Literature DB >> 21588986

Quinoxaline: Z' = 1 form.

Sathishkumar Ranganathan1, Sudarshan Mahapatra, Tejender S Thakur, Gautam R Desiraju.   

Abstract

A new Z' = 1 crystal structure of quinoxaline (or 1,4-diaza-naphthalene), C(8)H(6)N(2), with one-fifth the volume of the earlier known Z' = 5 structure was obtained by means of an in situ cryocrystallization technique.

Entities:  

Year:  2010        PMID: 21588986      PMCID: PMC3009138          DOI: 10.1107/S1600536810039905

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the structure of quinoxaline Z′ = 5, see: Anthony et al. (1998 ▶). For the crystal structure of the hydrated organic compound, see: Namba et al. (1981 ▶).

Experimental

Crystal data

C8H6N2 M = 130.15 Orthorhombic, a = 4.0212 (13) Å b = 7.187 (2) Å c = 23.095 (7) Å V = 667.5 (3) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 270 K 0.40 × 0.30 × 0.30 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.968, T max = 0.976 7556 measured reflections 956 independent reflections 494 reflections with I > 2σ(I) R int = 0.045

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.106 S = 0.90 956 reflections 91 parameters H-atom parameters constrained Δρmax = 0.13 e Å−3 Δρmin = −0.15 e Å−3 Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT (Bruker, 1998 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810039905/ds2061sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810039905/ds2061Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C8H6N2Dx = 1.295 Mg m3
Mr = 130.15Melting point = 301–305 K
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 734 reflections
a = 4.0212 (13) Åθ = 1.8–26.0°
b = 7.187 (2) ŵ = 0.08 mm1
c = 23.095 (7) ÅT = 270 K
V = 667.5 (3) Å3Block, pink
Z = 40.40 × 0.30 × 0.30 mm
F(000) = 272
Bruker SMART CCD area-detector diffractometer956 independent reflections
Radiation source: fine-focus sealed tube494 reflections with I > 2σ(I)
graphiteRint = 0.045
φ and ω scansθmax = 27.9°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −5→5
Tmin = 0.968, Tmax = 0.976k = −9→9
7556 measured reflectionsl = −29→29
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.106H-atom parameters constrained
S = 0.90w = 1/[σ2(Fo2) + (0.0652P)2] where P = (Fo2 + 2Fc2)/3
956 reflections(Δ/σ)max < 0.001
91 parametersΔρmax = 0.13 e Å3
0 restraintsΔρmin = −0.15 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement on F2 for ALL reflections except those flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating -R-factor-obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.2099 (7)0.1700 (3)0.11405 (9)0.1298 (9)
N20.2375 (6)0.4337 (3)0.20264 (7)0.1131 (8)
C30.3379 (8)0.1356 (3)0.16499 (13)0.1287 (13)
C40.3497 (7)0.2654 (4)0.20858 (9)0.1197 (10)
C5−0.0218 (7)0.6547 (3)0.13897 (10)0.1051 (9)
C6−0.1499 (7)0.6977 (3)0.08739 (11)0.1121 (10)
C7−0.1662 (7)0.5672 (4)0.04429 (10)0.1201 (10)
C8−0.0500 (9)0.3930 (4)0.05303 (8)0.1210 (10)
C90.0873 (6)0.3450 (2)0.10587 (8)0.0900 (8)
C100.1023 (6)0.4767 (3)0.14993 (7)0.0842 (7)
H30.424900.017800.172000.1550*
H40.442300.231300.243900.1440*
H5−0.015100.744400.168000.1260*
H6−0.228900.817400.080700.1340*
H7−0.258200.598800.008700.1440*
H8−0.062200.305400.023500.1450*
U11U22U33U12U13U23
N10.175 (2)0.0880 (13)0.1265 (15)0.0079 (13)−0.0063 (15)−0.0159 (10)
N20.1395 (18)0.1161 (14)0.0837 (11)−0.0085 (13)−0.0069 (11)−0.0063 (9)
C30.156 (3)0.0884 (14)0.1418 (19)0.0102 (16)0.003 (2)0.0182 (15)
C40.134 (2)0.1240 (18)0.1012 (14)0.002 (2)−0.0040 (16)0.0271 (14)
C50.131 (2)0.0819 (13)0.1025 (14)0.0005 (13)0.0090 (14)−0.0123 (10)
C60.1148 (19)0.0976 (14)0.1238 (17)0.0038 (14)0.0150 (17)0.0233 (14)
C70.120 (2)0.154 (2)0.0862 (13)−0.0023 (19)−0.0026 (14)0.0241 (16)
C80.160 (2)0.1223 (17)0.0806 (13)0.0018 (19)−0.0101 (16)−0.0157 (12)
C90.1152 (17)0.0750 (10)0.0797 (11)−0.0063 (12)0.0067 (12)−0.0083 (8)
C100.1008 (16)0.0802 (10)0.0717 (10)−0.0131 (12)0.0090 (10)−0.0034 (8)
N1—C31.308 (4)C8—C91.383 (3)
N1—C91.364 (3)C9—C101.391 (3)
N2—C41.298 (4)C3—H30.9300
N2—C101.369 (3)C4—H40.9300
C3—C41.373 (4)C5—H50.9300
C5—C61.334 (4)C6—H60.9300
C5—C101.396 (3)C7—H70.9300
C6—C71.369 (4)C8—H80.9300
C7—C81.352 (4)
N1···N22.791 (3)H4···N2v2.7900
N2···N12.791 (3)H7···C6vi3.0900
N2···H4i2.7900H8···C8iii3.0000
C6···H7ii3.0900H8···C8iv3.0700
C8···H8iii3.0700H8···H8iii2.4200
C8···H8iv3.0000H8···H8iv2.4200
C3—N1—C9116.2 (2)C5—C10—C9118.38 (18)
C4—N2—C10116.26 (19)N1—C3—H3118.00
N1—C3—C4123.0 (2)C4—C3—H3119.00
N2—C4—C3122.9 (2)N2—C4—H4119.00
C6—C5—C10120.8 (2)C3—C4—H4119.00
C5—C6—C7120.6 (2)C6—C5—H5120.00
C6—C7—C8120.6 (2)C10—C5—H5120.00
C7—C8—C9120.1 (2)C5—C6—H6120.00
N1—C9—C8119.77 (19)C7—C6—H6120.00
N1—C9—C10120.69 (19)C6—C7—H7120.00
C8—C9—C10119.54 (18)C8—C7—H7120.00
N2—C10—C5120.67 (19)C7—C8—H8120.00
N2—C10—C9121.0 (2)C9—C8—H8120.00
C9—N1—C3—C40.3 (4)C10—C5—C6—C70.8 (4)
C3—N1—C9—C100.3 (4)C5—C6—C7—C8−0.6 (4)
C3—N1—C9—C8179.5 (3)C6—C7—C8—C9−0.1 (5)
C10—N2—C4—C30.3 (4)C7—C8—C9—C100.5 (4)
C4—N2—C10—C5−179.3 (2)C7—C8—C9—N1−178.8 (3)
C4—N2—C10—C90.3 (4)N1—C9—C10—N2−0.6 (4)
N1—C3—C4—N2−0.7 (5)C8—C9—C10—C5−0.3 (4)
C6—C5—C10—C9−0.4 (4)N1—C9—C10—C5179.0 (2)
C6—C5—C10—N2179.2 (3)C8—C9—C10—N2−179.8 (3)
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