| Literature DB >> 21583371 |
Abstract
In the title compound, [Cd(C(12)H(8)N(5))(2)(H(2)O)(4)]·2H(2)O, the Cd(II) atom is located on an inversion center and is coordinated by the two N atoms [Cd-N = 2.278 (2) Å] and four O atoms [Cd-O = 2.304 (2)-2.322 (2) Å] in a distorted octa-hedral geometry. Inter-molecular O-H⋯O and O-H⋯N hydrogen bonds link the complex into a three-dimensional supra-molecular framework.Entities:
Year: 2009 PMID: 21583371 PMCID: PMC2977399 DOI: 10.1107/S1600536809024908
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Cd(C12H8N5)2(H2O)4]·2H2O | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 2567 reflections |
| θ = 2.6–27.3° | |
| µ = 0.86 mm−1 | |
| β = 106.68 (3)° | Block, colorless |
| 0.40 × 0.20 × 0.12 mm | |
| Bruker SMART CCD area-detector diffractometer | 3101 independent reflections |
| Radiation source: fine-focus sealed tube | 2663 reflections with |
| graphite | |
| φ and ω scans | θmax = 27.5°, θmin = 3.1° |
| Absorption correction: multi-scan ( | |
| 9599 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3101 reflections | (Δ/σ)max < 0.001 |
| 211 parameters | Δρmax = 0.30 e Å−3 |
| 9 restraints | Δρmin = −0.47 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Cd1 | 0.0000 | 0.5000 | 0.5000 | 0.02624 (8) | |
| C1 | 0.0093 (4) | 0.67991 (14) | 0.3780 (2) | 0.0362 (6) | |
| H1 | −0.0392 | 0.6476 | 0.3113 | 0.043* | |
| C2 | 0.0355 (4) | 0.76513 (14) | 0.3660 (2) | 0.0350 (5) | |
| H2 | 0.0038 | 0.7894 | 0.2923 | 0.042* | |
| C3 | 0.1089 (3) | 0.81536 (13) | 0.46302 (19) | 0.0260 (5) | |
| C4 | 0.1464 (4) | 0.77542 (14) | 0.5700 (2) | 0.0371 (6) | |
| H4 | 0.1919 | 0.8065 | 0.6382 | 0.045* | |
| C5 | 0.1161 (4) | 0.68949 (15) | 0.5749 (2) | 0.0380 (6) | |
| H5 | 0.1430 | 0.6638 | 0.6476 | 0.046* | |
| C6 | 0.1502 (3) | 0.90502 (13) | 0.45109 (18) | 0.0265 (5) | |
| C7 | 0.2512 (3) | 1.02895 (14) | 0.4805 (2) | 0.0274 (5) | |
| C8 | 0.3340 (3) | 1.10850 (13) | 0.53511 (19) | 0.0276 (5) | |
| C9 | 0.3496 (4) | 1.17874 (16) | 0.4689 (2) | 0.0472 (7) | |
| H9 | 0.3127 | 1.1754 | 0.3882 | 0.057* | |
| C10 | 0.4202 (5) | 1.25321 (16) | 0.5236 (2) | 0.0515 (8) | |
| H10 | 0.4285 | 1.2995 | 0.4772 | 0.062* | |
| C11 | 0.4620 (4) | 1.19586 (16) | 0.7006 (2) | 0.0423 (6) | |
| H11 | 0.5012 | 1.2010 | 0.7811 | 0.051* | |
| C12 | 0.3919 (4) | 1.11875 (15) | 0.6541 (2) | 0.0376 (6) | |
| H12 | 0.3837 | 1.0738 | 0.7027 | 0.045* | |
| H1A | 0.081 (4) | 0.4477 (19) | 0.303 (2) | 0.065 (11)* | |
| H2A | 0.251 (5) | 0.487 (2) | 0.722 (2) | 0.076 (12)* | |
| H3A | 0.333 (4) | 0.5708 (17) | 0.2136 (15) | 0.057 (10)* | |
| H1B | 0.225 (4) | 0.5023 (14) | 0.349 (3) | 0.050 (9)* | |
| H2B | 0.371 (3) | 0.474 (2) | 0.656 (3) | 0.071 (11)* | |
| H3B | 0.419 (4) | 0.6266 (12) | 0.301 (2) | 0.059 (9)* | |
| N1 | 0.0504 (3) | 0.64121 (11) | 0.48107 (16) | 0.0309 (4) | |
| N2 | 0.1075 (3) | 0.94209 (12) | 0.34725 (16) | 0.0338 (5) | |
| N3 | 0.1745 (3) | 1.02282 (12) | 0.36636 (17) | 0.0351 (5) | |
| N4 | 0.2401 (3) | 0.95673 (11) | 0.53920 (16) | 0.0269 (4) | |
| N5 | 0.4772 (3) | 1.26344 (13) | 0.6379 (2) | 0.0413 (5) | |
| O1 | 0.1563 (3) | 0.46448 (12) | 0.36541 (15) | 0.0358 (4) | |
| O2 | 0.2657 (3) | 0.49379 (12) | 0.65460 (16) | 0.0416 (4) | |
| O3 | 0.3821 (3) | 0.57563 (10) | 0.28626 (15) | 0.0349 (4) |
| Cd1 | 0.03522 (14) | 0.01796 (11) | 0.02429 (13) | −0.00424 (9) | 0.00655 (10) | −0.00067 (8) |
| C1 | 0.0537 (16) | 0.0256 (11) | 0.0261 (12) | −0.0094 (11) | 0.0063 (11) | −0.0044 (9) |
| C2 | 0.0516 (15) | 0.0269 (11) | 0.0240 (11) | −0.0059 (11) | 0.0067 (11) | 0.0028 (9) |
| C3 | 0.0296 (11) | 0.0208 (10) | 0.0275 (11) | −0.0013 (8) | 0.0079 (9) | 0.0014 (8) |
| C4 | 0.0577 (16) | 0.0233 (11) | 0.0255 (12) | −0.0090 (11) | 0.0042 (12) | −0.0027 (9) |
| C5 | 0.0596 (17) | 0.0254 (11) | 0.0249 (12) | −0.0073 (11) | 0.0057 (12) | 0.0031 (9) |
| C6 | 0.0331 (12) | 0.0206 (10) | 0.0241 (11) | −0.0013 (9) | 0.0056 (9) | 0.0011 (8) |
| C7 | 0.0333 (12) | 0.0205 (9) | 0.0295 (12) | −0.0024 (9) | 0.0106 (10) | 0.0006 (9) |
| C8 | 0.0302 (12) | 0.0204 (10) | 0.0314 (12) | −0.0019 (9) | 0.0075 (10) | −0.0006 (9) |
| C9 | 0.078 (2) | 0.0311 (13) | 0.0308 (13) | −0.0176 (13) | 0.0137 (14) | −0.0018 (10) |
| C10 | 0.084 (2) | 0.0276 (12) | 0.0446 (16) | −0.0188 (14) | 0.0214 (16) | 0.0009 (11) |
| C11 | 0.0532 (16) | 0.0364 (13) | 0.0303 (13) | −0.0066 (12) | 0.0010 (12) | −0.0046 (10) |
| C12 | 0.0496 (15) | 0.0260 (11) | 0.0327 (13) | −0.0042 (10) | 0.0046 (12) | 0.0042 (9) |
| N1 | 0.0435 (11) | 0.0199 (9) | 0.0278 (10) | −0.0049 (8) | 0.0077 (9) | 0.0005 (7) |
| N2 | 0.0487 (13) | 0.0241 (9) | 0.0258 (10) | −0.0087 (9) | 0.0066 (9) | 0.0016 (7) |
| N3 | 0.0523 (13) | 0.0239 (9) | 0.0265 (10) | −0.0089 (9) | 0.0073 (10) | 0.0020 (8) |
| N4 | 0.0348 (10) | 0.0192 (9) | 0.0261 (10) | −0.0021 (7) | 0.0078 (8) | 0.0005 (7) |
| N5 | 0.0488 (13) | 0.0280 (10) | 0.0458 (13) | −0.0092 (9) | 0.0112 (11) | −0.0087 (9) |
| O1 | 0.0405 (10) | 0.0387 (10) | 0.0295 (9) | −0.0055 (8) | 0.0120 (8) | −0.0026 (8) |
| O2 | 0.0349 (10) | 0.0577 (12) | 0.0288 (9) | 0.0058 (9) | 0.0035 (8) | −0.0038 (8) |
| O3 | 0.0458 (10) | 0.0258 (8) | 0.0299 (9) | −0.0037 (7) | 0.0060 (8) | −0.0015 (7) |
| Cd1—N1i | 2.278 (2) | C7—N4 | 1.353 (3) |
| Cd1—N1 | 2.278 (2) | C7—C8 | 1.467 (3) |
| Cd1—O2 | 2.304 (2) | C8—C12 | 1.379 (3) |
| Cd1—O2i | 2.304 (2) | C8—C9 | 1.386 (3) |
| Cd1—O1i | 2.322 (2) | C9—C10 | 1.373 (3) |
| Cd1—O1 | 2.322 (2) | C9—H9 | 0.9300 |
| C1—N1 | 1.334 (3) | C10—N5 | 1.325 (3) |
| C1—C2 | 1.370 (3) | C10—H10 | 0.9300 |
| C1—H1 | 0.9300 | C11—N5 | 1.327 (3) |
| C2—C3 | 1.385 (3) | C11—C12 | 1.376 (3) |
| C2—H2 | 0.9300 | C11—H11 | 0.9300 |
| C3—C4 | 1.385 (3) | C12—H12 | 0.9300 |
| C3—C6 | 1.461 (3) | N2—N3 | 1.362 (3) |
| C4—C5 | 1.376 (3) | O1—H1A | 0.844 (17) |
| C4—H4 | 0.9300 | O1—H1B | 0.845 (17) |
| C5—N1 | 1.331 (3) | O2—H2A | 0.857 (17) |
| C5—H5 | 0.9300 | O2—H2B | 0.847 (17) |
| C6—N2 | 1.330 (3) | O3—H3A | 0.848 (16) |
| C6—N4 | 1.352 (3) | O3—H3B | 0.850 (17) |
| C7—N3 | 1.329 (3) | ||
| N1i—Cd1—N1 | 180.0 | N3—C7—N4 | 113.8 (2) |
| N1i—Cd1—O2 | 90.47 (7) | N3—C7—C8 | 121.7 (2) |
| N1—Cd1—O2 | 89.53 (7) | N4—C7—C8 | 124.5 (2) |
| N1i—Cd1—O2i | 89.53 (7) | C12—C8—C9 | 116.6 (2) |
| N1—Cd1—O2i | 90.47 (7) | C12—C8—C7 | 122.1 (2) |
| O2—Cd1—O2i | 180.0 | C9—C8—C7 | 121.3 (2) |
| N1i—Cd1—O1i | 91.96 (7) | C10—C9—C8 | 119.5 (2) |
| N1—Cd1—O1i | 88.04 (7) | C10—C9—H9 | 120.3 |
| O2—Cd1—O1i | 86.71 (7) | C8—C9—H9 | 120.3 |
| O2i—Cd1—O1i | 93.29 (7) | N5—C10—C9 | 124.3 (2) |
| N1i—Cd1—O1 | 88.04 (7) | N5—C10—H10 | 117.8 |
| N1—Cd1—O1 | 91.96 (7) | C9—C10—H10 | 117.8 |
| O2—Cd1—O1 | 93.29 (7) | N5—C11—C12 | 124.3 (2) |
| O2i—Cd1—O1 | 86.71 (7) | N5—C11—H11 | 117.9 |
| O1i—Cd1—O1 | 180.0 | C12—C11—H11 | 117.9 |
| N1—C1—C2 | 122.9 (2) | C11—C12—C8 | 119.6 (2) |
| N1—C1—H1 | 118.5 | C11—C12—H12 | 120.2 |
| C2—C1—H1 | 118.5 | C8—C12—H12 | 120.2 |
| C1—C2—C3 | 120.4 (2) | C5—N1—C1 | 117.07 (19) |
| C1—C2—H2 | 119.8 | C5—N1—Cd1 | 120.33 (15) |
| C3—C2—H2 | 119.8 | C1—N1—Cd1 | 122.54 (15) |
| C2—C3—C4 | 116.5 (2) | C6—N2—N3 | 105.89 (18) |
| C2—C3—C6 | 120.91 (19) | C7—N3—N2 | 105.73 (18) |
| C4—C3—C6 | 122.5 (2) | C6—N4—C7 | 100.94 (18) |
| C5—C4—C3 | 119.6 (2) | C10—N5—C11 | 115.8 (2) |
| C5—C4—H4 | 120.2 | Cd1—O1—H1A | 111 (2) |
| C3—C4—H4 | 120.2 | Cd1—O1—H1B | 117 (2) |
| N1—C5—C4 | 123.5 (2) | H1A—O1—H1B | 108 (2) |
| N1—C5—H5 | 118.3 | Cd1—O2—H2A | 117 (2) |
| C4—C5—H5 | 118.3 | Cd1—O2—H2B | 128 (2) |
| N2—C6—N4 | 113.65 (19) | H2A—O2—H2B | 108 (2) |
| N2—C6—C3 | 121.01 (19) | H3A—O3—H3B | 108 (2) |
| N4—C6—C3 | 125.27 (19) | ||
| N1—C1—C2—C3 | 0.6 (4) | C2—C1—N1—C5 | 1.3 (4) |
| C1—C2—C3—C4 | −2.3 (4) | C2—C1—N1—Cd1 | 178.6 (2) |
| C1—C2—C3—C6 | 175.5 (2) | O2—Cd1—N1—C5 | −38.2 (2) |
| C2—C3—C4—C5 | 2.2 (4) | O2i—Cd1—N1—C5 | 141.8 (2) |
| C6—C3—C4—C5 | −175.5 (2) | O1i—Cd1—N1—C5 | 48.5 (2) |
| C3—C4—C5—N1 | −0.4 (4) | O1—Cd1—N1—C5 | −131.5 (2) |
| C2—C3—C6—N2 | 4.4 (3) | O2—Cd1—N1—C1 | 144.6 (2) |
| C4—C3—C6—N2 | −178.0 (2) | O2i—Cd1—N1—C1 | −35.4 (2) |
| C2—C3—C6—N4 | −172.4 (2) | O1i—Cd1—N1—C1 | −128.6 (2) |
| C4—C3—C6—N4 | 5.2 (4) | O1—Cd1—N1—C1 | 51.4 (2) |
| N3—C7—C8—C12 | 171.4 (2) | N4—C6—N2—N3 | 0.9 (3) |
| N4—C7—C8—C12 | −6.7 (4) | C3—C6—N2—N3 | −176.3 (2) |
| N3—C7—C8—C9 | −5.4 (4) | N4—C7—N3—N2 | 0.3 (3) |
| N4—C7—C8—C9 | 176.4 (2) | C8—C7—N3—N2 | −178.0 (2) |
| C12—C8—C9—C10 | 0.0 (4) | C6—N2—N3—C7 | −0.6 (3) |
| C7—C8—C9—C10 | 177.0 (3) | N2—C6—N4—C7 | −0.7 (3) |
| C8—C9—C10—N5 | 0.4 (5) | C3—C6—N4—C7 | 176.3 (2) |
| N5—C11—C12—C8 | 0.6 (4) | N3—C7—N4—C6 | 0.2 (3) |
| C9—C8—C12—C11 | −0.4 (4) | C8—C7—N4—C6 | 178.5 (2) |
| C7—C8—C12—C11 | −177.5 (2) | C9—C10—N5—C11 | −0.3 (5) |
| C4—C5—N1—C1 | −1.4 (4) | C12—C11—N5—C10 | −0.2 (4) |
| C4—C5—N1—Cd1 | −178.7 (2) |
| H··· | ||||
| O1—H1A···N2ii | 0.84 (2) | 1.95 (3) | 2.768 (3) | 164 (3) |
| O1—H1B···O3 | 0.85 (3) | 1.95 (3) | 2.786 (3) | 169 (3) |
| O2—H2A···N3iii | 0.85 (3) | 1.98 (3) | 2.829 (3) | 171 (3) |
| O2—H2B···O3iv | 0.85 (3) | 1.95 (3) | 2.758 (3) | 161 (3) |
| O3—H3A···N4v | 0.85 (3) | 2.06 (2) | 2.895 (3) | 171 (3) |
| O3—H3B···N5vi | 0.85 (3) | 1.95 (2) | 2.796 (3) | 170 (3) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O1—H1 | 0.84 (2) | 1.95 (3) | 2.768 (3) | 164 (3) |
| O1—H1 | 0.85 (3) | 1.95 (3) | 2.786 (3) | 169 (3) |
| O2—H2 | 0.85 (3) | 1.98 (3) | 2.829 (3) | 171 (3) |
| O2—H2 | 0.85 (3) | 1.95 (3) | 2.758 (3) | 161 (3) |
| O3—H3 | 0.85 (3) | 2.06 (2) | 2.895 (3) | 171 (3) |
| O3—H3 | 0.85 (3) | 1.95 (2) | 2.796 (3) | 170 (3) |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .