Literature DB >> 21522950

11,12-Dihy-droxy-10,6,8,11,13-icetexapentan-1-one.

Ibrahim Abdul Razak, Suchada Chantrapromma, Abdul Wahab Salae, Hoong-Kun Fun.   

Abstract

THE TITLE COMPOUND [SYSTEMATIC NAME: 14,15-dihy-droxy-7,7-dimethyl-13-(propan-2-yl)tricyclo-[9.4.0.0(3,8)]penta-deca-1(11),3(8),9,12,14-pentaen-4-one], C(20)H(24)O(3), is a new icetexane diterpenoid which was isolated from the roots of Premna obtusifolia (Verbenaceae). The mol-ecule has three fused rings: a cyclo-hexenone, a central cyclo-heptene and a benzene ring. The cyclo-hexenone ring is in an envelope conformation, whereas the cyclo-heptene ring is in a twisted boat conformation. Intra-molecular O-H⋯O hydrogen bonds generate S(5) and S(8) ring motifs. In the crystal, mol-ecules are linked into dimers through O-H⋯O hydrogen bonds. These dimers are arranged in to sheets parallel to the ac plane. C-H⋯O and weak C-H⋯π inter-actions are also present.

Entities:  

Year:  2011        PMID: 21522950      PMCID: PMC3051731          DOI: 10.1107/S1600536810053754

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For details of hydrogen-bond motifs, see: Bernstein et al. (1995 ▶) and for ring conformations, see: Cremer & Pople (1975 ▶). For bond-length data, see: Allen et al. (1987 ▶). For background to Verbenaceae plants and the bioactivity of icetexane, see: Bunluepuech & Tewtrakul (2009 ▶); Hymavathi et al. (2009 ▶); Simmons & Sarpong (2009 ▶). For related structures, see: Asik et al. (2010 ▶); Razak et al. (2010 ▶). For the stability of the temperature controller used in the data collection, see Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C20H24O3 M = 312.39 Monoclinic, a = 25.1090 (9) Å b = 9.4317 (3) Å c = 14.9609 (4) Å β = 108.683 (2)° V = 3356.35 (19) Å3 Z = 8 Mo Kα radiation μ = 0.08 mm−1 T = 100 K 0.60 × 0.32 × 0.28 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.953, T max = 0.977 60861 measured reflections 7404 independent reflections 6198 reflections with I > 2σ(I) R int = 0.029

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.125 S = 1.03 7404 reflections 304 parameters All H-atom parameters refined Δρmax = 0.48 e Å−3 Δρmin = −0.21 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810053754/ng5091sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810053754/ng5091Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H24O3F(000) = 1344
Mr = 312.39Dx = 1.236 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 7404 reflections
a = 25.1090 (9) Åθ = 2.3–35.0°
b = 9.4317 (3) ŵ = 0.08 mm1
c = 14.9609 (4) ÅT = 100 K
β = 108.683 (2)°Needle, yellow
V = 3356.35 (19) Å30.60 × 0.32 × 0.28 mm
Z = 8
Bruker APEXII CCD area-detector diffractometer7404 independent reflections
Radiation source: sealed tube6198 reflections with I > 2σ(I)
graphiteRint = 0.029
φ and ω scansθmax = 35.0°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −38→40
Tmin = 0.953, Tmax = 0.977k = −14→15
60861 measured reflectionsl = −24→24
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.042Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.125All H-atom parameters refined
S = 1.03w = 1/[σ2(Fo2) + (0.0755P)2 + 1.0087P] where P = (Fo2 + 2Fc2)/3
7404 reflections(Δ/σ)max = 0.001
304 parametersΔρmax = 0.48 e Å3
0 restraintsΔρmin = −0.21 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.34135 (2)0.18997 (7)0.45441 (4)0.02727 (13)
O20.22121 (2)0.14713 (6)0.42998 (3)0.02042 (11)
H1O20.2573 (7)0.1602 (17)0.4448 (11)0.048 (4)*
O30.11523 (2)0.24175 (6)0.35038 (3)0.01917 (10)
H1O30.1377 (6)0.2421 (15)0.4088 (10)0.041 (4)*
C10.35660 (3)0.18067 (8)0.38355 (5)0.02009 (13)
C20.40308 (3)0.27126 (10)0.37203 (6)0.02604 (15)
H2A0.4322 (6)0.2867 (15)0.4357 (10)0.038 (3)*
H2B0.3867 (6)0.3655 (16)0.3534 (10)0.040 (3)*
C30.42779 (3)0.20818 (9)0.30042 (6)0.02461 (14)
H3A0.4475 (5)0.1170 (14)0.3235 (9)0.031 (3)*
H3B0.4575 (6)0.2728 (14)0.2903 (9)0.035 (3)*
C40.38338 (3)0.17810 (8)0.20403 (5)0.01959 (12)
C50.33387 (3)0.09795 (7)0.21853 (5)0.01718 (11)
C60.29158 (3)0.04077 (8)0.13478 (5)0.02060 (13)
H6A0.3058 (5)0.0138 (14)0.0831 (9)0.030 (3)*
C70.23475 (3)0.03856 (8)0.11708 (5)0.02164 (13)
H7A0.2123 (5)0.0114 (13)0.0533 (8)0.027 (3)*
C80.20317 (3)0.08458 (7)0.17837 (4)0.01703 (11)
C90.22671 (3)0.07722 (7)0.27714 (4)0.01548 (11)
C100.32690 (3)0.08736 (7)0.30526 (4)0.01682 (11)
C110.19897 (3)0.14125 (7)0.33345 (4)0.01495 (11)
C120.14429 (3)0.19365 (7)0.29375 (4)0.01505 (11)
C130.11813 (3)0.19232 (7)0.19542 (4)0.01734 (11)
C140.14864 (3)0.14018 (8)0.13931 (5)0.01940 (12)
H14A0.1327 (5)0.1435 (13)0.0691 (8)0.029 (3)*
C150.05752 (3)0.24151 (8)0.15458 (5)0.02181 (13)
H15A0.0487 (6)0.3020 (16)0.2035 (10)0.043 (4)*
C160.01786 (3)0.11352 (11)0.13660 (7)0.03109 (18)
H16A0.0246 (6)0.0563 (16)0.0858 (10)0.041 (3)*
H16B−0.0208 (6)0.1452 (14)0.1209 (10)0.038 (3)*
H16C0.0246 (6)0.0539 (16)0.1939 (10)0.043 (4)*
C170.04657 (4)0.32889 (10)0.06447 (7)0.03084 (17)
H17A0.0749 (7)0.4078 (17)0.0732 (11)0.051 (4)*
H17B0.0075 (6)0.3743 (15)0.0475 (10)0.040 (3)*
H17C0.0477 (6)0.2691 (16)0.0078 (10)0.043 (4)*
C180.41211 (4)0.08869 (9)0.14665 (6)0.02682 (15)
H18A0.3865 (6)0.0729 (15)0.0807 (10)0.036 (3)*
H18B0.4239 (6)−0.0029 (16)0.1787 (9)0.039 (3)*
H18C0.4464 (5)0.1393 (14)0.1442 (9)0.034 (3)*
C190.36195 (4)0.31667 (9)0.15095 (7)0.03147 (17)
H19A0.3940 (6)0.3712 (17)0.1398 (11)0.048 (4)*
H19B0.3440 (6)0.3764 (17)0.1896 (10)0.045 (4)*
H19C0.3354 (6)0.2977 (15)0.0893 (10)0.037 (3)*
C200.28082 (3)−0.00267 (7)0.31829 (5)0.01867 (12)
H20A0.2799 (5)−0.0936 (12)0.2844 (8)0.022 (3)*
H20B0.2880 (4)−0.0209 (12)0.3870 (8)0.022 (2)*
U11U22U33U12U13U23
O10.0226 (2)0.0428 (3)0.0156 (2)0.0040 (2)0.00490 (18)−0.0048 (2)
O20.0181 (2)0.0313 (3)0.01191 (19)0.00406 (19)0.00491 (16)0.00394 (17)
O30.0166 (2)0.0264 (2)0.0148 (2)0.00275 (17)0.00536 (16)−0.00128 (17)
C10.0154 (3)0.0273 (3)0.0159 (3)0.0042 (2)0.0026 (2)−0.0018 (2)
C20.0178 (3)0.0336 (4)0.0254 (3)−0.0039 (3)0.0051 (2)−0.0100 (3)
C30.0174 (3)0.0287 (4)0.0284 (3)−0.0002 (2)0.0082 (2)−0.0037 (3)
C40.0206 (3)0.0185 (3)0.0220 (3)0.0002 (2)0.0100 (2)−0.0002 (2)
C50.0178 (3)0.0177 (3)0.0167 (2)0.0012 (2)0.0065 (2)−0.0009 (2)
C60.0210 (3)0.0246 (3)0.0174 (3)0.0002 (2)0.0078 (2)−0.0051 (2)
C70.0210 (3)0.0267 (3)0.0172 (3)0.0002 (2)0.0061 (2)−0.0069 (2)
C80.0169 (2)0.0185 (3)0.0154 (2)−0.0007 (2)0.0048 (2)−0.0037 (2)
C90.0155 (2)0.0155 (2)0.0158 (2)0.00006 (19)0.00547 (19)0.00067 (19)
C100.0154 (2)0.0197 (3)0.0151 (2)0.0027 (2)0.00442 (19)0.0006 (2)
C110.0157 (2)0.0166 (2)0.0127 (2)0.00038 (19)0.00469 (18)0.00190 (19)
C120.0152 (2)0.0160 (2)0.0140 (2)−0.00001 (19)0.00473 (19)−0.00030 (18)
C130.0156 (2)0.0200 (3)0.0147 (2)0.0005 (2)0.00235 (19)−0.0028 (2)
C140.0182 (3)0.0241 (3)0.0143 (2)−0.0001 (2)0.0030 (2)−0.0046 (2)
C150.0183 (3)0.0285 (3)0.0157 (3)0.0051 (2)0.0013 (2)−0.0036 (2)
C160.0164 (3)0.0421 (5)0.0334 (4)−0.0012 (3)0.0060 (3)0.0097 (3)
C170.0259 (4)0.0298 (4)0.0305 (4)0.0017 (3)0.0002 (3)0.0083 (3)
C180.0278 (3)0.0259 (3)0.0338 (4)−0.0016 (3)0.0198 (3)−0.0033 (3)
C190.0345 (4)0.0222 (3)0.0384 (4)0.0030 (3)0.0126 (4)0.0088 (3)
C200.0184 (3)0.0186 (3)0.0201 (3)0.0032 (2)0.0077 (2)0.0038 (2)
O1—C11.2403 (9)C9—C201.5022 (9)
O2—C111.3725 (8)C10—C201.4976 (9)
O2—H1O20.869 (16)C11—C121.3998 (9)
O3—C121.3610 (8)C12—C131.4058 (9)
O3—H1O30.875 (14)C13—C141.3948 (9)
C1—C101.4638 (10)C13—C151.5196 (9)
C1—C21.5003 (11)C14—H14A0.997 (12)
C2—C31.5208 (11)C15—C171.5280 (12)
C2—H2A1.008 (14)C15—C161.5329 (12)
C2—H2B0.982 (15)C15—H15A1.006 (15)
C3—C41.5406 (11)C16—H16A0.989 (14)
C3—H3A0.996 (13)C16—H16B0.969 (14)
C3—H3B1.011 (13)C16—H16C0.993 (15)
C4—C51.5286 (10)C17—H17A1.008 (16)
C4—C191.5345 (11)C17—H17B1.026 (14)
C4—C181.5379 (10)C17—H17C1.026 (15)
C5—C101.3674 (9)C18—H18A1.001 (13)
C5—C61.4615 (10)C18—H18B0.987 (15)
C6—C71.3655 (10)C18—H18C0.996 (13)
C6—H6A0.984 (12)C19—H19A1.013 (15)
C7—C81.4574 (9)C19—H19B1.011 (15)
C7—H7A0.975 (12)C19—H19C0.966 (14)
C8—C91.4065 (9)C20—H20A0.993 (11)
C8—C141.4068 (9)C20—H20B1.000 (11)
C9—C111.3912 (9)
C11—O2—H1O2108.3 (10)O3—C12—C13119.36 (6)
C12—O3—H1O3108.7 (9)C11—C12—C13120.46 (6)
O1—C1—C10120.59 (7)C14—C13—C12118.06 (6)
O1—C1—C2121.49 (7)C14—C13—C15122.54 (6)
C10—C1—C2117.78 (6)C12—C13—C15119.35 (6)
C1—C2—C3111.47 (6)C13—C14—C8122.04 (6)
C1—C2—H2A109.2 (8)C13—C14—H14A120.7 (7)
C3—C2—H2A112.7 (8)C8—C14—H14A117.3 (7)
C1—C2—H2B106.1 (8)C13—C15—C17113.17 (6)
C3—C2—H2B112.5 (8)C13—C15—C16109.93 (6)
H2A—C2—H2B104.4 (11)C17—C15—C16110.29 (6)
C2—C3—C4113.28 (6)C13—C15—H15A107.8 (8)
C2—C3—H3A111.3 (7)C17—C15—H15A108.4 (9)
C4—C3—H3A107.2 (7)C16—C15—H15A107.0 (9)
C2—C3—H3B110.9 (7)C15—C16—H16A107.6 (8)
C4—C3—H3B108.5 (7)C15—C16—H16B110.0 (8)
H3A—C3—H3B105.3 (10)H16A—C16—H16B112.7 (11)
C5—C4—C19109.16 (6)C15—C16—H16C111.9 (8)
C5—C4—C18110.87 (6)H16A—C16—H16C109.3 (12)
C19—C4—C18109.12 (7)H16B—C16—H16C105.3 (11)
C5—C4—C3109.63 (6)C15—C17—H17A111.3 (9)
C19—C4—C3110.87 (7)C15—C17—H17B109.3 (8)
C18—C4—C3107.17 (6)H17A—C17—H17B107.7 (12)
C10—C5—C6120.53 (6)C15—C17—H17C112.8 (8)
C10—C5—C4121.86 (6)H17A—C17—H17C108.0 (12)
C6—C5—C4117.47 (6)H17B—C17—H17C107.6 (11)
C7—C6—C5126.80 (6)C4—C18—H18A111.3 (8)
C7—C6—H6A117.7 (7)C4—C18—H18B109.3 (8)
C5—C6—H6A114.9 (7)H18A—C18—H18B110.3 (11)
C6—C7—C8128.23 (6)C4—C18—H18C108.9 (8)
C6—C7—H7A115.8 (7)H18A—C18—H18C109.0 (10)
C8—C7—H7A115.7 (7)H18B—C18—H18C108.0 (11)
C9—C8—C14118.71 (6)C4—C19—H19A110.6 (9)
C9—C8—C7121.08 (6)C4—C19—H19B109.0 (9)
C14—C8—C7120.20 (6)H19A—C19—H19B109.6 (12)
C11—C9—C8119.44 (6)C4—C19—H19C110.9 (8)
C11—C9—C20122.14 (6)H19A—C19—H19C106.1 (12)
C8—C9—C20118.41 (6)H19B—C19—H19C110.6 (12)
C5—C10—C1121.89 (6)C10—C20—C9107.30 (5)
C5—C10—C20120.26 (6)C10—C20—H20A108.4 (6)
C1—C10—C20116.97 (6)C9—C20—H20A110.8 (6)
O2—C11—C9122.74 (6)C10—C20—H20B109.8 (6)
O2—C11—C12116.45 (5)C9—C20—H20B110.4 (6)
C9—C11—C12120.63 (6)H20A—C20—H20B110.1 (9)
O3—C12—C11120.14 (5)
O1—C1—C2—C3160.07 (7)O1—C1—C10—C20−4.42 (10)
C10—C1—C2—C3−24.13 (10)C2—C1—C10—C20179.74 (6)
C1—C2—C3—C454.32 (9)C8—C9—C11—O2−175.30 (6)
C2—C3—C4—C5−48.51 (9)C20—C9—C11—O25.92 (10)
C2—C3—C4—C1972.08 (9)C8—C9—C11—C129.76 (9)
C2—C3—C4—C18−168.92 (7)C20—C9—C11—C12−169.02 (6)
C19—C4—C5—C10−108.14 (8)O2—C11—C12—O3−2.53 (9)
C18—C4—C5—C10131.62 (7)C9—C11—C12—O3172.71 (6)
C3—C4—C5—C1013.49 (9)O2—C11—C12—C13179.82 (6)
C19—C4—C5—C667.64 (8)C9—C11—C12—C13−4.93 (10)
C18—C4—C5—C6−52.61 (8)O3—C12—C13—C14−178.92 (6)
C3—C4—C5—C6−170.74 (6)C11—C12—C13—C14−1.26 (10)
C10—C5—C6—C735.04 (12)O3—C12—C13—C15−1.36 (10)
C4—C5—C6—C7−140.79 (8)C11—C12—C13—C15176.30 (6)
C5—C6—C7—C8−3.68 (14)C12—C13—C14—C82.58 (11)
C6—C7—C8—C9−29.82 (12)C15—C13—C14—C8−174.89 (7)
C6—C7—C8—C14148.89 (8)C9—C8—C14—C132.18 (10)
C14—C8—C9—C11−8.32 (10)C7—C8—C14—C13−176.55 (7)
C7—C8—C9—C11170.41 (6)C14—C13—C15—C17−42.19 (10)
C14—C8—C9—C20170.51 (6)C12—C13—C15—C17140.37 (7)
C7—C8—C9—C20−10.77 (9)C14—C13—C15—C1681.62 (9)
C6—C5—C10—C1−159.14 (6)C12—C13—C15—C16−95.82 (8)
C4—C5—C10—C116.50 (10)C5—C10—C20—C9−75.85 (8)
C6—C5—C10—C209.77 (10)C1—C10—C20—C993.60 (7)
C4—C5—C10—C20−174.58 (6)C11—C9—C20—C10−106.68 (7)
O1—C1—C10—C5164.85 (7)C8—C9—C20—C1074.52 (7)
C2—C1—C10—C5−10.99 (10)
Cg1 is the centroid of C8–C9/C11–C14 ring.
D—H···AD—HH···AD···AD—H···A
O2—H1O2···O10.870 (18)2.088 (18)2.9479 (8)169.8 (15)
O2—H1O2···O2i0.870 (18)2.541 (16)2.8818 (7)104.3 (12)
O3—H1O3···O20.875 (14)2.208 (16)2.6955 (7)114.9 (12)
O3—H1O3···O1i0.875 (14)2.046 (14)2.8448 (7)151.3 (14)
C7—H7A···O2ii0.974 (12)2.440 (12)3.2262 (9)137.5 (10)
C15—H15A···O31.007 (15)2.364 (15)2.8216 (8)106.6 (10)
C18—H18B···O3iii0.986 (15)2.585 (15)3.3467 (10)134.1 (11)
C19—H19B···Cg1ii1.011 (15)2.798 (16)3.7130 (10)150.8 (12)
C20—H20A···Cg1iv0.993 (11)2.847 (12)3.7506 (8)151.6 (9)
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of C8–C9/C11–C14 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H1O2⋯O10.870 (18)2.088 (18)2.9479 (8)169.8 (15)
O2—H1O2⋯O2i0.870 (18)2.541 (16)2.8818 (7)104.3 (12)
O3—H1O3⋯O20.875 (14)2.208 (16)2.6955 (7)114.9 (12)
O3—H1O3⋯O1i0.875 (14)2.046 (14)2.8448 (7)151.3 (14)
C7—H7A⋯O2ii0.974 (12)2.440 (12)3.2262 (9)137.5 (10)
C15—H15A⋯O31.007 (15)2.364 (15)2.8216 (8)106.6 (10)
C18—H18B⋯O3iii0.986 (15)2.585 (15)3.3467 (10)134.1 (11)
C19—H19BCg1ii1.011 (15)2.798 (16)3.7130 (10)150.8 (12)
C20—H20ACg1iv0.993 (11)2.847 (12)3.7506 (8)151.6 (9)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 2.  Structure, biosynthetic relationships and chemical synthesis of the icetexane diterpenoids.

Authors:  Eric M Simmons; Richmond Sarpong
Journal:  Nat Prod Rep       Date:  2009-06-25       Impact factor: 13.423

3.  Bioactivity-guided isolation of cytotoxic constituents from stem-bark of Premna tomentosa.

Authors:  A Hymavathi; K Suresh Babu; V G M Naidu; S Rama Krishna; Prakash V Diwan; J Madhusudana Rao
Journal:  Bioorg Med Chem Lett       Date:  2009-08-06       Impact factor: 2.823

4.  6α-Hy-droxy-5,6-dihydro-salviasperanol.

Authors:  Safra Izuani Jama Asik; Ibrahim Abdul Razak; Abdul Wahab Salae; Suchada Chantrapromma; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-10-23

5.  Redetermination and absolute configuration of 7α-hy-droxy-royleanone.

Authors:  Ibrahim Abdul Razak; Abdul Wahab Salae; Suchada Chantrapromma; Chatchanok Karalai; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-06-05

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  6 in total
  1 in total

Review 1.  Ethnomedicinal uses, phytochemistry and pharmacological aspects of the genus Premna: a review.

Authors:  Roza Dianita; Ibrahim Jantan
Journal:  Pharm Biol       Date:  2017-12       Impact factor: 3.503

  1 in total

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