Literature DB >> 21583371

Tetra-aqua-bis(3,5-di-4-pyridyl-1H-1,2,4-triazolido)cadmium(II) dihydrate.

Ti-Lou Liu1, Yun-Liang Zhang.   

Abstract

In the title compound, [Cd(C(12)H(8)N(5))(2)(H(2)O)(4)]·2H(2)O, the Cd(II) atom is located on an inversion center and is coordinated by the two N atoms [Cd-N = 2.278 (2) Å] and four O atoms [Cd-O = 2.304 (2)-2.322 (2) Å] in a distorted octa-hedral geometry. Inter-molecular O-H⋯O and O-H⋯N hydrogen bonds link the complex into a three-dimensional supra-molecular framework.

Entities:  

Year:  2009        PMID: 21583371      PMCID: PMC2977399          DOI: 10.1107/S1600536809024908

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the properties of hydrogen bonds in biological systems, see: Deisenhofer & Michel (1989 ▶). For extended supra­molecular structures, see: Beatty (2003 ▶); Li et al. (2006 ▶); Russell & Ward (1996 ▶). For comparitive bond distances, see: Wen et al. (2005 ▶); Fu et al. (2007 ▶).

Experimental

Crystal data

[Cd(C12H8N5)2(H2O)4]·2H2O M = 664.97 Monoclinic, a = 7.5030 (15) Å b = 15.748 (3) Å c = 12.009 (2) Å β = 106.68 (3)° V = 1359.2 (5) Å3 Z = 2 Mo Kα radiation μ = 0.86 mm−1 T = 293 K 0.40 × 0.20 × 0.12 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 1998 ▶) T min = 0.815, T max = 0.911 9599 measured reflections 3101 independent reflections 2663 reflections with I > 2σ(I) R int = 0.035

Refinement

R[F 2 > 2σ(F 2)] = 0.030 wR(F 2) = 0.070 S = 1.01 3101 reflections 211 parameters 9 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.30 e Å−3 Δρmin = −0.47 e Å−3 Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT (Bruker, 1998 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809024908/bg2273sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809024908/bg2273Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cd(C12H8N5)2(H2O)4]·2H2OF(000) = 676
Mr = 664.97Dx = 1.625 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2567 reflections
a = 7.5030 (15) Åθ = 2.6–27.3°
b = 15.748 (3) ŵ = 0.86 mm1
c = 12.009 (2) ÅT = 293 K
β = 106.68 (3)°Block, colorless
V = 1359.2 (5) Å30.40 × 0.20 × 0.12 mm
Z = 2
Bruker SMART CCD area-detector diffractometer3101 independent reflections
Radiation source: fine-focus sealed tube2663 reflections with I > 2σ(I)
graphiteRint = 0.035
φ and ω scansθmax = 27.5°, θmin = 3.1°
Absorption correction: multi-scan (SADABS; Bruker, 1998)h = −9→9
Tmin = 0.815, Tmax = 0.911k = −20→20
9599 measured reflectionsl = −15→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.030Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.070H atoms treated by a mixture of independent and constrained refinement
S = 1.01w = 1/[σ2(Fo2) + (0.0271P)2 + P] where P = (Fo2 + 2Fc2)/3
3101 reflections(Δ/σ)max < 0.001
211 parametersΔρmax = 0.30 e Å3
9 restraintsΔρmin = −0.47 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cd10.00000.50000.50000.02624 (8)
C10.0093 (4)0.67991 (14)0.3780 (2)0.0362 (6)
H1−0.03920.64760.31130.043*
C20.0355 (4)0.76513 (14)0.3660 (2)0.0350 (5)
H20.00380.78940.29230.042*
C30.1089 (3)0.81536 (13)0.46302 (19)0.0260 (5)
C40.1464 (4)0.77542 (14)0.5700 (2)0.0371 (6)
H40.19190.80650.63820.045*
C50.1161 (4)0.68949 (15)0.5749 (2)0.0380 (6)
H50.14300.66380.64760.046*
C60.1502 (3)0.90502 (13)0.45109 (18)0.0265 (5)
C70.2512 (3)1.02895 (14)0.4805 (2)0.0274 (5)
C80.3340 (3)1.10850 (13)0.53511 (19)0.0276 (5)
C90.3496 (4)1.17874 (16)0.4689 (2)0.0472 (7)
H90.31271.17540.38820.057*
C100.4202 (5)1.25321 (16)0.5236 (2)0.0515 (8)
H100.42851.29950.47720.062*
C110.4620 (4)1.19586 (16)0.7006 (2)0.0423 (6)
H110.50121.20100.78110.051*
C120.3919 (4)1.11875 (15)0.6541 (2)0.0376 (6)
H120.38371.07380.70270.045*
H1A0.081 (4)0.4477 (19)0.303 (2)0.065 (11)*
H2A0.251 (5)0.487 (2)0.722 (2)0.076 (12)*
H3A0.333 (4)0.5708 (17)0.2136 (15)0.057 (10)*
H1B0.225 (4)0.5023 (14)0.349 (3)0.050 (9)*
H2B0.371 (3)0.474 (2)0.656 (3)0.071 (11)*
H3B0.419 (4)0.6266 (12)0.301 (2)0.059 (9)*
N10.0504 (3)0.64121 (11)0.48107 (16)0.0309 (4)
N20.1075 (3)0.94209 (12)0.34725 (16)0.0338 (5)
N30.1745 (3)1.02282 (12)0.36636 (17)0.0351 (5)
N40.2401 (3)0.95673 (11)0.53920 (16)0.0269 (4)
N50.4772 (3)1.26344 (13)0.6379 (2)0.0413 (5)
O10.1563 (3)0.46448 (12)0.36541 (15)0.0358 (4)
O20.2657 (3)0.49379 (12)0.65460 (16)0.0416 (4)
O30.3821 (3)0.57563 (10)0.28626 (15)0.0349 (4)
U11U22U33U12U13U23
Cd10.03522 (14)0.01796 (11)0.02429 (13)−0.00424 (9)0.00655 (10)−0.00067 (8)
C10.0537 (16)0.0256 (11)0.0261 (12)−0.0094 (11)0.0063 (11)−0.0044 (9)
C20.0516 (15)0.0269 (11)0.0240 (11)−0.0059 (11)0.0067 (11)0.0028 (9)
C30.0296 (11)0.0208 (10)0.0275 (11)−0.0013 (8)0.0079 (9)0.0014 (8)
C40.0577 (16)0.0233 (11)0.0255 (12)−0.0090 (11)0.0042 (12)−0.0027 (9)
C50.0596 (17)0.0254 (11)0.0249 (12)−0.0073 (11)0.0057 (12)0.0031 (9)
C60.0331 (12)0.0206 (10)0.0241 (11)−0.0013 (9)0.0056 (9)0.0011 (8)
C70.0333 (12)0.0205 (9)0.0295 (12)−0.0024 (9)0.0106 (10)0.0006 (9)
C80.0302 (12)0.0204 (10)0.0314 (12)−0.0019 (9)0.0075 (10)−0.0006 (9)
C90.078 (2)0.0311 (13)0.0308 (13)−0.0176 (13)0.0137 (14)−0.0018 (10)
C100.084 (2)0.0276 (12)0.0446 (16)−0.0188 (14)0.0214 (16)0.0009 (11)
C110.0532 (16)0.0364 (13)0.0303 (13)−0.0066 (12)0.0010 (12)−0.0046 (10)
C120.0496 (15)0.0260 (11)0.0327 (13)−0.0042 (10)0.0046 (12)0.0042 (9)
N10.0435 (11)0.0199 (9)0.0278 (10)−0.0049 (8)0.0077 (9)0.0005 (7)
N20.0487 (13)0.0241 (9)0.0258 (10)−0.0087 (9)0.0066 (9)0.0016 (7)
N30.0523 (13)0.0239 (9)0.0265 (10)−0.0089 (9)0.0073 (10)0.0020 (8)
N40.0348 (10)0.0192 (9)0.0261 (10)−0.0021 (7)0.0078 (8)0.0005 (7)
N50.0488 (13)0.0280 (10)0.0458 (13)−0.0092 (9)0.0112 (11)−0.0087 (9)
O10.0405 (10)0.0387 (10)0.0295 (9)−0.0055 (8)0.0120 (8)−0.0026 (8)
O20.0349 (10)0.0577 (12)0.0288 (9)0.0058 (9)0.0035 (8)−0.0038 (8)
O30.0458 (10)0.0258 (8)0.0299 (9)−0.0037 (7)0.0060 (8)−0.0015 (7)
Cd1—N1i2.278 (2)C7—N41.353 (3)
Cd1—N12.278 (2)C7—C81.467 (3)
Cd1—O22.304 (2)C8—C121.379 (3)
Cd1—O2i2.304 (2)C8—C91.386 (3)
Cd1—O1i2.322 (2)C9—C101.373 (3)
Cd1—O12.322 (2)C9—H90.9300
C1—N11.334 (3)C10—N51.325 (3)
C1—C21.370 (3)C10—H100.9300
C1—H10.9300C11—N51.327 (3)
C2—C31.385 (3)C11—C121.376 (3)
C2—H20.9300C11—H110.9300
C3—C41.385 (3)C12—H120.9300
C3—C61.461 (3)N2—N31.362 (3)
C4—C51.376 (3)O1—H1A0.844 (17)
C4—H40.9300O1—H1B0.845 (17)
C5—N11.331 (3)O2—H2A0.857 (17)
C5—H50.9300O2—H2B0.847 (17)
C6—N21.330 (3)O3—H3A0.848 (16)
C6—N41.352 (3)O3—H3B0.850 (17)
C7—N31.329 (3)
N1i—Cd1—N1180.0N3—C7—N4113.8 (2)
N1i—Cd1—O290.47 (7)N3—C7—C8121.7 (2)
N1—Cd1—O289.53 (7)N4—C7—C8124.5 (2)
N1i—Cd1—O2i89.53 (7)C12—C8—C9116.6 (2)
N1—Cd1—O2i90.47 (7)C12—C8—C7122.1 (2)
O2—Cd1—O2i180.0C9—C8—C7121.3 (2)
N1i—Cd1—O1i91.96 (7)C10—C9—C8119.5 (2)
N1—Cd1—O1i88.04 (7)C10—C9—H9120.3
O2—Cd1—O1i86.71 (7)C8—C9—H9120.3
O2i—Cd1—O1i93.29 (7)N5—C10—C9124.3 (2)
N1i—Cd1—O188.04 (7)N5—C10—H10117.8
N1—Cd1—O191.96 (7)C9—C10—H10117.8
O2—Cd1—O193.29 (7)N5—C11—C12124.3 (2)
O2i—Cd1—O186.71 (7)N5—C11—H11117.9
O1i—Cd1—O1180.0C12—C11—H11117.9
N1—C1—C2122.9 (2)C11—C12—C8119.6 (2)
N1—C1—H1118.5C11—C12—H12120.2
C2—C1—H1118.5C8—C12—H12120.2
C1—C2—C3120.4 (2)C5—N1—C1117.07 (19)
C1—C2—H2119.8C5—N1—Cd1120.33 (15)
C3—C2—H2119.8C1—N1—Cd1122.54 (15)
C2—C3—C4116.5 (2)C6—N2—N3105.89 (18)
C2—C3—C6120.91 (19)C7—N3—N2105.73 (18)
C4—C3—C6122.5 (2)C6—N4—C7100.94 (18)
C5—C4—C3119.6 (2)C10—N5—C11115.8 (2)
C5—C4—H4120.2Cd1—O1—H1A111 (2)
C3—C4—H4120.2Cd1—O1—H1B117 (2)
N1—C5—C4123.5 (2)H1A—O1—H1B108 (2)
N1—C5—H5118.3Cd1—O2—H2A117 (2)
C4—C5—H5118.3Cd1—O2—H2B128 (2)
N2—C6—N4113.65 (19)H2A—O2—H2B108 (2)
N2—C6—C3121.01 (19)H3A—O3—H3B108 (2)
N4—C6—C3125.27 (19)
N1—C1—C2—C30.6 (4)C2—C1—N1—C51.3 (4)
C1—C2—C3—C4−2.3 (4)C2—C1—N1—Cd1178.6 (2)
C1—C2—C3—C6175.5 (2)O2—Cd1—N1—C5−38.2 (2)
C2—C3—C4—C52.2 (4)O2i—Cd1—N1—C5141.8 (2)
C6—C3—C4—C5−175.5 (2)O1i—Cd1—N1—C548.5 (2)
C3—C4—C5—N1−0.4 (4)O1—Cd1—N1—C5−131.5 (2)
C2—C3—C6—N24.4 (3)O2—Cd1—N1—C1144.6 (2)
C4—C3—C6—N2−178.0 (2)O2i—Cd1—N1—C1−35.4 (2)
C2—C3—C6—N4−172.4 (2)O1i—Cd1—N1—C1−128.6 (2)
C4—C3—C6—N45.2 (4)O1—Cd1—N1—C151.4 (2)
N3—C7—C8—C12171.4 (2)N4—C6—N2—N30.9 (3)
N4—C7—C8—C12−6.7 (4)C3—C6—N2—N3−176.3 (2)
N3—C7—C8—C9−5.4 (4)N4—C7—N3—N20.3 (3)
N4—C7—C8—C9176.4 (2)C8—C7—N3—N2−178.0 (2)
C12—C8—C9—C100.0 (4)C6—N2—N3—C7−0.6 (3)
C7—C8—C9—C10177.0 (3)N2—C6—N4—C7−0.7 (3)
C8—C9—C10—N50.4 (5)C3—C6—N4—C7176.3 (2)
N5—C11—C12—C80.6 (4)N3—C7—N4—C60.2 (3)
C9—C8—C12—C11−0.4 (4)C8—C7—N4—C6178.5 (2)
C7—C8—C12—C11−177.5 (2)C9—C10—N5—C11−0.3 (5)
C4—C5—N1—C1−1.4 (4)C12—C11—N5—C10−0.2 (4)
C4—C5—N1—Cd1−178.7 (2)
D—H···AD—HH···AD···AD—H···A
O1—H1A···N2ii0.84 (2)1.95 (3)2.768 (3)164 (3)
O1—H1B···O30.85 (3)1.95 (3)2.786 (3)169 (3)
O2—H2A···N3iii0.85 (3)1.98 (3)2.829 (3)171 (3)
O2—H2B···O3iv0.85 (3)1.95 (3)2.758 (3)161 (3)
O3—H3A···N4v0.85 (3)2.06 (2)2.895 (3)171 (3)
O3—H3B···N5vi0.85 (3)1.95 (2)2.796 (3)170 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1A⋯N2i0.84 (2)1.95 (3)2.768 (3)164 (3)
O1—H1B⋯O30.85 (3)1.95 (3)2.786 (3)169 (3)
O2—H2A⋯N3ii0.85 (3)1.98 (3)2.829 (3)171 (3)
O2—H2B⋯O3iii0.85 (3)1.95 (3)2.758 (3)161 (3)
O3—H3A⋯N4iv0.85 (3)2.06 (2)2.895 (3)171 (3)
O3—H3B⋯N5v0.85 (3)1.95 (2)2.796 (3)170 (3)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

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