Literature DB >> 21589266

Hexaaqua-magnesium(II) bis-(pyridinium-2,6-dicarboxyl-ate).

Hoda Pasdar, Sanaz Heidari, Hossein Aghabozorg, Behrouz Notash.   

Abstract

In the title compound, [Mg(H(2)O)(6)](C(7)H(4)NO(4))(2), a single six-coordinate Mg(2+) cation (site symmetry 2/m) is bonded to six water mol-ecules in a distorted octa-hedral geometry. The crystal packing between the complex cation and the zwitterionic organic cation (m symmetry) is stabilized by inter-molecular O-H⋯O hydrogen bonds and weak inter-molecular C-H⋯O inter-actions.

Entities:  

Year:  2010        PMID: 21589266      PMCID: PMC3011450          DOI: 10.1107/S1600536810046696

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to proton-transfer compounds, see: Aghabozorg et al. (2008 ▶). For related structures, see: Aghabozorg et al. (2005 ▶); Grossel et al. (2006 ▶); Ptasiewicz-Bak & Leciejewicz (2003 ▶); Dale et al. (2003 ▶); Yang et al. (2005 ▶); Kariuki & Jones (1989 ▶)

Experimental

Crystal data

[Mg(H2O)6](C7H4NO4)2 M = 464.63 Monoclinic, a = 13.432 (3) Å b = 11.108 (2) Å c = 6.5845 (13) Å β = 92.79 (3)° V = 981.3 (3) Å3 Z = 2 Mo Kα radiation μ = 0.17 mm−1 T = 298 K 0.35 × 0.30 × 0.15 mm

Data collection

Stoe IPDS II diffractometer Absorption correction: numerical (X-RED and X-SHAPE; Stoe & Cie, 2005 ▶) T min = 0.940, T max = 0.973 5499 measured reflections 1383 independent reflections 1178 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.095 S = 1.12 1383 reflections 94 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.33 e Å−3 Δρmin = −0.18 e Å−3 Data collection: X-AREA (Stoe & Cie, 2005 ▶); cell refinement: X-AREA; data reduction: X-AREA; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks I, glolbal. DOI: 10.1107/S1600536810046696/jj2069sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810046696/jj2069Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Mg(H2O)6](C7H4NO4)2F(000) = 484.0
Mr = 464.63Dx = 1.572 Mg m3
Monoclinic, C2/mMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2yCell parameters from 1383 reflections
a = 13.432 (3) Åθ = 2.4–29.1°
b = 11.108 (2) ŵ = 0.17 mm1
c = 6.5845 (13) ÅT = 298 K
β = 92.79 (3)°Plate, colorless
V = 981.3 (3) Å30.35 × 0.30 × 0.15 mm
Z = 2
Stoe IPDS II diffractometer1383 independent reflections
Radiation source: fine-focus sealed tube1178 reflections with I > 2σ(I)
graphiteRint = 0.031
Detector resolution: 0.15 pixels mm-1θmax = 29.1°, θmin = 2.4°
rotation method scansh = −17→18
Absorption correction: numerical (X-RED and X-SHAPE; Stoe & Cie, 2005)k = −14→15
Tmin = 0.940, Tmax = 0.973l = −9→8
5499 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.095H atoms treated by a mixture of independent and constrained refinement
S = 1.12w = 1/[σ2(Fo2) + (0.0414P)2 + 0.5177P] where P = (Fo2 + 2Fc2)/3
1383 reflections(Δ/σ)max = 0.001
94 parametersΔρmax = 0.33 e Å3
0 restraintsΔρmin = −0.18 e Å3
Experimental. shape of crystal determined optically
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Mg10.50000.00000.00000.0249 (2)
O10.40364 (11)0.31353 (9)0.27234 (16)0.0499 (3)
O20.36594 (9)0.18375 (8)0.51657 (15)0.0396 (3)
O30.50000.18182 (12)0.00000.0360 (3)
O40.41819 (12)0.00000.2566 (2)0.0357 (3)
O50.36739 (11)0.0000−0.1931 (2)0.0341 (3)
N10.37142 (12)0.50000.4931 (2)0.0257 (3)
C10.31770 (16)0.50000.8796 (3)0.0347 (4)
H10.29890.50001.01370.042*
C20.33156 (11)0.39121 (12)0.78070 (19)0.0312 (3)
H20.32250.31860.84760.037*
C30.35898 (9)0.39277 (10)0.58164 (18)0.0253 (3)
C40.37779 (11)0.28571 (11)0.4447 (2)0.0310 (3)
H30.4708 (14)0.2281 (19)0.084 (3)0.053 (5)*
H40.4046 (15)0.0617 (19)0.327 (3)0.057 (6)*
H50.3664 (16)0.0661 (19)−0.270 (3)0.065 (6)*
H1A0.3899 (19)0.50000.366 (4)0.046 (7)*
U11U22U33U12U13U23
Mg10.0367 (5)0.0173 (4)0.0211 (4)0.0000.0062 (3)0.000
O10.0892 (9)0.0278 (5)0.0351 (5)0.0102 (5)0.0267 (6)−0.0011 (4)
O20.0626 (7)0.0192 (4)0.0374 (5)0.0041 (4)0.0054 (5)0.0011 (4)
O30.0602 (10)0.0177 (6)0.0315 (7)0.0000.0172 (6)0.000
O40.0566 (9)0.0226 (6)0.0296 (7)0.0000.0179 (6)0.000
O50.0467 (8)0.0295 (7)0.0262 (6)0.0000.0034 (6)0.000
N10.0353 (8)0.0203 (7)0.0220 (6)0.0000.0081 (6)0.000
C10.0486 (12)0.0344 (10)0.0217 (8)0.0000.0080 (7)0.000
C20.0422 (8)0.0253 (6)0.0265 (6)0.0000 (5)0.0059 (5)0.0048 (5)
C30.0303 (6)0.0192 (5)0.0267 (5)0.0018 (4)0.0036 (4)0.0007 (4)
C40.0410 (7)0.0210 (6)0.0312 (6)0.0050 (5)0.0048 (5)−0.0027 (5)
Mg1—O3i2.0197 (14)O5—H50.89 (2)
Mg1—O32.0197 (14)N1—C3ii1.3401 (13)
Mg1—O4i2.0601 (15)N1—C31.3401 (13)
Mg1—O42.0601 (15)N1—H1A0.89 (3)
Mg1—O5i2.1375 (16)C1—C21.3897 (16)
Mg1—O52.1375 (16)C1—C2ii1.3897 (16)
O1—C41.2422 (17)C1—H10.9300
O2—C41.2406 (16)C2—C31.3788 (17)
O3—H30.862 (19)C2—H20.9300
O4—H40.85 (2)C3—C41.5208 (17)
O3i—Mg1—O3180.0Mg1—O5—H5109.1 (13)
O3i—Mg1—O4i90.0C3ii—N1—C3125.46 (15)
O3—Mg1—O4i90.0C3ii—N1—H1A117.27 (8)
O3i—Mg1—O490.0C3—N1—H1A117.27 (8)
O3—Mg1—O490.0C2—C1—C2ii120.82 (17)
O4i—Mg1—O4180.00 (8)C2—C1—H1119.6
O3i—Mg1—O5i90.0C2ii—C1—H1119.6
O3—Mg1—O5i90.0C3—C2—C1118.87 (12)
O4i—Mg1—O5i91.46 (6)C3—C2—H2120.6
O4—Mg1—O5i88.54 (6)C1—C2—H2120.6
O3i—Mg1—O590.0N1—C3—C2117.99 (12)
O3—Mg1—O590.0N1—C3—C4114.17 (11)
O4i—Mg1—O588.54 (6)C2—C3—C4127.84 (11)
O4—Mg1—O591.46 (6)O2—C4—O1128.49 (12)
O5i—Mg1—O5180.00 (8)O2—C4—C3117.37 (12)
Mg1—O3—H3126.6 (13)O1—C4—C3114.14 (11)
Mg1—O4—H4125.5 (14)
C2ii—C1—C2—C3−0.3 (3)N1—C3—C4—O2−178.85 (14)
C3ii—N1—C3—C2−0.3 (3)C2—C3—C4—O21.3 (2)
C3ii—N1—C3—C4179.77 (12)N1—C3—C4—O11.23 (19)
C1—C2—C3—N10.3 (2)C2—C3—C4—O1−178.66 (14)
C1—C2—C3—C4−179.83 (15)
D—H···AD—HH···AD···AD—H···A
O3—H3···O10.862 (19)1.834 (19)2.6940 (14)174.6 (19)
O4—H4···O20.85 (2)1.93 (2)2.7758 (14)171 (2)
O5—H5···O2iii0.89 (2)1.92 (2)2.7960 (14)167.5 (19)
C1—H1···O5iv0.932.583.308 (3)136
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H3⋯O10.862 (19)1.834 (19)2.6940 (14)174.6 (19)
O4—H4⋯O20.85 (2)1.93 (2)2.7758 (14)171 (2)
O5—H5⋯O2i0.89 (2)1.92 (2)2.7960 (14)167.5 (19)
C1—H1⋯O5ii0.932.583.308 (3)136

Symmetry codes: (i) ; (ii) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Group 2 metal salts of pyromellitic acid: [Mg(H2O)6](C10H4O8) and [Ba(C10H4O8)(H2O)5].

Authors:  Sophie H Dale; Mark R J Elsegood; Sarita Kainth
Journal:  Acta Crystallogr C       Date:  2003-11-08       Impact factor: 1.172

  2 in total
  3 in total

1.  Benzene-1,3-diammonium bis-(pyridine-2,6-dicarboxyl-ato-κO,N,O)cobaltate(II) penta-hydrate.

Authors:  Hoda Pasdar; Saghi Sadat Kashani; Reza Ghiasi; Hossein Aghabozorg; Behrouz Notash
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-03-31

2.  Propane-1,2-diaminium tris-(pyridine-2,6-dicarboxyl-ato-κO,N,O)zirconate(IV) trihydrate.

Authors:  Hoda Pasdar; Shahrzad Shakiba; Hossein Aghabozorg; Behrouz Notash
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-04-13

3.  Bis(2-amino-6-methyl-pyridinium) tris-(pyridine-2,6-dicarboxyl-ato)zirconate(IV) dihydrate.

Authors:  Hoda Pasdar; Ali Ebdam; Hossein Aghabozorg; Behrouz Notash
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-02-02
  3 in total

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