Literature DB >> 21589076

6α-Hy-droxy-5,6-dihydro-salviasperanol.

Safra Izuani Jama Asik, Ibrahim Abdul Razak, Abdul Wahab Salae, Suchada Chantrapromma, Hoong-Kun Fun.   

Abstract

In the title compound, C(20)H(28)O(4), a diterpenoid isolated from the roots of Premna obtusifolia (Verbenaceae), the five-membered ring is in a half-chair conformation. One six-membered ring exists in a twisted-boat conformation while the other is in half-boat conformation. The crystal packing is stabilized by inter-molecular O-H⋯O and weak C-H⋯O inter-actions, generating (001) sheets.

Entities:  

Year:  2010        PMID: 21589076      PMCID: PMC3009237          DOI: 10.1107/S160053681004208X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to Verbenaceae, diterpenes and their bio­log­ical activity, see: Hymavathi et al. (2009 ▶); Bunluepuech & Tewtrakul (2009 ▶); Esquivel et al. (1995 ▶). For ring conformations and ring puckering analysis, see: Cremer & Pople (1975 ▶). For bond-length data, see: Allen et al. (1987 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C20H28O4 M = 332.42 Orthorhombic, a = 6.2767 (2) Å b = 11.7358 (4) Å c = 23.7496 (7) Å V = 1749.45 (10) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 100 K 0.49 × 0.36 × 0.24 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005) T min = 0.959, T max = 0.979 15028 measured reflections 3534 independent reflections 3079 reflections with I > 2σ(I) R int = 0.037

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.107 S = 1.15 3534 reflections 233 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.36 e Å−3 Δρmin = −0.25 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053681004208X/hb5689sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053681004208X/hb5689Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H28O4F(000) = 720
Mr = 332.42Dx = 1.262 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 6222 reflections
a = 6.2767 (2) Åθ = 2.4–32.3°
b = 11.7358 (4) ŵ = 0.09 mm1
c = 23.7496 (7) ÅT = 100 K
V = 1749.45 (10) Å3Block, colourless
Z = 40.49 × 0.36 × 0.24 mm
Bruker SMART APEXII CCD area-detector diffractometer3534 independent reflections
Radiation source: sealed tube3079 reflections with I > 2σ(I)
graphiteRint = 0.037
φ and ω scansθmax = 32.4°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −8→9
Tmin = 0.959, Tmax = 0.979k = −17→16
15028 measured reflectionsl = −34→35
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.041Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.107H atoms treated by a mixture of independent and constrained refinement
S = 1.15w = 1/[σ2(Fo2) + (0.0548P)2 + 0.2019P] where P = (Fo2 + 2Fc2)/3
3534 reflections(Δ/σ)max < 0.001
233 parametersΔρmax = 0.36 e Å3
0 restraintsΔρmin = −0.25 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.7000 (2)0.51248 (9)0.29871 (5)0.0162 (2)
O20.3927 (2)0.76867 (10)0.28241 (5)0.0179 (2)
H1O20.295 (4)0.730 (2)0.2677 (10)0.035 (7)*
O3−0.1349 (2)0.42654 (11)0.15694 (5)0.0212 (3)
H1O3−0.199 (5)0.379 (2)0.1782 (10)0.036 (7)*
O4−0.0204 (2)0.35135 (9)0.26393 (5)0.0175 (2)
H1O4−0.122 (5)0.391 (2)0.2762 (10)0.034 (7)*
C10.6494 (3)0.43356 (13)0.39056 (7)0.0193 (3)
H1A0.72020.36760.37460.023*
H1B0.54070.40580.41620.023*
C20.8142 (3)0.50212 (15)0.42483 (7)0.0231 (3)
H2A0.80180.48110.46420.028*
H2B0.95600.48110.41240.028*
C30.7889 (3)0.63252 (15)0.41961 (7)0.0200 (3)
H3A0.84830.66840.45290.024*
H3B0.86990.65880.38730.024*
C40.5563 (3)0.67027 (13)0.41290 (6)0.0162 (3)
C50.4707 (3)0.62326 (12)0.35629 (6)0.0141 (3)
H5A0.31470.62570.35740.017*
C60.5467 (3)0.69065 (12)0.30370 (6)0.0141 (3)
H6A0.67530.73340.31380.017*
C70.6093 (3)0.59624 (12)0.26148 (6)0.0146 (3)
H7A0.71520.62390.23440.018*
C80.4169 (3)0.54859 (12)0.23181 (6)0.0145 (3)
C90.2902 (3)0.47081 (12)0.26130 (6)0.0144 (3)
C100.5406 (3)0.49841 (12)0.34320 (6)0.0147 (3)
C110.1059 (3)0.43033 (12)0.23603 (6)0.0145 (3)
C120.0464 (3)0.46583 (13)0.18190 (6)0.0155 (3)
C130.1739 (3)0.54262 (13)0.15161 (6)0.0161 (3)
C140.3583 (3)0.58331 (12)0.17780 (6)0.0154 (3)
H14A0.44430.63500.15870.018*
C150.1063 (3)0.57665 (14)0.09244 (6)0.0196 (3)
H15A0.04680.50850.07450.023*
C160.2922 (3)0.61702 (16)0.05555 (7)0.0237 (4)
H16A0.24310.62810.01770.036*
H16B0.40300.56060.05590.036*
H16C0.34680.68760.07000.036*
C17−0.0714 (3)0.66608 (18)0.09427 (8)0.0286 (4)
H17A−0.19050.63640.11500.043*
H17B−0.11530.68410.05660.043*
H17C−0.01970.73380.11240.043*
C180.5432 (3)0.80127 (14)0.41448 (7)0.0205 (3)
H18A0.58620.82800.45100.031*
H18B0.39940.82480.40720.031*
H18C0.63590.83260.38630.031*
C190.4188 (3)0.62608 (15)0.46181 (6)0.0213 (3)
H19A0.47980.65010.49690.032*
H19B0.41360.54440.46060.032*
H19C0.27710.65610.45850.032*
C200.3572 (3)0.42821 (12)0.31863 (6)0.0158 (3)
H20A0.40120.34920.31560.019*
H20B0.23630.43160.34400.019*
U11U22U33U12U13U23
O10.0152 (6)0.0138 (5)0.0197 (5)0.0030 (4)0.0026 (4)0.0022 (4)
O20.0206 (6)0.0119 (5)0.0213 (5)0.0033 (5)−0.0016 (5)0.0015 (4)
O30.0204 (7)0.0206 (5)0.0226 (5)−0.0081 (5)−0.0026 (5)0.0026 (4)
O40.0182 (6)0.0109 (5)0.0234 (5)−0.0024 (4)0.0037 (5)0.0006 (4)
C10.0231 (9)0.0138 (6)0.0211 (6)0.0039 (6)−0.0016 (6)0.0029 (5)
C20.0221 (9)0.0215 (8)0.0257 (7)0.0055 (7)−0.0053 (7)0.0015 (6)
C30.0194 (8)0.0193 (7)0.0214 (7)−0.0001 (7)−0.0029 (6)−0.0001 (6)
C40.0188 (8)0.0126 (6)0.0173 (6)−0.0004 (6)−0.0016 (6)0.0002 (5)
C50.0145 (7)0.0107 (6)0.0171 (6)0.0005 (6)0.0002 (5)0.0004 (5)
C60.0144 (7)0.0111 (6)0.0168 (6)0.0006 (6)−0.0005 (5)−0.0001 (5)
C70.0153 (7)0.0120 (6)0.0165 (6)0.0000 (6)0.0008 (5)0.0015 (5)
C80.0147 (8)0.0115 (6)0.0174 (6)0.0003 (5)0.0014 (5)−0.0010 (5)
C90.0162 (7)0.0102 (6)0.0168 (6)0.0009 (5)0.0023 (6)−0.0011 (5)
C100.0139 (7)0.0122 (6)0.0180 (6)0.0007 (6)0.0007 (5)0.0013 (5)
C110.0161 (7)0.0086 (5)0.0189 (6)−0.0002 (5)0.0037 (5)−0.0002 (5)
C120.0146 (8)0.0120 (6)0.0198 (6)−0.0009 (6)0.0003 (6)−0.0019 (5)
C130.0184 (8)0.0130 (6)0.0168 (6)0.0008 (6)0.0011 (6)−0.0012 (5)
C140.0169 (8)0.0118 (6)0.0174 (6)−0.0009 (6)0.0027 (5)−0.0009 (5)
C150.0236 (9)0.0180 (7)0.0171 (6)−0.0057 (7)−0.0017 (6)0.0002 (5)
C160.0324 (10)0.0202 (7)0.0186 (6)−0.0058 (8)0.0027 (7)−0.0002 (6)
C170.0235 (10)0.0304 (9)0.0318 (8)0.0020 (8)−0.0039 (7)0.0089 (7)
C180.0269 (9)0.0144 (6)0.0203 (6)0.0009 (7)−0.0026 (7)−0.0020 (5)
C190.0262 (9)0.0206 (7)0.0171 (6)0.0005 (7)0.0028 (6)0.0013 (6)
C200.0193 (8)0.0100 (6)0.0181 (6)−0.0015 (6)0.0011 (6)0.0006 (5)
O1—C71.4395 (18)C8—C141.395 (2)
O1—C101.4647 (19)C8—C91.399 (2)
O2—C61.4244 (19)C9—C111.387 (2)
O2—H1O20.84 (3)C9—C201.510 (2)
O3—C121.363 (2)C10—C201.531 (2)
O3—H1O30.85 (3)C11—C121.402 (2)
O4—C111.3882 (18)C12—C131.404 (2)
O4—H1O40.84 (3)C13—C141.398 (2)
C1—C101.520 (2)C13—C151.521 (2)
C1—C21.543 (3)C14—H14A0.9300
C1—H1A0.9700C15—C171.532 (3)
C1—H1B0.9700C15—C161.534 (2)
C2—C31.544 (2)C15—H15A0.9800
C2—H2A0.9700C16—H16A0.9600
C2—H2B0.9700C16—H16B0.9600
C3—C41.535 (3)C16—H16C0.9600
C3—H3A0.9700C17—H17A0.9600
C3—H3B0.9700C17—H17B0.9600
C4—C191.537 (2)C17—H17C0.9600
C4—C181.540 (2)C18—H18A0.9600
C4—C51.549 (2)C18—H18B0.9600
C5—C61.553 (2)C18—H18C0.9600
C5—C101.561 (2)C19—H19A0.9600
C5—H5A0.9800C19—H19B0.9600
C6—C71.545 (2)C19—H19C0.9600
C6—H6A0.9800C20—H20A0.9700
C7—C81.506 (2)C20—H20B0.9700
C7—H7A0.9800
C7—O1—C10104.47 (12)O1—C10—C20107.42 (12)
C6—O2—H1O2107.5 (18)C1—C10—C20110.51 (12)
C12—O3—H1O3110.8 (18)O1—C10—C5103.28 (11)
C11—O4—H1O4103.5 (18)C1—C10—C5116.68 (12)
C10—C1—C2115.50 (13)C20—C10—C5111.72 (13)
C10—C1—H1A108.4C9—C11—O4119.91 (13)
C2—C1—H1A108.4C9—C11—C12121.15 (14)
C10—C1—H1B108.4O4—C11—C12118.93 (14)
C2—C1—H1B108.4O3—C12—C11121.38 (14)
H1A—C1—H1B107.5O3—C12—C13118.05 (13)
C3—C2—C1113.94 (14)C11—C12—C13120.57 (15)
C3—C2—H2A108.8C14—C13—C12117.61 (14)
C1—C2—H2A108.8C14—C13—C15123.51 (14)
C3—C2—H2B108.8C12—C13—C15118.88 (15)
C1—C2—H2B108.8C8—C14—C13121.84 (14)
H2A—C2—H2B107.7C8—C14—H14A119.1
C4—C3—C2113.11 (15)C13—C14—H14A119.1
C4—C3—H3A109.0C13—C15—C17110.89 (14)
C2—C3—H3A109.0C13—C15—C16113.37 (15)
C4—C3—H3B109.0C17—C15—C16111.00 (15)
C2—C3—H3B109.0C13—C15—H15A107.1
H3A—C3—H3B107.8C17—C15—H15A107.1
C3—C4—C19111.00 (13)C16—C15—H15A107.1
C3—C4—C18109.66 (15)C15—C16—H16A109.5
C19—C4—C18106.77 (14)C15—C16—H16B109.5
C3—C4—C5108.49 (13)H16A—C16—H16B109.5
C19—C4—C5109.94 (14)C15—C16—H16C109.5
C18—C4—C5110.99 (13)H16A—C16—H16C109.5
C4—C5—C6114.20 (12)H16B—C16—H16C109.5
C4—C5—C10114.19 (13)C15—C17—H17A109.5
C6—C5—C10103.40 (11)C15—C17—H17B109.5
C4—C5—H5A108.3H17A—C17—H17B109.5
C6—C5—H5A108.3C15—C17—H17C109.5
C10—C5—H5A108.3H17A—C17—H17C109.5
O2—C6—C7113.77 (12)H17B—C17—H17C109.5
O2—C6—C5113.85 (13)C4—C18—H18A109.5
C7—C6—C5103.57 (11)C4—C18—H18B109.5
O2—C6—H6A108.5H18A—C18—H18B109.5
C7—C6—H6A108.5C4—C18—H18C109.5
C5—C6—H6A108.5H18A—C18—H18C109.5
O1—C7—C8110.55 (12)H18B—C18—H18C109.5
O1—C7—C6101.05 (11)C4—C19—H19A109.5
C8—C7—C6111.48 (13)C4—C19—H19B109.5
O1—C7—H7A111.1H19A—C19—H19B109.5
C8—C7—H7A111.1C4—C19—H19C109.5
C6—C7—H7A111.1H19A—C19—H19C109.5
C14—C8—C9120.06 (15)H19B—C19—H19C109.5
C14—C8—C7122.22 (13)C9—C20—C10112.02 (12)
C9—C8—C7117.66 (13)C9—C20—H20A109.2
C11—C9—C8118.76 (14)C10—C20—H20A109.2
C11—C9—C20120.60 (14)C9—C20—H20B109.2
C8—C9—C20120.59 (14)C10—C20—H20B109.2
O1—C10—C1106.44 (13)H20A—C20—H20B107.9
C10—C1—C2—C319.7 (2)C2—C1—C10—C20−171.02 (14)
C1—C2—C3—C433.4 (2)C2—C1—C10—C5−42.0 (2)
C2—C3—C4—C1956.16 (18)C4—C5—C10—O1−106.69 (14)
C2—C3—C4—C18173.89 (13)C6—C5—C10—O117.99 (15)
C2—C3—C4—C5−64.74 (16)C4—C5—C10—C19.7 (2)
C3—C4—C5—C6−77.19 (16)C6—C5—C10—C1134.36 (14)
C19—C4—C5—C6161.26 (14)C4—C5—C10—C20138.16 (14)
C18—C4—C5—C643.4 (2)C6—C5—C10—C20−97.16 (14)
C3—C4—C5—C1041.52 (17)C8—C9—C11—O4178.72 (13)
C19—C4—C5—C10−80.04 (17)C20—C9—C11—O41.1 (2)
C18—C4—C5—C10162.07 (14)C8—C9—C11—C120.2 (2)
C4—C5—C6—O2−100.27 (16)C20—C9—C11—C12−177.48 (14)
C10—C5—C6—O2135.06 (13)C9—C11—C12—O3−179.81 (14)
C4—C5—C6—C7135.67 (14)O4—C11—C12—O31.6 (2)
C10—C5—C6—C711.00 (16)C9—C11—C12—C130.7 (2)
C10—O1—C7—C8−67.98 (14)O4—C11—C12—C13−177.83 (14)
C10—O1—C7—C650.16 (14)O3—C12—C13—C14179.36 (14)
O2—C6—C7—O1−160.80 (13)C11—C12—C13—C14−1.2 (2)
C5—C6—C7—O1−36.69 (15)O3—C12—C13—C15−1.0 (2)
O2—C6—C7—C8−43.34 (17)C11—C12—C13—C15178.49 (14)
C5—C6—C7—C880.77 (14)C9—C8—C14—C130.1 (2)
O1—C7—C8—C14−149.31 (14)C7—C8—C14—C13−176.94 (14)
C6—C7—C8—C1499.13 (16)C12—C13—C14—C80.8 (2)
O1—C7—C8—C933.56 (18)C15—C13—C14—C8−178.89 (15)
C6—C7—C8—C9−77.99 (16)C14—C13—C15—C17−101.80 (19)
C14—C8—C9—C11−0.6 (2)C12—C13—C15—C1778.55 (19)
C7—C8—C9—C11176.60 (13)C14—C13—C15—C1623.9 (2)
C14—C8—C9—C20177.05 (14)C12—C13—C15—C16−155.80 (15)
C7—C8—C9—C20−5.8 (2)C11—C9—C20—C10−169.78 (14)
C7—O1—C10—C1−166.58 (12)C8—C9—C20—C1012.6 (2)
C7—O1—C10—C2075.03 (13)O1—C10—C20—C9−46.44 (16)
C7—O1—C10—C5−43.17 (14)C1—C10—C20—C9−162.17 (13)
C2—C1—C10—O172.64 (16)C5—C10—C20—C966.15 (16)
D—H···AD—HH···AD···AD—H···A
O3—H1O3···O2i0.85 (3)2.01 (3)2.8504 (17)169 (3)
O4—H1O4···O1ii0.84 (3)1.89 (3)2.7089 (16)165 (3)
C18—H18B···O3iii0.962.553.407 (2)149
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H1O3⋯O2i0.85 (3)2.01 (3)2.8504 (17)169 (3)
O4—H1O4⋯O1ii0.84 (3)1.89 (3)2.7089 (16)165 (3)
C18—H18B⋯O3iii0.962.553.407 (2)149

Symmetry codes: (i) ; (ii) ; (iii) .

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