Literature DB >> 21589272

Diaqua-bis-(3-nitro-benzoato-κO)bis-[1H-5-(3-pyrid-yl)-3-(4-pyrid-yl)-1H-1,2,4-triazole-κN]cobalt(II) dihydrate.

Yun-Liang Zhang1, Ti-Lou Liu, Shuang-Jiao Sun, Jie-Hong Li, Shi-Qing Wu.   

Abstract

In the centrosymmetric title compound, [Co(C(7)H(4)NO(4))(2)(C(12)H(9)N(5))(2)(H(2)O)(2)]·2H(2)O, the Co(II) atom, located on an inversion center, is coordinated by two N atoms [Co-N = 2.155 (3) Å] and four O atoms [Co-O = 2.099 (2)-2.117 (3) Å] in a distorted octa-hedral geometry. Inter-molecular N-H⋯O, O-H⋯N and O-H⋯O hydrogen bonds link the components into a three-dimensional supramolecular framework.

Entities:  

Year:  2010        PMID: 21589272      PMCID: PMC3011517          DOI: 10.1107/S1600536810046374

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to triazole-containing compounds, see: Huang et al. (2010a ▶); Klingele & Brooker (2003 ▶); Liu & Zhang (2009 ▶). For related structures, see: Xie et al. (2009 ▶); Du et al. (2007 ▶); Huang et al. (2010b ▶); Dong (2009 ▶).

Experimental

Crystal data

[Co(C7H4NO4)2(C12H9N5)2(H2O)2]·2H2O M = 909.70 Triclinic, a = 8.7080 (17) Å b = 9.850 (2) Å c = 12.488 (3) Å α = 81.97 (3)° β = 85.74 (3)° γ = 71.36 (3)° V = 1004.5 (4) Å3 Z = 1 Mo Kα radiation μ = 0.51 mm−1 T = 293 K 0.40 × 0.20 × 0.12 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.835, T max = 0.945 5815 measured reflections 3518 independent reflections 2642 reflections with I > 2σ(I) R int = 0.054

Refinement

R[F 2 > 2σ(F 2)] = 0.063 wR(F 2) = 0.146 S = 1.03 3518 reflections 306 parameters 7 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.43 e Å−3 Δρmin = −0.68 e Å−3 Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT (Bruker, 1998 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810046374/bg2368sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810046374/bg2368Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Co(C7H4NO4)2(C12H9N5)2(H2O)2]·2H2OZ = 1
Mr = 909.70F(000) = 469
Triclinic, P1Dx = 1.504 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.7080 (17) ÅCell parameters from 2567 reflections
b = 9.850 (2) Åθ = 1.5–25.0°
c = 12.488 (3) ŵ = 0.51 mm1
α = 81.97 (3)°T = 293 K
β = 85.74 (3)°Block, red
γ = 71.36 (3)°0.40 × 0.20 × 0.12 mm
V = 1004.5 (4) Å3
Bruker SMART CCD area-detector diffractometer3518 independent reflections
Radiation source: fine-focus sealed tube2642 reflections with I > 2σ(I)
graphiteRint = 0.054
phi and ω scansθmax = 25.0°, θmin = 3.0°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −10→10
Tmin = 0.835, Tmax = 0.945k = −11→11
5815 measured reflectionsl = −14→12
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.063Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.146H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.0646P)2 + 0.2P] where P = (Fo2 + 2Fc2)/3
3518 reflections(Δ/σ)max < 0.001
306 parametersΔρmax = 0.43 e Å3
7 restraintsΔρmin = −0.68 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Co11.00000.50000.50000.0338 (2)
C10.8882 (5)0.5642 (5)0.2676 (3)0.0402 (10)
C20.8606 (4)0.5027 (4)0.1685 (3)0.0381 (9)
C30.9466 (5)0.3630 (5)0.1493 (3)0.0559 (11)
H3A1.02240.30420.19850.067*
C40.9203 (6)0.3103 (5)0.0571 (4)0.0649 (13)
H4A0.98030.21710.04400.078*
C50.8061 (6)0.3954 (5)−0.0147 (3)0.0567 (12)
H50.78770.3608−0.07650.068*
C60.7193 (5)0.5333 (5)0.0068 (3)0.0429 (10)
C70.7445 (4)0.5889 (4)0.0965 (3)0.0397 (9)
H7A0.68490.68260.10870.048*
C80.7649 (4)0.3339 (4)0.4794 (3)0.0364 (9)
H8A0.83210.30940.41900.044*
C90.6321 (4)0.2837 (4)0.4974 (3)0.0328 (8)
C100.5367 (4)0.3156 (4)0.5896 (3)0.0382 (9)
H10A0.44820.28220.60560.046*
C110.5751 (4)0.3979 (4)0.6575 (3)0.0426 (10)
H11A0.51200.42140.71970.051*
C120.7069 (4)0.4449 (4)0.6328 (3)0.0372 (9)
H12A0.73190.49980.67970.045*
C130.6008 (4)0.1986 (4)0.4186 (3)0.0352 (9)
C140.4831 (4)0.0989 (4)0.3271 (3)0.0361 (9)
C150.3665 (4)0.0439 (4)0.2817 (3)0.0371 (9)
C160.2248 (4)0.0407 (4)0.3380 (3)0.0424 (10)
H16A0.20230.07150.40620.051*
C170.1174 (5)−0.0086 (5)0.2919 (3)0.0524 (11)
H17A0.0236−0.01140.33160.063*
C180.2767 (5)−0.0503 (5)0.1408 (3)0.0558 (12)
H18A0.2958−0.08130.07260.067*
C190.3924 (5)−0.0047 (5)0.1808 (3)0.0483 (11)
H19A0.4871−0.00630.14050.058*
N10.8013 (3)0.4154 (3)0.5443 (2)0.0338 (7)
N20.4570 (3)0.1725 (3)0.4117 (2)0.0357 (7)
N30.7120 (3)0.1453 (4)0.3446 (2)0.0440 (8)
N40.6339 (4)0.0816 (4)0.2875 (3)0.0431 (8)
N50.1390 (4)−0.0527 (4)0.1940 (3)0.0526 (9)
N60.5966 (5)0.6266 (5)−0.0687 (3)0.0576 (10)
O10.9798 (3)0.4763 (3)0.33767 (19)0.0411 (7)
O20.8182 (4)0.6953 (3)0.2740 (2)0.0514 (7)
O30.5106 (4)0.7427 (4)−0.0446 (3)0.0811 (11)
O40.5802 (4)0.5808 (5)−0.1515 (3)0.0949 (13)
O51.1510 (3)0.2825 (3)0.5207 (2)0.0410 (7)
O60.1644 (3)0.0713 (3)0.8675 (2)0.0491 (7)
H5A1.237 (3)0.253 (4)0.484 (3)0.062 (14)*
H40.687 (4)0.042 (4)0.234 (2)0.046 (11)*
H6A0.073 (4)0.061 (5)0.861 (4)0.098 (19)*
H5B1.177 (6)0.285 (7)0.586 (2)0.13 (3)*
H6B0.164 (5)0.155 (3)0.839 (4)0.084 (18)*
U11U22U33U12U13U23
Co10.0306 (4)0.0402 (5)0.0342 (4)−0.0127 (3)0.0013 (3)−0.0139 (3)
C10.046 (2)0.054 (3)0.030 (2)−0.027 (2)0.0032 (18)−0.009 (2)
C20.041 (2)0.044 (3)0.0316 (19)−0.016 (2)0.0003 (17)−0.0089 (18)
C30.062 (3)0.055 (3)0.045 (2)−0.009 (3)−0.011 (2)−0.009 (2)
C40.079 (3)0.048 (3)0.063 (3)−0.004 (3)−0.002 (3)−0.030 (2)
C50.070 (3)0.061 (3)0.043 (2)−0.018 (3)−0.005 (2)−0.020 (2)
C60.049 (2)0.052 (3)0.032 (2)−0.020 (2)−0.0007 (18)−0.0097 (19)
C70.044 (2)0.041 (3)0.037 (2)−0.015 (2)0.0036 (18)−0.0104 (18)
C80.0296 (18)0.042 (3)0.037 (2)−0.0077 (18)0.0020 (16)−0.0117 (18)
C90.0306 (18)0.030 (2)0.0369 (19)−0.0078 (17)−0.0032 (16)−0.0058 (16)
C100.0325 (19)0.045 (3)0.040 (2)−0.0159 (19)0.0000 (16)−0.0075 (18)
C110.037 (2)0.054 (3)0.039 (2)−0.015 (2)0.0055 (17)−0.0135 (19)
C120.0339 (19)0.042 (3)0.037 (2)−0.0103 (19)−0.0002 (16)−0.0146 (18)
C130.0309 (18)0.036 (2)0.041 (2)−0.0124 (18)0.0007 (16)−0.0115 (17)
C140.0349 (19)0.033 (2)0.043 (2)−0.0107 (18)0.0012 (17)−0.0117 (18)
C150.0341 (19)0.035 (2)0.042 (2)−0.0078 (18)−0.0064 (17)−0.0082 (17)
C160.039 (2)0.040 (3)0.049 (2)−0.0102 (19)0.0005 (18)−0.0144 (19)
C170.035 (2)0.055 (3)0.069 (3)−0.013 (2)−0.001 (2)−0.018 (2)
C180.059 (3)0.062 (3)0.054 (3)−0.024 (3)−0.002 (2)−0.021 (2)
C190.045 (2)0.061 (3)0.048 (2)−0.024 (2)0.0039 (19)−0.020 (2)
N10.0301 (15)0.037 (2)0.0351 (16)−0.0090 (14)−0.0009 (13)−0.0116 (14)
N20.0330 (15)0.039 (2)0.0385 (17)−0.0128 (15)0.0000 (13)−0.0122 (14)
N30.0365 (17)0.054 (2)0.0498 (19)−0.0192 (17)0.0049 (15)−0.0240 (17)
N40.0352 (17)0.054 (2)0.0458 (19)−0.0159 (17)0.0052 (16)−0.0251 (17)
N50.0453 (19)0.056 (3)0.063 (2)−0.0192 (19)−0.0048 (18)−0.0200 (19)
N60.066 (2)0.071 (3)0.039 (2)−0.021 (2)−0.0080 (18)−0.011 (2)
O10.0430 (14)0.0474 (19)0.0355 (14)−0.0159 (14)−0.0033 (12)−0.0087 (13)
O20.0730 (19)0.042 (2)0.0392 (15)−0.0145 (17)−0.0036 (14)−0.0128 (13)
O30.095 (3)0.073 (3)0.065 (2)−0.002 (2)−0.0267 (19)−0.0183 (19)
O40.102 (3)0.118 (4)0.056 (2)−0.006 (3)−0.0311 (19)−0.038 (2)
O50.0344 (14)0.0447 (19)0.0428 (15)−0.0066 (14)0.0028 (13)−0.0178 (13)
O60.0490 (17)0.049 (2)0.0525 (17)−0.0168 (16)−0.0001 (14)−0.0135 (15)
Co1—O12.099 (2)C11—C121.369 (5)
Co1—O1i2.099 (2)C11—H11A0.9300
Co1—O5i2.117 (3)C12—N11.335 (4)
Co1—O52.117 (3)C12—H12A0.9300
Co1—N1i2.155 (3)C13—N31.321 (4)
Co1—N12.155 (3)C13—N21.367 (4)
C1—O21.251 (5)C14—N21.329 (4)
C1—O11.266 (5)C14—N41.335 (4)
C1—C21.518 (5)C14—C151.473 (4)
C2—C31.385 (6)C15—C161.381 (5)
C2—C71.387 (5)C15—C191.387 (5)
C3—C41.389 (5)C16—C171.375 (5)
C3—H3A0.9300C16—H16A0.9300
C4—C51.373 (6)C17—N51.335 (5)
C4—H4A0.9300C17—H17A0.9300
C5—C61.379 (6)C18—N51.332 (5)
C5—H50.9300C18—C191.376 (5)
C6—C71.374 (5)C18—H18A0.9300
C6—N61.468 (5)C19—H19A0.9300
C7—H7A0.9300N3—N41.354 (4)
C8—N11.335 (4)N4—H40.850 (18)
C8—C91.388 (4)N6—O31.214 (5)
C8—H8A0.9300N6—O41.219 (4)
C9—C101.382 (5)O5—H5A0.84 (3)
C9—C131.470 (5)O5—H5B0.87 (3)
C10—C111.376 (5)O6—H6A0.85 (4)
C10—H10A0.9300O6—H6B0.85 (3)
O1—Co1—O1i180.00C12—C11—C10119.5 (3)
O1—Co1—O5i92.14 (11)C12—C11—H11A120.2
O1i—Co1—O5i87.86 (11)C10—C11—H11A120.2
O1—Co1—O587.86 (11)N1—C12—C11122.9 (3)
O1i—Co1—O592.14 (11)N1—C12—H12A118.6
O5i—Co1—O5180.00C11—C12—H12A118.6
O1—Co1—N1i90.32 (10)N3—C13—N2114.5 (3)
O1i—Co1—N1i89.68 (10)N3—C13—C9121.0 (3)
O5i—Co1—N1i86.07 (11)N2—C13—C9124.5 (3)
O5—Co1—N1i93.93 (11)N2—C14—N4109.5 (3)
O1—Co1—N189.68 (10)N2—C14—C15126.5 (3)
O1i—Co1—N190.32 (10)N4—C14—C15124.0 (3)
O5i—Co1—N193.93 (11)C16—C15—C19117.3 (3)
O5—Co1—N186.07 (11)C16—C15—C14120.8 (3)
N1i—Co1—N1180.00C19—C15—C14121.9 (3)
O2—C1—O1125.7 (3)C17—C16—C15119.1 (3)
O2—C1—C2118.0 (4)C17—C16—H16A120.5
O1—C1—C2116.3 (4)C15—C16—H16A120.5
C3—C2—C7119.6 (3)N5—C17—C16124.3 (4)
C3—C2—C1121.7 (4)N5—C17—H17A117.8
C7—C2—C1118.7 (4)C16—C17—H17A117.8
C2—C3—C4120.4 (4)N5—C18—C19123.9 (4)
C2—C3—H3A119.8N5—C18—H18A118.1
C4—C3—H3A119.8C19—C18—H18A118.1
C5—C4—C3120.2 (4)C18—C19—C15119.4 (3)
C5—C4—H4A119.9C18—C19—H19A120.3
C3—C4—H4A119.9C15—C19—H19A120.3
C4—C5—C6118.6 (4)C8—N1—C12117.4 (3)
C4—C5—H5120.7C8—N1—Co1119.6 (2)
C6—C5—H5120.7C12—N1—Co1123.0 (2)
C7—C6—C5122.4 (4)C14—N2—C13102.9 (3)
C7—C6—N6117.8 (4)C13—N3—N4102.2 (3)
C5—C6—N6119.8 (4)C14—N4—N3110.9 (3)
C6—C7—C2118.7 (4)C14—N4—H4133 (2)
C6—C7—H7A120.6N3—N4—H4116 (2)
C2—C7—H7A120.6C18—N5—C17116.0 (3)
N1—C8—C9123.5 (3)O3—N6—O4122.5 (4)
N1—C8—H8A118.3O3—N6—C6119.4 (3)
C9—C8—H8A118.3O4—N6—C6118.1 (4)
C10—C9—C8117.8 (3)C1—O1—Co1128.0 (2)
C10—C9—C13123.3 (3)Co1—O5—H5A123 (3)
C8—C9—C13118.8 (3)Co1—O5—H5B95 (4)
C11—C10—C9118.8 (3)H5A—O5—H5B108 (3)
C11—C10—H10A120.6H6A—O6—H6B110 (3)
C9—C10—H10A120.6
O2—C1—C2—C3172.9 (3)C9—C8—N1—C122.4 (5)
O1—C1—C2—C3−7.8 (5)C9—C8—N1—Co1−175.1 (3)
O2—C1—C2—C7−8.0 (5)C11—C12—N1—C8−1.3 (6)
O1—C1—C2—C7171.3 (3)C11—C12—N1—Co1176.1 (3)
C7—C2—C3—C41.7 (6)O1—Co1—N1—C822.1 (3)
C1—C2—C3—C4−179.1 (3)O1i—Co1—N1—C8−157.9 (3)
C2—C3—C4—C5−1.4 (7)O5i—Co1—N1—C8114.2 (3)
C3—C4—C5—C60.2 (7)O5—Co1—N1—C8−65.8 (3)
C4—C5—C6—C70.8 (6)O1—Co1—N1—C12−155.3 (3)
C4—C5—C6—N6179.9 (4)O1i—Co1—N1—C1224.7 (3)
C5—C6—C7—C2−0.5 (5)O5i—Co1—N1—C12−63.2 (3)
N6—C6—C7—C2−179.7 (3)O5—Co1—N1—C12116.8 (3)
C3—C2—C7—C6−0.7 (5)N4—C14—N2—C130.6 (4)
C1—C2—C7—C6−179.9 (3)C15—C14—N2—C13−179.1 (4)
N1—C8—C9—C10−2.6 (6)N3—C13—N2—C14−0.4 (4)
N1—C8—C9—C13178.0 (3)C9—C13—N2—C14177.1 (4)
C8—C9—C10—C111.5 (6)N2—C13—N3—N40.0 (4)
C13—C9—C10—C11−179.1 (4)C9—C13—N3—N4−177.6 (3)
C9—C10—C11—C12−0.6 (6)N2—C14—N4—N3−0.7 (5)
C10—C11—C12—N10.5 (6)C15—C14—N4—N3179.1 (3)
C10—C9—C13—N3−165.6 (4)C13—N3—N4—C140.4 (4)
C8—C9—C13—N313.7 (6)C19—C18—N5—C17−0.6 (7)
C10—C9—C13—N217.1 (6)C16—C17—N5—C181.5 (7)
C8—C9—C13—N2−163.6 (4)C7—C6—N6—O3−7.5 (5)
N2—C14—C15—C16−12.9 (6)C5—C6—N6—O3173.4 (4)
N4—C14—C15—C16167.4 (4)C7—C6—N6—O4175.9 (4)
N2—C14—C15—C19166.2 (4)C5—C6—N6—O4−3.3 (5)
N4—C14—C15—C19−13.6 (6)O2—C1—O1—Co117.2 (5)
C19—C15—C16—C17−0.4 (6)C2—C1—O1—Co1−162.0 (2)
C14—C15—C16—C17178.7 (4)O5i—Co1—O1—C1−7.9 (3)
C15—C16—C17—N5−1.0 (7)O5—Co1—O1—C1172.1 (3)
N5—C18—C19—C15−0.8 (7)N1i—Co1—O1—C1−94.0 (3)
C16—C15—C19—C181.3 (6)N1—Co1—O1—C186.0 (3)
C14—C15—C19—C18−177.8 (4)
D—H···AD—HH···AD···AD—H···A
N4—H4···O6ii0.85 (3)1.94 (3)2.778 (5)169 (3)
O5—H5A···N2iii0.84 (3)2.02 (3)2.856 (4)174 (4)
O5—H5B···O2i0.87 (3)1.79 (3)2.644 (4)167 (5)
O6—H6A···N5iv0.85 (4)2.05 (4)2.873 (5)166 (3)
O6—H6B···O2v0.85 (3)1.93 (4)2.735 (4)158 (4)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N4—H4⋯O6i0.85 (3)1.94 (3)2.778 (5)169 (3)
O5—H5A⋯N2ii0.84 (3)2.02 (3)2.856 (4)174 (4)
O5—H5B⋯O2iii0.87 (3)1.79 (3)2.644 (4)167 (5)
O6—H6A⋯N5iv0.85 (4)2.05 (4)2.873 (5)166 (3)
O6—H6B⋯O2v0.85 (3)1.93 (4)2.735 (4)158 (4)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Molecular tectonics of mixed-ligand metal-organic frameworks: positional isomeric effect, metal-directed assembly, and structural diversification.

Authors:  Miao Du; Xiu-Juan Jiang; Xiao-Jun Zhao
Journal:  Inorg Chem       Date:  2007-04-14       Impact factor: 5.165

3.  Spin canting and slow relaxation in a 3D pillared nickel-organic framework.

Authors:  Fu-Ping Huang; Jin-Lei Tian; Dong-Dong Li; Gong-Jun Chen; Wen Gu; Shi-Ping Yan; Xin Liu; Dai-Zheng Liao; Peng Cheng
Journal:  Inorg Chem       Date:  2010-03-01       Impact factor: 5.165

4.  Tetra-aqua-bis(3,5-di-4-pyridyl-1,2,4-triazolato-κN)cobalt(II) dihydrate.

Authors:  Lin Yi Dong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-04-08

5.  Tetra-aqua-bis(3,5-di-4-pyridyl-1H-1,2,4-triazolido)cadmium(II) dihydrate.

Authors:  Ti-Lou Liu; Yun-Liang Zhang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-07-11
  5 in total

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