Literature DB >> 21588962

2-[(E)-2-(Nitro-methyl-idene)imidazolidin-1-yl]ethanol.

Gaolei Wang1, Dongmei Li, He Li.   

Abstract

In the title compound, C(6)H(11)N(3)O(3), the imidazolidine NH group is involved in a three-center N-H⋯O hydrogen bond, with intra-molecular and inter-molecular branches, to the nitro group O atoms. The centrosymmetric dimers that are formed are further connected by O-H⋯O hydrogen bonds between the hy-droxy and nitro groups into a two-dimensional polymeric structure extending parallel to (101).

Entities:  

Year:  2010        PMID: 21588962      PMCID: PMC3009051          DOI: 10.1107/S1600536810039280

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Tian et al. (2010 ▶); Li et al. (2010 ▶). For background to neonicotinoid insecticides, see: Ohno et al. (2009 ▶); Jeschke & Nauen (2008 ▶).

Experimental

Crystal data

C6H11N3O3 M = 173.18 Monoclinic, a = 6.9422 (2) Å b = 8.7142 (3) Å c = 12.9698 (4) Å β = 94.153 (3)° V = 782.55 (4) Å3 Z = 4 Mo Kα radiation μ = 0.12 mm−1 T = 293 K 0.31 × 0.29 × 0.25 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.967, T max = 1.0 4832 measured reflections 1539 independent reflections 1186 reflections with I > 2σ(I) R int = 0.017

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.108 S = 1.11 1539 reflections 110 parameters H-atom parameters constrained Δρmax = 0.17 e Å−3 Δρmin = −0.17 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810039280/gk2305sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810039280/gk2305Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H11N3O3F(000) = 368
Mr = 173.18Dx = 1.478 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.7107 Å
Hall symbol: -P 2ynCell parameters from 2585 reflections
a = 6.9422 (2) Åθ = 3.2–28.8°
b = 8.7142 (3) ŵ = 0.12 mm1
c = 12.9698 (4) ÅT = 293 K
β = 94.153 (3)°Prism, colourless
V = 782.55 (4) Å30.31 × 0.29 × 0.25 mm
Z = 4
Bruker APEXII CCD diffractometer1539 independent reflections
Radiation source: fine-focus sealed tube1186 reflections with I > 2σ(I)
graphiteRint = 0.017
Detector resolution: 16.0355 pixels mm-1θmax = 26.0°, θmin = 3.2°
ω scansh = −8→8
Absorption correction: multi-scan (SADABS; Bruker, 2005)k = −10→10
Tmin = 0.967, Tmax = 1.0l = −15→15
4832 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.108H-atom parameters constrained
S = 1.11w = 1/[σ2(Fo2) + (0.0606P)2 + 0.045P] where P = (Fo2 + 2Fc2)/3
1539 reflections(Δ/σ)max < 0.001
110 parametersΔρmax = 0.17 e Å3
0 restraintsΔρmin = −0.17 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.7352 (2)0.66673 (18)0.73309 (13)0.0428 (4)
H1A0.70100.76960.70990.051*
H1B0.87090.65090.72300.051*
C20.70406 (19)0.65267 (18)0.84644 (12)0.0387 (4)
H2A0.73380.54850.86870.046*
H2B0.79320.72070.88510.046*
C30.4516 (2)0.84632 (17)0.89333 (14)0.0481 (4)
H3A0.45360.91060.83240.058*
H3B0.53640.89040.94830.058*
C40.2490 (3)0.82924 (18)0.92650 (15)0.0519 (5)
H4A0.15700.88400.88020.062*
H4B0.23960.86680.99640.062*
C50.36609 (19)0.59107 (16)0.88760 (10)0.0296 (3)
C60.3790 (2)0.43186 (17)0.87112 (11)0.0358 (4)
H60.49330.39200.84900.043*
N10.50847 (16)0.68944 (13)0.87087 (9)0.0336 (3)
N20.21646 (17)0.66554 (14)0.92072 (10)0.0403 (3)
H20.11190.62160.93700.048*
N30.23318 (18)0.33545 (14)0.88605 (10)0.0371 (3)
O10.62388 (16)0.55935 (12)0.67291 (8)0.0481 (3)
H10.51610.59490.65800.072*
O20.07390 (15)0.38210 (13)0.91700 (9)0.0480 (3)
O30.25342 (18)0.19348 (13)0.86750 (10)0.0580 (4)
U11U22U33U12U13U23
C10.0326 (8)0.0405 (9)0.0571 (10)−0.0014 (6)0.0154 (7)0.0017 (7)
C20.0258 (7)0.0403 (9)0.0499 (9)−0.0013 (6)0.0021 (6)−0.0009 (7)
C30.0482 (10)0.0322 (9)0.0651 (11)−0.0019 (7)0.0120 (8)−0.0064 (7)
C40.0552 (11)0.0338 (9)0.0689 (12)0.0060 (7)0.0210 (9)−0.0038 (7)
C50.0292 (7)0.0324 (8)0.0274 (7)0.0016 (6)0.0026 (5)0.0012 (5)
C60.0303 (8)0.0324 (8)0.0454 (8)0.0010 (6)0.0077 (6)−0.0015 (6)
N10.0319 (6)0.0298 (7)0.0399 (7)−0.0019 (5)0.0087 (5)−0.0032 (5)
N20.0329 (7)0.0329 (7)0.0568 (8)0.0031 (5)0.0162 (6)−0.0007 (5)
N30.0389 (7)0.0323 (7)0.0400 (7)−0.0019 (5)0.0023 (5)−0.0002 (5)
O10.0507 (7)0.0442 (7)0.0502 (7)0.0038 (5)0.0083 (5)−0.0071 (5)
O20.0372 (6)0.0480 (7)0.0606 (7)−0.0060 (5)0.0163 (5)−0.0029 (5)
O30.0593 (8)0.0293 (7)0.0858 (9)−0.0038 (5)0.0090 (7)−0.0056 (6)
C1—H1A0.9700C5—C61.408 (2)
C1—H1B0.9700C6—H60.9300
C1—C21.506 (2)N1—C21.4523 (17)
C2—H2A0.9700N1—C31.4582 (19)
C2—H2B0.9700N2—H20.8600
C3—H3A0.9700N2—C41.445 (2)
C3—H3B0.9700N3—O31.2701 (16)
C3—C41.508 (2)N3—C61.3406 (18)
C4—H4B0.9700O1—H10.8200
C4—H4A0.9700O1—C11.4123 (19)
C5—N11.3379 (17)O2—N31.2702 (15)
C5—N21.3227 (17)
C1—O1—H1109.5N1—C5—C6123.43 (13)
C1—C2—H2A108.9N1—C2—C1113.42 (12)
C1—C2—H2B108.9N1—C2—H2A108.9
H1A—C1—H1B107.9N1—C2—H2B108.9
C2—N1—C3121.44 (12)N1—C3—H3A111.0
C2—C1—H1A109.2N1—C3—H3B111.0
C2—C1—H1B109.2N1—C3—C4103.67 (12)
H2A—C2—H2B107.7N2—C5—N1110.19 (12)
C3—C4—H4B111.1N2—C5—C6126.39 (13)
C3—C4—H4A111.1N2—C4—C3103.18 (12)
H3A—C3—H3B109.0N2—C4—H4B111.1
C4—N2—H2123.9N2—C4—H4A111.1
C4—C3—H3A111.0N3—C6—C5122.59 (13)
C4—C3—H3B111.0N3—C6—H6118.7
H4B—C4—H4A109.1O1—C1—H1A109.2
C5—N1—C2127.40 (12)O1—C1—H1B109.2
C5—N1—C3110.75 (12)O1—C1—C2111.96 (12)
C5—N2—H2123.9O2—N3—C6121.94 (12)
C5—N2—C4112.19 (12)O3—N3—O2118.84 (12)
C5—C6—H6118.7O3—N3—C6119.21 (13)
O1—C1—C2—N1−64.63 (17)C2—N1—C3—C4−173.37 (14)
O2—N3—C6—C5−0.6 (2)C3—N1—C2—C1−87.91 (16)
O3—N3—C6—C5178.47 (14)C5—N1—C2—C1100.19 (16)
N1—C5—N2—C41.41 (17)C5—N1—C3—C4−0.24 (17)
N1—C5—C6—N3−178.43 (12)C5—N2—C4—C3−1.48 (19)
N1—C3—C4—N20.97 (18)C6—C5—N1—C2−8.2 (2)
N2—C5—N1—C2171.93 (13)C6—C5—N1—C3179.16 (14)
N2—C5—N1—C3−0.69 (16)C6—C5—N2—C4−178.44 (14)
N2—C5—C6—N31.4 (2)
D—H···AD—HH···AD···AD—H···A
N2—H2···O2i0.862.373.0463 (16)136
N2—H2···O20.862.122.6600 (16)121
O1—H1···O3ii0.822.062.8814 (16)175
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2⋯O2i0.862.373.0463 (16)136
N2—H2⋯O20.862.122.6600 (16)121
O1—H1⋯O3ii0.822.062.8814 (16)175

Symmetry codes: (i) ; (ii) .

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