Literature DB >> 21203241

5,5-Bis(hydroxy-meth-yl)-2-phenyl-1,3-dioxane.

Yi-Ming Luo, Xing-Ming Liu, Xian-You Yuan, Min Zhang, Seik Weng Ng.   

Abstract

In the title compound, C(12)H(16)O(4), the 1,3-dioxane ring adopts a chair conformation; the 2-phenyl substitutent occupies an equatorial position. Adjacent mol-ecules are linked by O-H⋯O hydrogen bonds into a chain.

Entities:  

Year:  2008        PMID: 21203241      PMCID: PMC2962161          DOI: 10.1107/S1600536808022046

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystal structures of similar 5-aryl-1,3-dioxanes, see: Al-Mughaid et al. (2003 ▶); Grosu et al. (1997 ▶, 1998 ▶). For applications of this class of compounds, see: Wang et al. (1994 ▶); Yuan et al. (2005 ▶).

Experimental

Crystal data

C12H16O4 M = 224.25 Orthorhombic, a = 6.2654 (4) Å b = 10.4593 (6) Å c = 34.5285 (19) Å V = 2262.7 (2) Å3 Z = 8 Mo Kα radiation μ = 0.10 mm−1 T = 173 (2) K 0.46 × 0.42 × 0.21 mm

Data collection

Bruker SMART 1000 diffractometer Absorption correction: none 5873 measured reflections 1403 independent reflections 1340 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.066 wR(F 2) = 0.184 S = 1.14 1403 reflections 145 parameters H-atom parameters constrained Δρmax = 0.25 e Å−3 Δρmin = −0.41 e Å−3 Data collection: SMART (Bruker, 1997 ▶); cell refinement: SAINT (Bruker, 2003 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: publCIF (Westrip, 2008 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808022046/wn2272sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808022046/wn2272Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H16O4F000 = 960
Mr = 224.25Dx = 1.317 Mg m3
Orthorhombic, C2221Mo Kα radiation λ = 0.71073 Å
Hall symbol: C 2c 2Cell parameters from 4610 reflections
a = 6.2654 (4) Åθ = 2.4–27.0º
b = 10.4593 (6) ŵ = 0.10 mm1
c = 34.5285 (19) ÅT = 173 (2) K
V = 2262.7 (2) Å3Block, colorless
Z = 80.46 × 0.42 × 0.21 mm
Bruker SMART 1000 diffractometer1340 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.031
Monochromator: graphiteθmax = 27.0º
T = 173(2) Kθmin = 2.4º
φ and ω scansh = −7→7
Absorption correction: Nonek = −13→11
5873 measured reflectionsl = −24→44
1403 independent reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.066H-atom parameters constrained
wR(F2) = 0.184  w = 1/[σ2(Fo2) + (0.059P)2 + 10.1519P] where P = (Fo2 + 2Fc2)/3
S = 1.14(Δ/σ)max = 0.001
1403 reflectionsΔρmax = 0.25 e Å3
145 parametersΔρmin = −0.41 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
xyzUiso*/Ueq
O10.8999 (6)0.8806 (3)0.63367 (9)0.0263 (8)
O20.7606 (6)0.6825 (3)0.61705 (10)0.0271 (8)
O30.3975 (7)0.9308 (4)0.71647 (11)0.0410 (10)
H3O0.45840.99560.70730.061*
O40.6297 (7)0.6260 (4)0.71881 (12)0.0509 (12)
H4O0.70730.59410.73610.076*
C10.8416 (8)0.7994 (4)0.60313 (13)0.0223 (10)
H10.73040.84240.58690.027*
C21.0363 (7)0.7728 (4)0.57852 (12)0.0216 (9)
C31.1598 (8)0.8734 (5)0.56544 (13)0.0259 (10)
H31.12720.95830.57320.031*
C41.3332 (8)0.8500 (5)0.54074 (13)0.0283 (11)
H41.41620.91930.53130.034*
C51.3830 (9)0.7266 (5)0.53020 (14)0.0304 (11)
H51.50140.71070.51370.036*
C61.2612 (9)0.6257 (5)0.54353 (13)0.0289 (10)
H61.29660.54060.53640.035*
C71.0871 (8)0.6485 (4)0.56740 (12)0.0225 (10)
H71.00230.57910.57620.027*
C80.7140 (9)0.9151 (4)0.65602 (14)0.0266 (11)
H8A0.61500.96510.63960.032*
H8B0.75780.96980.67800.032*
C90.5640 (8)0.7038 (5)0.63773 (14)0.0282 (11)
H9A0.50980.62140.64790.034*
H9B0.45560.73910.61980.034*
C100.5989 (8)0.7970 (4)0.67141 (12)0.0210 (9)
C110.3785 (8)0.8368 (5)0.68698 (14)0.0287 (11)
H11A0.29130.87130.66550.034*
H11B0.30450.76080.69750.034*
C120.7350 (8)0.7357 (5)0.70299 (13)0.0300 (11)
H12A0.87440.70980.69200.036*
H12B0.76180.79870.72380.036*
U11U22U33U12U13U23
O10.0287 (17)0.0241 (16)0.0261 (15)−0.0100 (16)0.0061 (15)−0.0039 (13)
O20.0310 (18)0.0194 (15)0.0310 (16)−0.0038 (16)0.0109 (15)−0.0052 (13)
O30.045 (2)0.039 (2)0.039 (2)0.001 (2)0.011 (2)−0.0089 (17)
O40.046 (2)0.057 (3)0.049 (2)0.018 (2)0.018 (2)0.031 (2)
C10.027 (2)0.020 (2)0.020 (2)−0.002 (2)0.0019 (18)0.0012 (17)
C20.020 (2)0.026 (2)0.0188 (19)0.0006 (19)−0.0012 (17)−0.0025 (18)
C30.032 (3)0.025 (2)0.0204 (19)−0.001 (2)0.000 (2)−0.0016 (18)
C40.025 (2)0.037 (3)0.024 (2)−0.008 (2)0.0047 (19)0.000 (2)
C50.024 (2)0.042 (3)0.025 (2)0.000 (2)0.006 (2)−0.006 (2)
C60.031 (3)0.030 (2)0.025 (2)0.003 (2)0.000 (2)−0.0081 (19)
C70.030 (2)0.016 (2)0.0219 (19)−0.0002 (19)0.000 (2)0.0024 (16)
C80.038 (3)0.0165 (19)0.025 (2)−0.006 (2)0.007 (2)−0.0024 (18)
C90.027 (3)0.025 (2)0.032 (2)−0.009 (2)0.008 (2)−0.0056 (19)
C100.023 (2)0.0186 (19)0.0213 (19)0.0015 (19)0.0029 (18)0.0017 (16)
C110.023 (2)0.033 (3)0.031 (2)0.006 (2)0.000 (2)0.000 (2)
C120.025 (2)0.042 (3)0.023 (2)0.014 (2)0.004 (2)0.006 (2)
O1—C11.403 (5)C5—H50.9500
O1—C81.443 (6)C6—C71.388 (7)
O2—C11.409 (5)C6—H60.9500
O2—C91.441 (6)C7—H70.9500
O3—C111.421 (6)C8—C101.526 (6)
O3—H3O0.8400C8—H8A0.9900
O4—C121.432 (7)C8—H8B0.9900
O4—H4O0.8399C9—C101.534 (6)
C1—C21.512 (6)C9—H9A0.9900
C1—H11.0000C9—H9B0.9900
C2—C31.382 (7)C10—C121.526 (6)
C2—C71.392 (6)C10—C111.539 (7)
C3—C41.403 (7)C11—H11A0.9900
C3—H30.9500C11—H11B0.9900
C4—C51.377 (7)C12—H12A0.9900
C4—H40.9500C12—H12B0.9900
C5—C61.381 (8)
C1—O1—C8110.1 (4)O1—C8—H8A109.3
C1—O2—C9110.1 (4)C10—C8—H8A109.3
C11—O3—H3O109.0O1—C8—H8B109.3
C12—O4—H4O108.9C10—C8—H8B109.3
O1—C1—O2111.3 (3)H8A—C8—H8B108.0
O1—C1—C2108.9 (4)O2—C9—C10110.6 (4)
O2—C1—C2108.8 (4)O2—C9—H9A109.5
O1—C1—H1109.3C10—C9—H9A109.5
O2—C1—H1109.3O2—C9—H9B109.5
C2—C1—H1109.3C10—C9—H9B109.5
C3—C2—C7119.5 (4)H9A—C9—H9B108.1
C3—C2—C1119.7 (4)C8—C10—C12109.0 (4)
C7—C2—C1120.8 (4)C8—C10—C9108.6 (4)
C2—C3—C4120.0 (5)C12—C10—C9110.7 (4)
C2—C3—H3120.0C8—C10—C11109.1 (4)
C4—C3—H3120.0C12—C10—C11111.4 (4)
C5—C4—C3120.0 (5)C9—C10—C11108.0 (4)
C5—C4—H4120.0O3—C11—C10111.3 (4)
C3—C4—H4120.0O3—C11—H11A109.4
C4—C5—C6120.2 (5)C10—C11—H11A109.4
C4—C5—H5119.9O3—C11—H11B109.4
C6—C5—H5119.9C10—C11—H11B109.4
C5—C6—C7120.1 (5)H11A—C11—H11B108.0
C5—C6—H6120.0O4—C12—C10110.6 (4)
C7—C6—H6120.0O4—C12—H12A109.5
C6—C7—C2120.3 (4)C10—C12—H12A109.5
C6—C7—H7119.9O4—C12—H12B109.5
C2—C7—H7119.9C10—C12—H12B109.5
O1—C8—C10111.4 (4)H12A—C12—H12B108.1
C8—O1—C1—O2−64.2 (5)C1—C2—C7—C6177.4 (4)
C8—O1—C1—C2175.9 (4)C1—O1—C8—C1056.9 (5)
C9—O2—C1—O165.2 (5)C1—O2—C9—C10−58.0 (5)
C9—O2—C1—C2−174.9 (4)O1—C8—C10—C1270.6 (5)
O1—C1—C2—C3−50.6 (5)O1—C8—C10—C9−50.1 (5)
O2—C1—C2—C3−172.1 (4)O1—C8—C10—C11−167.6 (4)
O1—C1—C2—C7132.3 (4)O2—C9—C10—C850.6 (5)
O2—C1—C2—C710.9 (6)O2—C9—C10—C12−69.0 (5)
C7—C2—C3—C40.8 (7)O2—C9—C10—C11168.7 (4)
C1—C2—C3—C4−176.2 (4)C8—C10—C11—O3−57.8 (5)
C2—C3—C4—C5−1.4 (7)C12—C10—C11—O362.5 (5)
C3—C4—C5—C60.7 (8)C9—C10—C11—O3−175.6 (4)
C4—C5—C6—C70.5 (8)C8—C10—C12—O4178.6 (4)
C5—C6—C7—C2−1.0 (7)C9—C10—C12—O4−62.0 (5)
C3—C2—C7—C60.3 (7)C11—C10—C12—O458.2 (5)
D—H···AD—HH···AD···AD—H···A
O4—H4O···O3i0.842.192.644 (6)114
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O4—H4O⋯O3i0.842.192.644 (6)114

Symmetry code: (i) .

  1 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  1 in total
  3 in total

1.  Validation of experimental molecular crystal structures with dispersion-corrected density functional theory calculations.

Authors:  Jacco van de Streek; Marcus A Neumann
Journal:  Acta Crystallogr B       Date:  2010-09-11

2.  (5-n-Hexyl-2-hydroxymethyl-1,3-dioxan-2-yl)methanol.

Authors:  Min Zhang; Xian-You Yuan; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-10-23

3.  (5-n-Heptyl-2-hydroxymethyl-1,3-dioxan-2-yl)methanol.

Authors:  Xian-You Yuan; Min Zhang; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-10-23
  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.