Literature DB >> 21589145

2-(2-Oxothio-lan-3-yl)isoindoline-1,3-dione.

Abdul Rauf Raza, Aisha Saddiqa, M Nawaz Tahir, Sadia Saddiq.   

Abstract

In the title compound, C(12)H(9)NO(3)S, the isoindoline-1,3-dione group is almost planar, with an r.m.s. deviation of 0.020 Å, whereas the heterocyclic ring approximates to an envelope with the methyl-ene group not adjacent to the S atom in the flap position. A short intra-molecular C-H⋯O contact generates an S(6) ring motif. In the crystal structure, weak aromatic π-π stacking inter-actions occur between the centroids of the benzene rings at a distance of 3.558 (2) Å.

Entities:  

Year:  2010        PMID: 21589145      PMCID: PMC3009250          DOI: 10.1107/S1600536810043400

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to isocoumarins, see: Hussain et al. (2001 ▶); Lee et al. (2001 ▶); Nozawa et al. (1981 ▶). For related crystal structures, see: Beck et al. (2007 ▶); Freer & Kraut (1965 ▶). For graph-set notation, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C12H9NO3S M = 247.26 Monoclinic, a = 8.0601 (13) Å b = 6.9860 (11) Å c = 19.709 (3) Å β = 99.296 (9)° V = 1095.2 (3) Å3 Z = 4 Mo Kα radiation μ = 0.29 mm−1 T = 296 K 0.24 × 0.10 × 0.08 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.968, T max = 0.978 14781 measured reflections 1934 independent reflections 1105 reflections with I > 2σ(I) R int = 0.093

Refinement

R[F 2 > 2σ(F 2)] = 0.055 wR(F 2) = 0.151 S = 1.02 1934 reflections 154 parameters H-atom parameters constrained Δρmax = 0.40 e Å−3 Δρmin = −0.31 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810043400/hb5705sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810043400/hb5705Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H9NO3SF(000) = 512
Mr = 247.26Dx = 1.500 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 1105 reflections
a = 8.0601 (13) Åθ = 2.1–25.0°
b = 6.9860 (11) ŵ = 0.29 mm1
c = 19.709 (3) ÅT = 296 K
β = 99.296 (9)°Needle, colourless
V = 1095.2 (3) Å30.24 × 0.10 × 0.08 mm
Z = 4
Bruker Kappa APEXII CCD diffractometer1934 independent reflections
Radiation source: fine-focus sealed tube1105 reflections with I > 2σ(I)
graphiteRint = 0.093
Detector resolution: 8.2 pixels mm-1θmax = 25.0°, θmin = 2.1°
ω scansh = −9→9
Absorption correction: multi-scan (SADABS; Bruker, 2005)k = −8→8
Tmin = 0.968, Tmax = 0.978l = −23→23
14781 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.055Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.151H-atom parameters constrained
S = 1.02w = 1/[σ2(Fo2) + (0.0651P)2 + 0.3208P] where P = (Fo2 + 2Fc2)/3
1934 reflections(Δ/σ)max < 0.001
154 parametersΔρmax = 0.40 e Å3
0 restraintsΔρmin = −0.31 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S11.27260 (14)0.17317 (15)0.21281 (6)0.0666 (4)
O11.0043 (4)0.2417 (4)0.01824 (15)0.0690 (11)
O20.6135 (4)0.3134 (4)0.15927 (16)0.0694 (11)
O31.0050 (3)−0.0304 (4)0.16664 (14)0.0619 (11)
N10.8391 (4)0.2932 (4)0.10189 (16)0.0463 (11)
C10.8677 (5)0.2558 (5)0.0348 (2)0.0496 (14)
C20.6994 (5)0.2417 (5)−0.0077 (2)0.0445 (14)
C30.6538 (6)0.2073 (5)−0.0763 (2)0.0600 (16)
C40.4821 (7)0.1996 (6)−0.1015 (2)0.0724 (19)
C50.3638 (6)0.2223 (6)−0.0585 (3)0.073 (2)
C60.4108 (5)0.2546 (5)0.0105 (3)0.0580 (16)
C70.5801 (4)0.2646 (5)0.0350 (2)0.0469 (14)
C80.6676 (5)0.2926 (5)0.1061 (2)0.0486 (14)
C90.9686 (4)0.3132 (5)0.1613 (2)0.0492 (12)
C101.0927 (5)0.4715 (5)0.1568 (2)0.0537 (16)
C111.2487 (5)0.4309 (5)0.2093 (2)0.0553 (16)
C121.0662 (5)0.1259 (5)0.17663 (18)0.0444 (12)
H30.733620.18977−0.104910.0718*
H40.446400.17879−0.148210.0870*
H50.250060.21559−0.076770.0880*
H60.331500.269150.039560.0696*
H90.912660.340700.200850.0591*
H10A1.044370.593740.166490.0646*
H10B1.121570.476520.110920.0646*
H11A1.235210.480810.254020.0667*
H11B1.346700.490280.195380.0667*
U11U22U33U12U13U23
S10.0529 (7)0.0572 (7)0.0828 (9)0.0032 (5)−0.0094 (6)0.0022 (6)
O10.0456 (18)0.086 (2)0.078 (2)−0.0061 (15)0.0178 (16)−0.0142 (16)
O20.0619 (19)0.075 (2)0.076 (2)−0.0060 (16)0.0255 (17)−0.0102 (16)
O30.0674 (19)0.0400 (16)0.078 (2)−0.0076 (14)0.0106 (16)−0.0004 (14)
N10.0420 (19)0.0466 (18)0.049 (2)0.0011 (14)0.0038 (16)0.0021 (15)
C10.040 (2)0.042 (2)0.067 (3)−0.0027 (18)0.009 (2)0.0031 (18)
C20.043 (2)0.037 (2)0.052 (3)−0.0082 (16)0.003 (2)0.0049 (17)
C30.069 (3)0.051 (2)0.058 (3)−0.013 (2)0.004 (2)0.009 (2)
C40.091 (4)0.056 (3)0.059 (3)−0.017 (3)−0.022 (3)0.010 (2)
C50.054 (3)0.044 (3)0.111 (5)−0.006 (2)−0.019 (3)0.018 (3)
C60.041 (2)0.037 (2)0.092 (4)−0.0023 (18)−0.001 (2)0.004 (2)
C70.039 (2)0.029 (2)0.069 (3)−0.0025 (16)−0.002 (2)0.0051 (17)
C80.042 (2)0.038 (2)0.068 (3)−0.0018 (17)0.016 (2)0.0010 (19)
C90.046 (2)0.048 (2)0.053 (2)−0.0043 (18)0.006 (2)−0.0034 (19)
C100.061 (3)0.041 (2)0.058 (3)−0.005 (2)0.006 (2)−0.0018 (18)
C110.056 (3)0.053 (2)0.056 (3)−0.007 (2)0.006 (2)−0.009 (2)
C120.048 (2)0.042 (2)0.044 (2)−0.0006 (18)0.0098 (19)0.0016 (17)
S1—C111.811 (4)C6—C71.374 (6)
S1—C121.733 (4)C7—C81.477 (5)
O1—C11.202 (5)C9—C101.503 (5)
O2—C81.207 (5)C9—C121.532 (5)
O3—C121.201 (5)C10—C111.521 (6)
N1—C11.403 (5)C3—H30.9300
N1—C81.398 (5)C4—H40.9300
N1—C91.444 (5)C5—H50.9300
C1—C21.478 (6)C6—H60.9300
C2—C31.364 (5)C9—H90.9800
C2—C71.386 (5)C10—H10A0.9700
C3—C41.394 (7)C10—H10B0.9700
C4—C51.383 (7)C11—H11A0.9700
C5—C61.370 (8)C11—H11B0.9700
C11—S1—C1294.86 (18)S1—C12—O3125.6 (3)
C1—N1—C8111.7 (3)S1—C12—C9110.3 (2)
C1—N1—C9125.1 (3)O3—C12—C9124.1 (3)
C8—N1—C9123.0 (3)C2—C3—H3121.00
O1—C1—N1124.6 (4)C4—C3—H3122.00
O1—C1—C2129.6 (4)C3—C4—H4119.00
N1—C1—C2105.7 (3)C5—C4—H4119.00
C1—C2—C3130.5 (4)C4—C5—H5119.00
C1—C2—C7108.2 (3)C6—C5—H5119.00
C3—C2—C7121.3 (4)C5—C6—H6121.00
C2—C3—C4116.9 (4)C7—C6—H6121.00
C3—C4—C5121.4 (4)N1—C9—H9107.00
C4—C5—C6121.3 (5)C10—C9—H9107.00
C5—C6—C7117.2 (4)C12—C9—H9107.00
C2—C7—C6121.9 (4)C9—C10—H10A110.00
C2—C7—C8108.7 (3)C9—C10—H10B110.00
C6—C7—C8129.5 (4)C11—C10—H10A110.00
O2—C8—N1123.4 (4)C11—C10—H10B110.00
O2—C8—C7131.0 (4)H10A—C10—H10B108.00
N1—C8—C7105.6 (3)S1—C11—H11A110.00
N1—C9—C10115.1 (3)S1—C11—H11B110.00
N1—C9—C12111.0 (3)C10—C11—H11A110.00
C10—C9—C12108.3 (3)C10—C11—H11B110.00
C9—C10—C11107.9 (3)H11A—C11—H11B109.00
S1—C11—C10106.4 (2)
C12—S1—C11—C10−19.3 (3)C1—C2—C7—C6−178.6 (3)
C11—S1—C12—O3−178.8 (4)C1—C2—C7—C8−0.4 (4)
C11—S1—C12—C9−0.9 (3)C3—C2—C7—C6−0.3 (6)
C8—N1—C1—O1−177.2 (3)C3—C2—C7—C8178.0 (3)
C8—N1—C1—C23.5 (4)C2—C3—C4—C5−1.2 (6)
C9—N1—C1—O1−2.4 (6)C3—C4—C5—C60.5 (6)
C9—N1—C1—C2178.3 (3)C4—C5—C6—C70.4 (6)
C1—N1—C8—O2176.8 (3)C5—C6—C7—C2−0.5 (5)
C1—N1—C8—C7−3.8 (4)C5—C6—C7—C8−178.3 (4)
C9—N1—C8—O21.9 (5)C2—C7—C8—O2−178.1 (4)
C9—N1—C8—C7−178.7 (3)C2—C7—C8—N12.5 (4)
C1—N1—C9—C1059.6 (4)C6—C7—C8—O2−0.1 (7)
C1—N1—C9—C12−63.9 (4)C6—C7—C8—N1−179.5 (4)
C8—N1—C9—C10−126.2 (3)N1—C9—C10—C11−160.7 (3)
C8—N1—C9—C12110.3 (4)C12—C9—C10—C11−35.8 (4)
O1—C1—C2—C30.8 (7)N1—C9—C12—S1148.7 (2)
O1—C1—C2—C7178.9 (4)N1—C9—C12—O3−33.4 (5)
N1—C1—C2—C3−180.0 (4)C10—C9—C12—S121.4 (4)
N1—C1—C2—C7−1.8 (4)C10—C9—C12—O3−160.7 (4)
C1—C2—C3—C4179.0 (4)C9—C10—C11—S134.4 (4)
C7—C2—C3—C41.1 (5)
D—H···AD—HH···AD···AD—H···A
C10—H10B···O10.972.523.149 (5)122
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C10—H10B⋯O10.972.523.149 (5)122
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