 (2)0.044 (2)0.0417 (17)0.0059 (18)−0.0178 (16)−0.0048 (16)
Cu1—O31.857 (3)C11—H11A0.9300
Cu1—N21.874 (4)C12—C131.3900
Cu1—O21.890 (3)C12—H12A0.9300
Cu1—N31.963 (4)C13—H13A0.9300
C1—C21.357 (7)C14—O31.276 (5)
C1—C61.373 (7)C14—C151.328 (7)
C1—C71.457 (7)C15—C161.394 (7)
C2—C31.355 (7)C15—H150.9300
C2—H20.9300C16—N21.278 (6)
C3—C41.369 (9)C16—C171.462 (7)
C3—H30.9300C17—H17A0.9600
C4—C51.327 (8)C17—H17B0.9600
C4—H40.9300C17—H17C0.9600
C5—C61.367 (7)C18—N31.300 (6)
C5—H50.9300C18—C191.332 (8)
C6—O11.314 (6)C18—H180.9300
C7—O21.247 (5)C19—C201.323 (8)
C7—N11.291 (6)C19—H190.9300
C8—C91.3900C20—C211.335 (9)
C8—C131.3900C20—H200.9300
C8—C141.453 (5)C21—C221.356 (7)
C9—C101.3900C21—H210.9300
C9—H9A0.9300C22—N31.300 (6)
C10—C111.3900C22—H220.9300
C10—H10A0.9300N1—N21.355 (5)
C11—C121.3900O1—H10.8200
O3—Cu1—N293.64 (15)C12—C13—H13A120.0
O3—Cu1—O2173.85 (15)C8—C13—H13A120.0
N2—Cu1—O282.05 (14)O3—C14—C15125.4 (4)
O3—Cu1—N392.39 (15)O3—C14—C8114.0 (4)
N2—Cu1—N3172.50 (15)C15—C14—C8120.6 (4)
O2—Cu1—N392.27 (14)C14—C15—C16127.5 (4)
C2—C1—C6118.3 (5)C14—C15—H15116.2
C2—C1—C7119.5 (5)C16—C15—H15116.2
C6—C1—C7122.1 (5)N2—C16—C15119.6 (4)
C3—C2—C1121.6 (5)N2—C16—C17121.5 (4)
C3—C2—H2119.2C15—C16—C17118.9 (4)
C1—C2—H2119.2C16—C17—H17A109.5
C2—C3—C4119.4 (5)C16—C17—H17B109.5
C2—C3—H3120.3H17A—C17—H17B109.5
C4—C3—H3120.3C16—C17—H17C109.5
C5—C4—C3119.5 (5)H17A—C17—H17C109.5
C5—C4—H4120.2H17B—C17—H17C109.5
C3—C4—H4120.2N3—C18—C19123.4 (5)
C4—C5—C6121.7 (5)N3—C18—H18118.3
C4—C5—H5119.2C19—C18—H18118.3
C6—C5—H5119.2C20—C19—C18119.9 (6)
O1—C6—C5117.5 (5)C20—C19—H19120.0
O1—C6—C1123.1 (5)C18—C19—H19120.0
C5—C6—C1119.4 (5)C19—C20—C21118.3 (6)
O2—C7—N1124.5 (4)C19—C20—H20120.9
O2—C7—C1119.7 (4)C21—C20—H20120.9
N1—C7—C1115.7 (4)C20—C21—C22118.9 (6)
C9—C8—C13120.0C20—C21—H21120.6
C9—C8—C14119.3 (3)C22—C21—H21120.6
C13—C8—C14120.6 (3)N3—C22—C21122.9 (5)
C10—C9—C8120.0N3—C22—H22118.5
C10—C9—H9A120.0C21—C22—H22118.5
C8—C9—H9A120.0C7—N1—N2109.9 (4)
C9—C10—C11120.0C16—N2—N1117.8 (4)
C9—C10—H10A120.0C16—N2—Cu1128.6 (3)
C11—C10—H10A120.0N1—N2—Cu1113.6 (3)
C12—C11—C10120.0C22—N3—C18116.6 (4)
C12—C11—H11A120.0C22—N3—Cu1122.0 (3)
C10—C11—H11A120.0C18—N3—Cu1121.2 (4)
C11—C12—C13120.0C6—O1—H1109.5
C11—C12—H12A120.0C7—O2—Cu1109.9 (3)
C13—C12—H12A120.0C14—O3—Cu1125.2 (3)
C12—C13—C8120.0
C6—C1—C2—C30.2 (8)N3—C18—C19—C201.4 (10)
C7—C1—C2—C3−179.5 (5)C18—C19—C20—C210.5 (12)
C1—C2—C3—C40.2 (9)C19—C20—C21—C22−1.4 (13)
C2—C3—C4—C50.1 (9)C20—C21—C22—N30.3 (13)
C3—C4—C5—C6−0.9 (10)O2—C7—N1—N20.3 (6)
C4—C5—C6—O1−178.5 (5)C1—C7—N1—N2180.0 (3)
C4—C5—C6—C11.3 (9)C15—C16—N2—N1−177.9 (4)
C2—C1—C6—O1178.9 (5)C17—C16—N2—N11.1 (6)
C7—C1—C6—O1−1.5 (8)C15—C16—N2—Cu11.6 (6)
C2—C1—C6—C5−1.0 (7)C17—C16—N2—Cu1−179.4 (4)
C7—C1—C6—C5178.7 (5)C7—N1—N2—C16177.6 (4)
C2—C1—C7—O22.3 (7)C7—N1—N2—Cu1−1.9 (4)
C6—C1—C7—O2−177.4 (5)O3—Cu1—N2—C16−1.8 (4)
C2—C1—C7—N1−177.4 (4)O2—Cu1—N2—C16−177.4 (4)
C6—C1—C7—N13.0 (7)O3—Cu1—N2—N1177.7 (3)
C13—C8—C9—C100.0O2—Cu1—N2—N12.1 (3)
C14—C8—C9—C10177.5 (4)C21—C22—N3—C181.5 (10)
C8—C9—C10—C110.0C21—C22—N3—Cu1176.4 (6)
C9—C10—C11—C120.0C19—C18—N3—C22−2.4 (8)
C10—C11—C12—C130.0C19—C18—N3—Cu1−177.3 (5)
C11—C12—C13—C80.0O2—Cu1—N3—C22−175.0 (5)
C9—C8—C13—C120.0O3—Cu1—N3—C18−176.3 (4)
C14—C8—C13—C12−177.4 (4)O2—Cu1—N3—C18−0.3 (4)
C9—C8—C14—O319.2 (5)N1—C7—O2—Cu11.4 (6)
C13—C8—C14—O3−163.4 (3)C1—C7—O2—Cu1−178.3 (3)
C9—C8—C14—C15−158.8 (4)N2—Cu1—O2—C7−1.8 (3)
C13—C8—C14—C1518.7 (6)N3—Cu1—O2—C7173.3 (4)
O3—C14—C15—C16−1.8 (9)C15—C14—O3—Cu11.0 (7)
C8—C14—C15—C16175.9 (4)C8—C14—O3—Cu1−176.8 (3)
C14—C15—C16—N20.4 (8)N2—Cu1—O3—C140.5 (4)
C14—C15—C16—C17−178.7 (5)N3—Cu1—O3—C14−175.0 (4)
D—H···AD—HH···AD···AD—H···A
O1—H1···N10.821.782.500 (5)146
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯N10.821.782.500 (5)146
  3 in total

1.  Metal-Salen Schiff base complexes in catalysis: practical aspects.

Authors:  Pier Giorgio Cozzi
Journal:  Chem Soc Rev       Date:  2004-08-13       Impact factor: 54.564

2.  Synthesis and characterization of cobalt(II), nickel(II), copper(II) and zinc(II) complexes with Schiff base derived from 4-amino-3-mercapto-6-methyl-5-oxo-1,2,4-triazine.

Authors:  Kiran Singh; Manjeet Singh Barwa; Parikshit Tyagi
Journal:  Eur J Med Chem       Date:  2007-01-16       Impact factor: 6.514

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  3 in total
  7 in total

1.  N'-[(2-Methoxynaphthalen-1-yl)methyl-idene]-4-methyl-benzohydrazide.

Authors:  Xu-Feng Meng; Dong-Yue Wang; Jing-Jun Ma
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-10-29

2.  N'-(5-Bromo-2-hy-droxy-benzyl-idene)-4-nitro-benzohydrazide methanol monosolvate.

Authors:  Wei-Hua Liu; Shuang-Ju Song; Jing-Jun Ma
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-07-30

3.  2-Fluoro-N'-[(2-hydroxynaphthalen-1-yl)methylidene]benzohydrazide.

Authors:  Dong-Yue Wang; Xu-Feng Meng; Jing-Jun Ma
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-12-03

4.  N'-(2-Hy-droxy-4-meth-oxy-benzyl-idene)-4-methyl-benzohydrazide.

Authors:  Yan Zhang; Min Liu; Jing-Jun Ma
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-02-10

5.  (E)-N'-(4-Hy-droxy-benzyl-idene)-3-nitro-benzohydrazide.

Authors:  Xu-Feng Meng; Dong-Yue Wang; Jing-Jun Ma
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-12-03

6.  N'-(3,5-Dibromo-2-hy-droxy-benzyl-idene)-4-nitro-benzohydrazide methanol monosolvate.

Authors:  Xin Zhou; Shu-Tao Gao; Jing-Jun Ma
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-08-11

7.  N'-(3-Hy-droxy-benzyl-idene)-4-methyl-benzohydrazide.

Authors:  Ji-Lai Liu; Ming-Hui Sun; Jing-Jun Ma
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-05-19
  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.