Literature DB >> 21589092

(5-n-Heptyl-2-hydroxymethyl-1,3-dioxan-2-yl)methanol.

Xian-You Yuan, Min Zhang, Seik Weng Ng.   

Abstract

In the title compound, C(13)H(26)O(4), the dioxane rings adopts a chair conformation; the n-heptyl chain occupies an equatorial position. In the crystal, mol-ecules are connected by O-H⋯O hydrogen bonds into a zigzag chain running along the a axis, giving rise to a herringbone pattern. There are two independent mol-ecules in the asymmetric unit.

Entities:  

Year:  2010        PMID: 21589092      PMCID: PMC3009154          DOI: 10.1107/S1600536810041413

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a related structure, see: Luo et al. (2008 ▶).

Experimental

Crystal data

C13H26O4 M = 246.34 Monoclinic, a = 5.8030 (4) Å b = 54.017 (4) Å c = 9.1018 (6) Å β = 92.938 (1)° V = 2849.3 (3) Å3 Z = 8 Mo Kα radiation μ = 0.08 mm−1 T = 163 K 0.40 × 0.35 × 0.15 mm

Data collection

Bruker SMART APEX diffractometer 14414 measured reflections 6156 independent reflections 3242 reflections with I > 2σ(I) R int = 0.077

Refinement

R[F 2 > 2σ(F 2)] = 0.077 wR(F 2) = 0.201 S = 1.05 6156 reflections 311 parameters H-atom parameters constrained Δρmax = 0.32 e Å−3 Δρmin = −0.32 e Å−3 Data collection: SMART (Bruker, 2003 ▶); cell refinement: SAINT (Bruker, 2003 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810041413/bt5378sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810041413/bt5378Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H26O4F(000) = 1088
Mr = 246.34Dx = 1.149 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 2633 reflections
a = 5.8030 (4) Åθ = 2.4–26.3°
b = 54.017 (4) ŵ = 0.08 mm1
c = 9.1018 (6) ÅT = 163 K
β = 92.938 (1)°Prism, colorless
V = 2849.3 (3) Å30.40 × 0.35 × 0.15 mm
Z = 8
Bruker SMART APEX diffractometer3242 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.077
graphiteθmax = 27.1°, θmin = 2.3°
ω scansh = −6→7
14414 measured reflectionsk = −58→69
6156 independent reflectionsl = −10→11
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.077Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.201H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0842P)2] where P = (Fo2 + 2Fc2)/3
6156 reflections(Δ/σ)max = 0.001
311 parametersΔρmax = 0.32 e Å3
0 restraintsΔρmin = −0.32 e Å3
xyzUiso*/Ueq
O10.2272 (3)0.13631 (4)0.3678 (2)0.0193 (5)
O2−0.0529 (4)0.13323 (4)0.1752 (2)0.0230 (5)
O3−0.4134 (3)0.19510 (4)0.3742 (3)0.0243 (6)
H3−0.34890.20880.36150.036*
O40.1374 (4)0.20487 (4)0.3614 (3)0.0281 (6)
H40.27950.20220.37470.042*
O50.1796 (4)0.31378 (4)0.4361 (2)0.0247 (5)
O6−0.1028 (3)0.32156 (4)0.2493 (2)0.0202 (5)
O7−0.3125 (4)0.24297 (4)0.3030 (3)0.0254 (6)
H7−0.45180.24680.28680.038*
O80.2389 (4)0.25210 (4)0.2915 (3)0.0261 (6)
H80.16820.23870.30260.039*
C10.0843 (5)0.15190 (5)0.4533 (3)0.0167 (7)
H1A0.18310.16350.51240.020*
H1B−0.00090.14150.52200.020*
C2−0.0868 (5)0.16654 (5)0.3557 (3)0.0157 (7)
C3−0.2132 (5)0.14847 (5)0.2508 (4)0.0212 (7)
H3A−0.31560.13780.30700.025*
H3B−0.31070.15790.17780.025*
C40.0368 (5)0.18620 (6)0.2664 (4)0.0224 (7)
H4A0.15900.17820.21100.027*
H4B−0.07500.19400.19460.027*
C5−0.2576 (5)0.17895 (6)0.4544 (4)0.0208 (7)
H5A−0.34710.16600.50350.025*
H5B−0.17110.18850.53180.025*
C60.0909 (5)0.12001 (5)0.2773 (3)0.0184 (7)
H6A−0.00540.10940.33990.022*
C70.2514 (6)0.10397 (6)0.1932 (4)0.0243 (8)
H7A0.35310.11470.13690.029*
H7B0.15890.09370.12180.029*
C80.4005 (5)0.08698 (6)0.2924 (4)0.0231 (8)
H8A0.48990.09720.36550.028*
H8B0.29880.07590.34690.028*
C90.5668 (6)0.07125 (6)0.2086 (4)0.0270 (8)
H9A0.66750.08230.15340.032*
H9B0.47740.06090.13630.032*
C100.7177 (6)0.05444 (6)0.3086 (4)0.0278 (8)
H10A0.80780.06480.38030.033*
H10B0.61660.04360.36470.033*
C110.8834 (6)0.03837 (6)0.2267 (4)0.0312 (9)
H11A0.79340.02780.15610.037*
H11B0.98340.04920.16950.037*
C121.0346 (6)0.02205 (7)0.3272 (5)0.0397 (10)
H12A0.93450.01130.38510.048*
H12B1.12540.03270.39730.048*
C131.1999 (7)0.00570 (7)0.2452 (5)0.0547 (13)
H13A1.2931−0.00420.31610.082*
H13B1.30150.01610.18880.082*
H13C1.1113−0.00530.17810.082*
C140.0664 (6)0.29187 (6)0.4811 (4)0.0220 (7)
H14A−0.03660.29600.56100.026*
H14B0.18300.27990.52030.026*
C15−0.0747 (5)0.28004 (5)0.3539 (3)0.0169 (7)
C16−0.2343 (5)0.30020 (5)0.2872 (4)0.0211 (7)
H16A−0.31860.29370.19810.025*
H16B−0.34910.30490.35890.025*
C17−0.2122 (5)0.25857 (5)0.4161 (3)0.0197 (7)
H17A−0.10880.24860.48240.024*
H17B−0.33630.26530.47520.024*
C180.0813 (5)0.27046 (5)0.2361 (4)0.0198 (7)
H18A−0.01560.26340.15380.024*
H18B0.16910.28450.19690.024*
C190.0221 (5)0.33143 (5)0.3746 (4)0.0208 (7)
H19A−0.08800.33650.45000.025*
C200.1590 (6)0.35353 (5)0.3288 (4)0.0241 (8)
H20A0.26480.34820.25290.029*
H20B0.25500.35940.41490.029*
C210.0146 (6)0.37513 (6)0.2682 (4)0.0258 (8)
H21A−0.06940.38260.34920.031*
H21B−0.10160.36880.19420.031*
C220.1565 (6)0.39521 (6)0.1974 (4)0.0243 (8)
H22A0.23390.38780.11340.029*
H22B0.04990.40820.15760.029*
C230.3386 (6)0.40747 (6)0.2992 (4)0.0276 (8)
H23A0.44170.39450.34270.033*
H23B0.26130.41560.38060.033*
C240.4845 (6)0.42659 (6)0.2228 (4)0.0292 (8)
H24A0.56210.41840.14140.035*
H24B0.38160.43960.17930.035*
C250.6657 (6)0.43875 (6)0.3251 (4)0.0333 (9)
H25A0.76750.42570.36900.040*
H25B0.58750.44690.40610.040*
C260.8145 (7)0.45783 (7)0.2509 (5)0.0425 (10)
H26A0.92620.46490.32370.064*
H26B0.71600.47110.20890.064*
H26C0.89690.44980.17240.064*
U11U22U33U12U13U23
O10.0133 (11)0.0229 (11)0.0217 (12)0.0027 (9)0.0007 (9)−0.0051 (10)
O20.0214 (12)0.0264 (12)0.0208 (13)0.0071 (10)−0.0022 (9)−0.0041 (10)
O30.0139 (11)0.0199 (12)0.0389 (15)0.0018 (9)0.0005 (10)0.0019 (11)
O40.0125 (12)0.0232 (12)0.0488 (16)−0.0011 (10)0.0019 (11)−0.0060 (11)
O50.0221 (12)0.0233 (12)0.0279 (14)−0.0045 (10)−0.0058 (10)0.0055 (10)
O60.0183 (11)0.0230 (11)0.0190 (12)−0.0029 (9)−0.0038 (9)−0.0013 (10)
O70.0126 (11)0.0272 (12)0.0363 (15)−0.0046 (10)0.0006 (10)−0.0030 (11)
O80.0164 (12)0.0223 (12)0.0397 (15)0.0025 (9)0.0032 (10)0.0043 (11)
C10.0169 (16)0.0177 (16)0.0155 (17)0.0027 (13)0.0005 (12)−0.0030 (13)
C20.0099 (15)0.0187 (16)0.0185 (17)0.0020 (12)0.0000 (12)−0.0003 (13)
C30.0155 (16)0.0214 (16)0.0268 (19)0.0025 (13)0.0017 (13)−0.0042 (14)
C40.0150 (16)0.0236 (17)0.029 (2)−0.0029 (14)0.0016 (14)−0.0007 (15)
C50.0166 (17)0.0214 (16)0.0245 (19)0.0038 (13)0.0018 (13)0.0008 (14)
C60.0182 (17)0.0201 (16)0.0167 (17)0.0025 (13)−0.0005 (13)−0.0025 (14)
C70.0239 (18)0.0271 (18)0.0220 (19)0.0021 (14)0.0018 (14)−0.0042 (15)
C80.0229 (18)0.0214 (17)0.025 (2)0.0039 (14)0.0027 (14)−0.0019 (14)
C90.0276 (19)0.0283 (18)0.026 (2)0.0039 (15)0.0046 (15)−0.0028 (15)
C100.0253 (19)0.0220 (17)0.036 (2)0.0049 (15)0.0012 (16)−0.0001 (16)
C110.0252 (19)0.0247 (18)0.044 (2)0.0045 (15)0.0056 (17)−0.0003 (17)
C120.028 (2)0.030 (2)0.061 (3)0.0070 (16)0.0023 (19)0.0008 (19)
C130.036 (2)0.042 (2)0.087 (4)0.015 (2)0.015 (2)0.003 (2)
C140.0246 (18)0.0225 (17)0.0186 (18)−0.0003 (14)−0.0010 (14)0.0023 (14)
C150.0129 (15)0.0190 (16)0.0186 (17)−0.0002 (13)−0.0007 (12)0.0028 (13)
C160.0145 (16)0.0221 (17)0.0268 (19)−0.0019 (13)0.0022 (13)0.0014 (14)
C170.0157 (16)0.0213 (16)0.0225 (19)−0.0008 (13)0.0051 (13)0.0022 (14)
C180.0130 (16)0.0189 (16)0.0276 (19)0.0016 (13)0.0030 (13)0.0016 (14)
C190.0203 (17)0.0203 (17)0.0214 (18)−0.0009 (13)−0.0036 (13)−0.0030 (14)
C200.0266 (18)0.0213 (17)0.0244 (19)0.0001 (14)−0.0003 (14)0.0026 (14)
C210.0263 (19)0.0203 (17)0.031 (2)−0.0016 (14)0.0005 (15)0.0009 (15)
C220.0296 (19)0.0197 (17)0.0236 (19)−0.0011 (14)0.0030 (15)0.0017 (14)
C230.033 (2)0.0254 (18)0.025 (2)−0.0035 (15)0.0024 (15)0.0036 (15)
C240.032 (2)0.0276 (19)0.028 (2)0.0004 (16)0.0066 (16)0.0041 (16)
C250.032 (2)0.0304 (19)0.037 (2)−0.0052 (16)0.0015 (17)0.0010 (17)
C260.040 (2)0.034 (2)0.054 (3)−0.0042 (18)0.009 (2)0.0079 (19)
O1—C61.418 (4)C11—H11A0.9900
O1—C11.438 (3)C11—H11B0.9900
O2—C61.411 (4)C12—C131.527 (5)
O2—C31.443 (3)C12—H12A0.9900
O3—C51.430 (4)C12—H12B0.9900
O3—H30.8400C13—H13A0.9800
O4—C41.433 (4)C13—H13B0.9800
O4—H40.8400C13—H13C0.9800
O5—C191.417 (4)C14—C151.524 (4)
O5—C141.423 (3)C14—H14A0.9900
O6—C191.423 (4)C14—H14B0.9900
O6—C161.435 (3)C15—C181.529 (4)
O7—C171.431 (4)C15—C171.533 (4)
O7—H70.8400C15—C161.534 (4)
O8—C181.424 (4)C16—H16A0.9900
O8—H80.8400C16—H16B0.9900
C1—C21.520 (4)C17—H17A0.9900
C1—H1A0.9900C17—H17B0.9900
C1—H1B0.9900C18—H18A0.9900
C2—C31.526 (4)C18—H18B0.9900
C2—C51.527 (4)C19—C201.505 (4)
C2—C41.537 (4)C19—H19A1.0000
C3—H3A0.9900C20—C211.523 (4)
C3—H3B0.9900C20—H20A0.9900
C4—H4A0.9900C20—H20B0.9900
C4—H4B0.9900C21—C221.525 (4)
C5—H5A0.9900C21—H21A0.9900
C5—H5B0.9900C21—H21B0.9900
C6—C71.509 (4)C22—C231.521 (4)
C6—H6A1.0000C22—H22A0.9900
C7—C81.525 (4)C22—H22B0.9900
C7—H7A0.9900C23—C241.526 (4)
C7—H7B0.9900C23—H23A0.9900
C8—C91.520 (4)C23—H23B0.9900
C8—H8A0.9900C24—C251.518 (5)
C8—H8B0.9900C24—H24A0.9900
C9—C101.529 (4)C24—H24B0.9900
C9—H9A0.9900C25—C261.524 (5)
C9—H9B0.9900C25—H25A0.9900
C10—C111.519 (4)C25—H25B0.9900
C10—H10A0.9900C26—H26A0.9800
C10—H10B0.9900C26—H26B0.9800
C11—C121.517 (5)C26—H26C0.9800
C6—O1—C1110.9 (2)H13A—C13—H13B109.5
C6—O2—C3110.4 (2)C12—C13—H13C109.5
C5—O3—H3109.5H13A—C13—H13C109.5
C4—O4—H4109.5H13B—C13—H13C109.5
C19—O5—C14112.0 (2)O5—C14—C15111.6 (2)
C19—O6—C16111.3 (2)O5—C14—H14A109.3
C17—O7—H7109.5C15—C14—H14A109.3
C18—O8—H8109.5O5—C14—H14B109.3
O1—C1—C2111.5 (2)C15—C14—H14B109.3
O1—C1—H1A109.3H14A—C14—H14B108.0
C2—C1—H1A109.3C14—C15—C18111.1 (2)
O1—C1—H1B109.3C14—C15—C17107.8 (2)
C2—C1—H1B109.3C18—C15—C17110.0 (2)
H1A—C1—H1B108.0C14—C15—C16107.1 (2)
C1—C2—C3108.1 (2)C18—C15—C16109.2 (3)
C1—C2—C5108.0 (2)C17—C15—C16111.6 (2)
C3—C2—C5110.1 (2)O6—C16—C15110.4 (2)
C1—C2—C4111.1 (2)O6—C16—H16A109.6
C3—C2—C4109.5 (2)C15—C16—H16A109.6
C5—C2—C4110.0 (2)O6—C16—H16B109.6
O2—C3—C2111.2 (2)C15—C16—H16B109.6
O2—C3—H3A109.4H16A—C16—H16B108.1
C2—C3—H3A109.4O7—C17—C15112.3 (2)
O2—C3—H3B109.4O7—C17—H17A109.1
C2—C3—H3B109.4C15—C17—H17A109.1
H3A—C3—H3B108.0O7—C17—H17B109.1
O4—C4—C2110.8 (3)C15—C17—H17B109.1
O4—C4—H4A109.5H17A—C17—H17B107.9
C2—C4—H4A109.5O8—C18—C15112.3 (3)
O4—C4—H4B109.5O8—C18—H18A109.1
C2—C4—H4B109.5C15—C18—H18A109.1
H4A—C4—H4B108.1O8—C18—H18B109.1
O3—C5—C2112.3 (3)C15—C18—H18B109.1
O3—C5—H5A109.1H18A—C18—H18B107.9
C2—C5—H5A109.1O5—C19—O6110.9 (2)
O3—C5—H5B109.1O5—C19—C20107.7 (2)
C2—C5—H5B109.1O6—C19—C20109.3 (3)
H5A—C5—H5B107.9O5—C19—H19A109.6
O2—C6—O1111.2 (2)O6—C19—H19A109.6
O2—C6—C7108.4 (2)C20—C19—H19A109.6
O1—C6—C7108.1 (2)C19—C20—C21114.8 (3)
O2—C6—H6A109.7C19—C20—H20A108.6
O1—C6—H6A109.7C21—C20—H20A108.6
C7—C6—H6A109.7C19—C20—H20B108.6
C6—C7—C8113.0 (3)C21—C20—H20B108.6
C6—C7—H7A109.0H20A—C20—H20B107.5
C8—C7—H7A109.0C20—C21—C22113.5 (3)
C6—C7—H7B109.0C20—C21—H21A108.9
C8—C7—H7B109.0C22—C21—H21A108.9
H7A—C7—H7B107.8C20—C21—H21B108.9
C9—C8—C7113.3 (3)C22—C21—H21B108.9
C9—C8—H8A108.9H21A—C21—H21B107.7
C7—C8—H8A108.9C23—C22—C21115.2 (3)
C9—C8—H8B108.9C23—C22—H22A108.5
C7—C8—H8B108.9C21—C22—H22A108.5
H8A—C8—H8B107.7C23—C22—H22B108.5
C8—C9—C10113.1 (3)C21—C22—H22B108.5
C8—C9—H9A109.0H22A—C22—H22B107.5
C10—C9—H9B109.0C22—C23—C24113.7 (3)
C8—C9—H9A109.0C22—C23—H23A108.8
C10—C9—H9A109.0C24—C23—H23A108.8
H9A—C9—H9B107.8C22—C23—H23B108.8
C11—C10—C9113.9 (3)C24—C23—H23B108.8
C11—C10—H10A108.8H23A—C23—H23B107.7
C9—C10—H10A108.8C25—C24—C23113.4 (3)
C11—C10—H10B108.8C25—C24—H24A108.9
C9—C10—H10B108.8C23—C24—H24A108.9
H10A—C10—H10B107.7C25—C24—H24B108.9
C12—C11—C10113.4 (3)C23—C24—H24B108.9
C12—C11—H11A108.9H24A—C24—H24B107.7
C10—C11—H11A108.9C24—C25—C26114.3 (3)
C12—C11—H11B108.9C24—C25—H25A108.7
C10—C11—H11B108.9C26—C25—H25A108.7
H11A—C11—H11B107.7C24—C25—H25B108.7
C11—C12—C13113.6 (3)C26—C25—H25B108.7
C11—C12—H12A108.9H25A—C25—H25B107.6
C13—C12—H12A108.9C25—C26—H26A109.5
C11—C12—H12B108.9C25—C26—H26B109.5
C13—C12—H12B108.9H26A—C26—H26B109.5
H12A—C12—H12B107.7C25—C26—H26C109.5
C12—C13—H13A109.5H26A—C26—H26C109.5
C12—C13—H13B109.5H26B—C26—H26C109.5
C6—O1—C1—C2−56.8 (3)C19—O5—C14—C1557.2 (3)
O1—C1—C2—C351.2 (3)O5—C14—C15—C1866.1 (3)
O1—C1—C2—C5170.2 (2)O5—C14—C15—C17−173.3 (2)
O1—C1—C2—C4−69.0 (3)O5—C14—C15—C16−53.1 (3)
C6—O2—C3—C257.9 (3)C19—O6—C16—C15−59.0 (3)
C1—C2—C3—O2−51.7 (3)C14—C15—C16—O653.9 (3)
C5—C2—C3—O2−169.5 (2)C18—C15—C16—O6−66.5 (3)
C4—C2—C3—O269.5 (3)C17—C15—C16—O6171.7 (2)
C1—C2—C4—O4−66.5 (3)C14—C15—C17—O7−167.6 (2)
C3—C2—C4—O4174.1 (2)C18—C15—C17—O7−46.3 (3)
C5—C2—C4—O453.0 (3)C16—C15—C17—O775.1 (3)
C1—C2—C5—O3174.5 (2)C14—C15—C18—O860.5 (3)
C3—C2—C5—O3−67.6 (3)C17—C15—C18—O8−58.8 (3)
C4—C2—C5—O353.1 (3)C16—C15—C18—O8178.4 (2)
C3—O2—C6—O1−62.5 (3)C14—O5—C19—O6−59.6 (3)
C3—O2—C6—C7178.8 (2)C14—O5—C19—C20−179.1 (2)
C1—O1—C6—O262.1 (3)C16—O6—C19—O560.7 (3)
C1—O1—C6—C7−179.0 (2)C16—O6—C19—C20179.3 (2)
O2—C6—C7—C8−174.7 (2)O5—C19—C20—C21−176.5 (3)
O1—C6—C7—C864.6 (3)O6—C19—C20—C2162.9 (3)
C6—C7—C8—C9−178.5 (3)C19—C20—C21—C22−169.5 (3)
C7—C8—C9—C10179.4 (3)C20—C21—C22—C23−60.4 (4)
C8—C9—C10—C11179.4 (3)C21—C22—C23—C24177.3 (3)
C9—C10—C11—C12179.2 (3)C22—C23—C24—C25180.0 (3)
C10—C11—C12—C13179.5 (3)C23—C24—C25—C26179.7 (3)
D—H···AD—HH···AD···AD—H···A
O3—H3···O70.841.942.736 (3)159
O4—H4···O3i0.841.822.656 (3)171
O7—H7···O8ii0.841.822.646 (3)167
O8—H8···O40.841.922.701 (3)155
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H3⋯O70.841.942.736 (3)159
O4—H4⋯O3i0.841.822.656 (3)171
O7—H7⋯O8ii0.841.822.646 (3)167
O8—H8⋯O40.841.922.701 (3)155

Symmetry codes: (i) ; (ii) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  5,5-Bis(hydroxy-meth-yl)-2-phenyl-1,3-dioxane.

Authors:  Yi-Ming Luo; Xing-Ming Liu; Xian-You Yuan; Min Zhang; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-07-19
  2 in total

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