Literature DB >> 21588961

4-Phenyl-sulfon-yl-2-(p-tolyl-sulfon-yl)-1H,8H-pyrrolo-[2,3-b]indole.

Jeanese C Badenock, Jason A Jordan, Erin T Pelkey, Gordon W Gribble, Jerry P Jasinski.   

Abstract

The title compound, C(23)H(18)N(2)O(4)S(2), contains a pyrrolo group fused onto the plane of an indole ring with phenyl-sulfonyl and p-toluene-sulfonyl groups bonded to the indole and pyrrolo rings. The angles between the mean planes of the pyrrolo-indole ring and the phenyl-sulfonyl and p-toluene-sulfonyl rings are 73.7 (6) and 80.6 (0)°, respectively. The dihedral angle between the mean planes of the two benzene rings is 78.7 (4)°. In the crystal, both classical N-H⋯O and non-classical C-H⋯O inter-molecular hydrogen-bonding inter-actions are observed, as well as weak π-π inter-actions [centroid-centroid distances = 3.6258 (8) and 3.9298 (8) Å], which contribute to the stability of the packing.

Entities:  

Year:  2010        PMID: 21588961      PMCID: PMC3009299          DOI: 10.1107/S1600536810039425

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

We have been inter­ested in the synthesis of fused indole heterocycles (Gribble et al., 2005 ▶) for the construction of more elaborate mol­ecules, such as the potent anti­biotics pyrroindomycins A and B (Abbanat et al., 1999 ▶; Ding et al., 1994 ▶) Both pyrrolo­[2,3-b]indoles and pyrrolo­[3,4-b]indoles can be synthesized in one step via the Barton–Zard pyrrole synthesis (Barton & Zard, 1985 ▶; Barton et al., 1990 ▶) from 3-nitro­indoles, depending on the N-indole protecting group [Pelkey et al., 1996 ▶; Pelkey & Gribble, 1997 ▶, 1999 ▶, 2006 ▶). For recent examples of the Barton–Zard pyrrole synthesis, see: Bobal & Lightner (2001 ▶); Woydziak et al. (2005 ▶); Larionov & deMeijere (2005 ▶); Coffin et al. (2006 ▶); Okujima et al. (2006 ▶); Ono (2008 ▶). For related structures, see: Jackson et al. (1975 ▶); Moody & Ward (1984a ▶,b ▶); Yamane et al. (1986 ▶); Yin et al. (2010 ▶); Tsuji et al. (2002 ▶); Somei et al. (1997 ▶); Kawasaki et al. (2005 ▶); Jasinski et al. (2010 ▶). For MOPAC theoretical calculations, see: Schmidt & Polik (2007 ▶). For standard bond lengths, see: Allen et al. (1987 ▶)

Experimental

Crystal data

C23H18N2O4S2 M = 450.51 Triclinic, a = 8.1547 (3) Å b = 11.0471 (5) Å c = 11.7185 (4) Å α = 73.834 (4)° β = 87.131 (3)° γ = 79.277 (4)° V = 996.22 (7) Å3 Z = 2 Mo Kα radiation μ = 0.30 mm−1 T = 123 K 0.41 × 0.36 × 0.29 mm

Data collection

Oxford Diffraction Xcalibur diffractometer with Ruby (Gemini) detector Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2007 ▶) T min = 0.981, T max = 1.000 12580 measured reflections 6592 independent reflections 5331 reflections with I > 2σ(I) R int = 0.020

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.103 S = 1.09 6592 reflections 281 parameters H-atom parameters constrained Δρmax = 0.52 e Å−3 Δρmin = −0.33 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2007 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis RED (Oxford Diffraction, 2007 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810039425/fl2319sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810039425/fl2319Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C23H18N2O4S2Z = 2
Mr = 450.51F(000) = 468
Triclinic, P1Dx = 1.502 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.1547 (3) ÅCell parameters from 7126 reflections
b = 11.0471 (5) Åθ = 5.0–32.7°
c = 11.7185 (4) ŵ = 0.30 mm1
α = 73.834 (4)°T = 123 K
β = 87.131 (3)°Prism, colorless
γ = 79.277 (4)°0.41 × 0.36 × 0.29 mm
V = 996.22 (7) Å3
Oxford Diffraction Xcalibur diffractometer with Ruby (Gemini) detector6592 independent reflections
Radiation source: Enhance (Cu) X-ray Source5331 reflections with I > 2σ(I)
graphiteRint = 0.020
Detector resolution: 10.5081 pixels mm-1θmax = 32.8°, θmin = 5.1°
ω scansh = −11→11
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2007)k = −16→16
Tmin = 0.981, Tmax = 1.000l = −17→13
12580 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.036Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.103H-atom parameters constrained
S = 1.09w = 1/[σ2(Fo2) + (0.0572P)2 + 0.0394P] where P = (Fo2 + 2Fc2)/3
6592 reflections(Δ/σ)max < 0.001
281 parametersΔρmax = 0.52 e Å3
0 restraintsΔρmin = −0.33 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.24124 (3)0.40940 (3)0.21069 (3)0.01455 (7)
S20.53714 (4)0.07067 (3)0.67939 (3)0.01540 (7)
O10.28990 (11)0.27445 (8)0.22946 (8)0.01961 (18)
O20.10331 (10)0.48046 (9)0.13513 (8)0.01992 (19)
O30.61740 (11)−0.00088 (8)0.59944 (8)0.02005 (19)
O40.63277 (11)0.09255 (9)0.76857 (8)0.02102 (19)
N10.19171 (12)0.42667 (9)0.34605 (9)0.01529 (19)
N20.36818 (12)0.22963 (9)0.48254 (9)0.01541 (19)
H2B0.37220.16940.44620.018*
C10.43829 (15)0.21752 (11)0.59259 (10)0.0155 (2)
C20.40399 (15)0.33305 (11)0.62081 (11)0.0169 (2)
H2A0.43670.35010.69060.020*
C30.30982 (15)0.42085 (11)0.52414 (11)0.0160 (2)
C40.21746 (15)0.55003 (11)0.47483 (11)0.0161 (2)
C50.18616 (17)0.66151 (12)0.51200 (12)0.0218 (3)
H5A0.23060.66280.58500.026*
C60.08910 (17)0.77060 (12)0.44084 (12)0.0242 (3)
H6A0.06800.84710.46530.029*
C70.02218 (16)0.76964 (12)0.33428 (12)0.0232 (3)
H7A−0.04360.84570.28710.028*
C80.04966 (15)0.65990 (12)0.29554 (12)0.0200 (2)
H8A0.00270.65880.22330.024*
C90.14851 (14)0.55177 (11)0.36653 (11)0.0159 (2)
C100.29295 (14)0.35350 (11)0.44405 (10)0.0146 (2)
C110.41636 (14)0.48258 (11)0.16669 (10)0.0142 (2)
C120.57366 (15)0.40983 (12)0.20143 (11)0.0186 (2)
H12A0.58500.32330.24800.022*
C130.71326 (15)0.46588 (13)0.16684 (12)0.0214 (3)
H13A0.82130.41770.19010.026*
C140.69552 (16)0.59186 (13)0.09850 (11)0.0210 (3)
H14A0.79180.62950.07460.025*
C150.53830 (17)0.66374 (13)0.06448 (12)0.0214 (3)
H15A0.52760.75020.01760.026*
C160.39661 (15)0.60964 (12)0.09882 (11)0.0184 (2)
H16A0.28860.65840.07640.022*
C170.37346 (15)−0.00606 (11)0.75228 (10)0.0155 (2)
C180.34028 (16)−0.00884 (12)0.87037 (11)0.0188 (2)
H18A0.40560.02890.91100.023*
C190.21030 (16)−0.06741 (12)0.92891 (11)0.0197 (2)
H19A0.1885−0.07061.01000.024*
C200.11216 (15)−0.12121 (11)0.86952 (11)0.0175 (2)
C210.14575 (16)−0.11501 (12)0.74970 (11)0.0188 (2)
H21A0.0777−0.14960.70800.023*
C220.27672 (15)−0.05922 (11)0.69078 (11)0.0178 (2)
H22A0.3001−0.05730.61010.021*
C23−0.02767 (17)−0.18520 (13)0.93246 (13)0.0244 (3)
H23A−0.0415−0.17271.01220.037*
H23B−0.0010−0.27710.93880.037*
H23C−0.1315−0.14750.88730.037*
U11U22U33U12U13U23
S10.01309 (13)0.01663 (14)0.01399 (14)−0.00350 (10)−0.00090 (10)−0.00358 (10)
S20.01639 (14)0.01312 (13)0.01499 (14)−0.00131 (10)0.00004 (10)−0.00193 (10)
O10.0238 (4)0.0173 (4)0.0193 (4)−0.0061 (3)−0.0006 (3)−0.0059 (3)
O20.0137 (4)0.0273 (5)0.0173 (4)−0.0036 (3)−0.0034 (3)−0.0031 (4)
O30.0205 (4)0.0163 (4)0.0219 (5)−0.0005 (3)0.0043 (3)−0.0056 (3)
O40.0204 (4)0.0218 (4)0.0201 (5)−0.0053 (4)−0.0037 (3)−0.0028 (4)
N10.0165 (5)0.0145 (4)0.0133 (5)−0.0013 (4)0.0001 (4)−0.0022 (4)
N20.0189 (5)0.0120 (4)0.0147 (5)−0.0012 (4)−0.0003 (4)−0.0036 (4)
C10.0183 (5)0.0139 (5)0.0127 (5)−0.0018 (4)0.0003 (4)−0.0017 (4)
C20.0211 (6)0.0146 (5)0.0143 (5)−0.0028 (4)0.0004 (4)−0.0030 (4)
C30.0187 (5)0.0139 (5)0.0145 (5)−0.0024 (4)0.0018 (4)−0.0033 (4)
C40.0167 (5)0.0141 (5)0.0156 (5)−0.0025 (4)0.0029 (4)−0.0018 (4)
C50.0275 (7)0.0167 (5)0.0203 (6)−0.0016 (5)0.0019 (5)−0.0054 (5)
C60.0270 (7)0.0148 (6)0.0287 (7)0.0000 (5)0.0040 (5)−0.0059 (5)
C70.0203 (6)0.0169 (6)0.0271 (7)0.0024 (5)0.0020 (5)−0.0014 (5)
C80.0175 (6)0.0186 (6)0.0201 (6)0.0007 (5)−0.0008 (4)−0.0014 (5)
C90.0149 (5)0.0143 (5)0.0173 (6)−0.0019 (4)0.0040 (4)−0.0033 (4)
C100.0153 (5)0.0134 (5)0.0139 (5)−0.0024 (4)0.0013 (4)−0.0020 (4)
C110.0120 (5)0.0178 (5)0.0134 (5)−0.0037 (4)0.0006 (4)−0.0046 (4)
C120.0160 (5)0.0184 (5)0.0191 (6)−0.0007 (4)−0.0011 (4)−0.0029 (5)
C130.0129 (5)0.0288 (7)0.0222 (6)−0.0022 (5)−0.0004 (4)−0.0073 (5)
C140.0178 (6)0.0301 (7)0.0187 (6)−0.0112 (5)0.0043 (4)−0.0085 (5)
C150.0253 (6)0.0202 (6)0.0177 (6)−0.0073 (5)0.0011 (5)−0.0019 (5)
C160.0177 (5)0.0188 (5)0.0165 (6)−0.0016 (4)−0.0013 (4)−0.0019 (4)
C170.0171 (5)0.0114 (5)0.0153 (5)−0.0007 (4)0.0000 (4)−0.0006 (4)
C180.0227 (6)0.0174 (5)0.0153 (6)−0.0035 (5)−0.0030 (4)−0.0024 (4)
C190.0235 (6)0.0200 (6)0.0141 (6)−0.0035 (5)0.0010 (4)−0.0026 (4)
C200.0190 (6)0.0128 (5)0.0184 (6)−0.0013 (4)0.0013 (4)−0.0018 (4)
C210.0226 (6)0.0151 (5)0.0197 (6)−0.0041 (4)−0.0003 (5)−0.0057 (4)
C220.0224 (6)0.0148 (5)0.0153 (6)−0.0012 (4)0.0018 (4)−0.0044 (4)
C230.0258 (7)0.0244 (6)0.0241 (7)−0.0098 (5)0.0058 (5)−0.0062 (5)
S1—O11.4263 (9)C8—H8A0.9500
S1—O21.4316 (9)C11—C161.3914 (16)
S1—N11.6707 (10)C11—C121.3941 (16)
S1—C111.7557 (12)C12—C131.3856 (18)
S2—O41.4322 (9)C12—H12A0.9500
S2—O31.4455 (9)C13—C141.3839 (19)
S2—C11.7300 (12)C13—H13A0.9500
S2—C171.7701 (12)C14—C151.3889 (18)
N1—C101.4084 (15)C14—H14A0.9500
N1—C91.4446 (15)C15—C161.3895 (18)
N2—C101.3506 (14)C15—H15A0.9500
N2—C11.3990 (15)C16—H16A0.9500
N2—H2B0.8800C17—C181.3896 (17)
C1—C21.3818 (17)C17—C221.3970 (17)
C2—C31.4184 (17)C18—C191.3958 (17)
C2—H2A0.9500C18—H18A0.9500
C3—C101.3760 (17)C19—C201.3932 (18)
C3—C41.4567 (16)C19—H19A0.9500
C4—C51.3937 (18)C20—C211.4022 (17)
C4—C91.4075 (17)C20—C231.5065 (17)
C5—C61.3877 (18)C21—C221.3897 (17)
C5—H5A0.9500C21—H21A0.9500
C6—C71.391 (2)C22—H22A0.9500
C6—H6A0.9500C23—H23A0.9800
C7—C81.3861 (19)C23—H23B0.9800
C7—H7A0.9500C23—H23C0.9800
C8—C91.3871 (16)
O1—S1—O2121.13 (6)N2—C10—C3111.89 (11)
O1—S1—N1104.32 (5)N2—C10—N1134.91 (11)
O2—S1—N1106.30 (5)C3—C10—N1112.99 (10)
O1—S1—C11109.10 (5)C16—C11—C12121.61 (11)
O2—S1—C11109.09 (5)C16—C11—S1120.24 (9)
N1—S1—C11105.77 (5)C12—C11—S1118.15 (9)
O4—S2—O3120.17 (6)C13—C12—C11118.89 (11)
O4—S2—C1108.32 (6)C13—C12—H12A120.6
O3—S2—C1107.11 (6)C11—C12—H12A120.6
O4—S2—C17107.49 (6)C14—C13—C12120.11 (12)
O3—S2—C17107.91 (6)C14—C13—H13A119.9
C1—S2—C17104.84 (6)C12—C13—H13A119.9
C10—N1—C9103.92 (10)C13—C14—C15120.63 (12)
C10—N1—S1119.83 (8)C13—C14—H14A119.7
C9—N1—S1121.49 (8)C15—C14—H14A119.7
C10—N2—C1105.31 (10)C14—C15—C16120.20 (12)
C10—N2—H2B127.3C14—C15—H15A119.9
C1—N2—H2B127.3C16—C15—H15A119.9
C2—C1—N2110.47 (10)C15—C16—C11118.56 (11)
C2—C1—S2128.02 (10)C15—C16—H16A120.7
N2—C1—S2121.31 (9)C11—C16—H16A120.7
C1—C2—C3105.85 (11)C18—C17—C22120.89 (11)
C1—C2—H2A127.1C18—C17—S2118.71 (10)
C3—C2—H2A127.1C22—C17—S2120.37 (9)
C10—C3—C2106.48 (10)C17—C18—C19119.56 (12)
C10—C3—C4106.28 (10)C17—C18—H18A120.2
C2—C3—C4147.16 (12)C19—C18—H18A120.2
C5—C4—C9118.78 (11)C20—C19—C18120.61 (12)
C5—C4—C3134.52 (12)C20—C19—H19A119.7
C9—C4—C3106.70 (10)C18—C19—H19A119.7
C6—C5—C4119.01 (13)C19—C20—C21118.85 (11)
C6—C5—H5A120.5C19—C20—C23120.83 (11)
C4—C5—H5A120.5C21—C20—C23120.31 (12)
C5—C6—C7121.04 (12)C22—C21—C20121.23 (12)
C5—C6—H6A119.5C22—C21—H21A119.4
C7—C6—H6A119.5C20—C21—H21A119.4
C8—C7—C6121.29 (12)C21—C22—C17118.83 (11)
C8—C7—H7A119.4C21—C22—H22A120.6
C6—C7—H7A119.4C17—C22—H22A120.6
C7—C8—C9117.26 (12)C20—C23—H23A109.5
C7—C8—H8A121.4C20—C23—H23B109.5
C9—C8—H8A121.4H23A—C23—H23B109.5
C8—C9—C4122.62 (11)C20—C23—H23C109.5
C8—C9—N1127.30 (11)H23A—C23—H23C109.5
C4—C9—N1110.05 (10)H23B—C23—H23C109.5
O1—S1—N1—C1042.28 (10)C2—C3—C10—N20.36 (14)
O2—S1—N1—C10171.37 (9)C4—C3—C10—N2−177.43 (10)
C11—S1—N1—C10−72.74 (10)C2—C3—C10—N1175.95 (10)
O1—S1—N1—C9174.84 (9)C4—C3—C10—N1−1.84 (13)
O2—S1—N1—C9−56.07 (10)C9—N1—C10—N2176.61 (13)
C11—S1—N1—C959.82 (10)S1—N1—C10—N2−43.72 (18)
C10—N2—C1—C20.64 (13)C9—N1—C10—C32.39 (13)
C10—N2—C1—S2175.91 (9)S1—N1—C10—C3142.06 (9)
O4—S2—C1—C2−20.80 (13)O1—S1—C11—C16154.12 (10)
O3—S2—C1—C2−151.78 (11)O2—S1—C11—C1619.79 (12)
C17—S2—C1—C293.73 (12)N1—S1—C11—C16−94.18 (11)
O4—S2—C1—N2164.83 (9)O1—S1—C11—C12−25.73 (11)
O3—S2—C1—N233.85 (11)O2—S1—C11—C12−160.07 (10)
C17—S2—C1—N2−80.63 (10)N1—S1—C11—C1285.96 (11)
N2—C1—C2—C3−0.43 (14)C16—C11—C12—C13−0.25 (19)
S2—C1—C2—C3−175.30 (9)S1—C11—C12—C13179.61 (10)
C1—C2—C3—C100.05 (13)C11—C12—C13—C14−0.3 (2)
C1—C2—C3—C4176.14 (18)C12—C13—C14—C150.4 (2)
C10—C3—C4—C5179.76 (14)C13—C14—C15—C160.0 (2)
C2—C3—C4—C53.7 (3)C14—C15—C16—C11−0.49 (19)
C10—C3—C4—C90.47 (13)C12—C11—C16—C150.64 (19)
C2—C3—C4—C9−175.62 (18)S1—C11—C16—C15−179.22 (10)
C9—C4—C5—C6−0.39 (18)O4—S2—C17—C1812.96 (11)
C3—C4—C5—C6−179.62 (13)O3—S2—C17—C18143.93 (9)
C4—C5—C6—C70.5 (2)C1—S2—C17—C18−102.15 (10)
C5—C6—C7—C80.1 (2)O4—S2—C17—C22−168.94 (9)
C6—C7—C8—C9−0.90 (19)O3—S2—C17—C22−37.97 (11)
C7—C8—C9—C41.05 (18)C1—S2—C17—C2275.95 (11)
C7—C8—C9—N1178.71 (12)C22—C17—C18—C191.07 (17)
C5—C4—C9—C8−0.41 (18)S2—C17—C18—C19179.16 (9)
C3—C4—C9—C8179.01 (11)C17—C18—C19—C20−1.00 (18)
C5—C4—C9—N1−178.44 (11)C18—C19—C20—C21−0.28 (18)
C3—C4—C9—N10.99 (13)C18—C19—C20—C23179.65 (11)
C10—N1—C9—C8−179.91 (11)C19—C20—C21—C221.53 (18)
S1—N1—C9—C841.26 (16)C23—C20—C21—C22−178.40 (11)
C10—N1—C9—C4−2.01 (12)C20—C21—C22—C17−1.47 (18)
S1—N1—C9—C4−140.84 (9)C18—C17—C22—C210.15 (17)
C1—N2—C10—C3−0.61 (13)S2—C17—C22—C21−177.91 (9)
C1—N2—C10—N1−174.88 (12)
D—H···AD—HH···AD···AD—H···A
N2—H2B···O3i0.882.062.9244 (14)167
C13—H13A···O2ii0.952.533.2125 (15)129
C22—H22A···O3i0.952.453.3786 (15)165
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2B⋯O3i0.882.062.9244 (14)167
C13—H13A⋯O2ii0.952.533.2125 (15)129
C22—H22A⋯O3i0.952.453.3786 (15)165

Symmetry codes: (i) ; (ii) .

  8 in total

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Authors:  Aaron R Coffin; Michael A Roussell; Elina Tserlin; Erin T Pelkey
Journal:  J Org Chem       Date:  2006-08-18       Impact factor: 4.354

8.  Pyrroindomycins, novel antibiotics produced by Streptomyces rugosporus sp. LL-42D005. I. Isolation and structure determination.

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