Literature DB >> 21588959

Tris[2-(2-thienyl-methyl-amino)-eth-yl]ammonium triiodide.

Muhammet Işıklan, Frank R Fronczek, Md Alamgir Hossain.   

Abstract

In the title compound, C(21)H(33)N(4)S(3) (3+)·3I(-), three secondary amines are protonated, while the central amine remains unprotonated. One thio-phene is disordered with an occupancy ratio of 0.868 (6)/0.132 (6). Each protonated amine is involved in N-H⋯I hydrogen-bonding inter-actions with the iodide anions.

Entities:  

Year:  2010        PMID: 21588959      PMCID: PMC3009322          DOI: 10.1107/S1600536810039462

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to anion hosts, see: Bianchi et al. (1997 ▶); Kang et al. (2005 ▶); Hossain (2008 ▶); For related structures, see: Bazzicalupi et al. (2009 ▶); Hossain et al. (2002 ▶, 2004 ▶); Burgess et al. (1991 ▶); Saeed et al. (2010 ▶).

Experimental

Crystal data

C21H33N4S3 3+·3I− M = 818.42 Orthorhombic, a = 10.5433 (5) Å b = 11.4203 (6) Å c = 24.5107 (15) Å V = 2951.3 (3) Å3 Z = 4 Mo Kα radiation μ = 3.41 mm−1 T = 90 K 0.20 × 0.17 × 0.15 mm

Data collection

Nonius KappaCCD diffractometer with Oxford Cryostream Absorption correction: multi-scan (HKL ; Otwinowski & Minor, 1997 ▶) T min = 0.549, T max = 0.629 90447 measured reflections 10653 independent reflections 9446 reflections with I > 2σ(I) R int = 0.069

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.093 S = 1.04 10653 reflections 277 parameters 30 restraints H-atom parameters constrained Δρmax = 2.96 e Å−3 Δρmin = −2.18 e Å−3 Absolute structure: Flack (1983 ▶), 4708 Friedel pairs Flack parameter: 0.02 (2) Data collection: COLLECT (Nonius, 2000 ▶); cell refinement: DENZO and SCALEPACK (Otwinowski & Minor, 1997 ▶); data reduction: DENZO and SCALEPACK; program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP–3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810039462/rk2235sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810039462/rk2235Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H33N4S33+·3IF(000) = 1576
Mr = 818.42Dx = 1.842 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 5918 reflections
a = 10.5433 (5) Åθ = 2.5–32.6°
b = 11.4203 (6) ŵ = 3.41 mm1
c = 24.5107 (15) ÅT = 90 K
V = 2951.3 (3) Å3Block, colourless
Z = 40.20 × 0.17 × 0.15 mm
Nonius KappaCCD diffractometer with Oxford Cryostream10653 independent reflections
Radiation source: fine–focus sealed tube9446 reflections with I > 2σ(I)
graphiteRint = 0.069
ω– and φ–scansθmax = 32.6°, θmin = 2.6°
Absorption correction: multi-scan (HKL SCALEPACK; Otwinowski & Minor, 1997)h = −15→15
Tmin = 0.549, Tmax = 0.629k = −17→17
90447 measured reflectionsl = −36→36
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.038H-atom parameters constrained
wR(F2) = 0.093w = 1/[σ2(Fo2) + (0.0425P)2 + 8.7643P] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max = 0.003
10653 reflectionsΔρmax = 2.96 e Å3
277 parametersΔρmin = −2.18 e Å3
30 restraintsAbsolute structure: Flack (1983), 4708 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.02 (2)
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R–factor wR and goodness of fit S are based on F2, conventional R–factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R–factors(gt) etc. and is not relevant to the choice of reflections for refinement. R–factors based on F2 are statistically about twice as large as those based on F, and R–factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
I10.66009 (2)0.80566 (2)0.512489 (10)0.01937 (5)
I20.28784 (4)0.15756 (3)0.526628 (15)0.03742 (9)
I30.69376 (3)0.78787 (3)0.708662 (14)0.03409 (8)
S20.31359 (12)1.01963 (11)0.68942 (5)0.0312 (2)
N10.4937 (3)0.5219 (3)0.59749 (14)0.0169 (6)
N20.3384 (4)0.4343 (3)0.46508 (14)0.0209 (6)
H21N0.26300.47230.47180.025*
H22N0.32660.35580.47170.025*
N30.4390 (3)0.7677 (3)0.62014 (14)0.0179 (6)
H31N0.48630.73880.59160.021*
H32N0.49460.79220.64670.021*
N40.7721 (4)0.5480 (4)0.57790 (16)0.0247 (7)
H41N0.71360.60200.56600.030*
H42N0.78510.49540.55000.030*
C10.3954 (4)0.4734 (4)0.56157 (18)0.0210 (8)
H1A0.31550.51800.56620.025*
H1B0.37890.39070.57130.025*
C20.4394 (4)0.4811 (4)0.50268 (17)0.0225 (8)
H2A0.45800.56370.49330.027*
H2B0.51830.43520.49800.027*
C30.3761 (5)0.4522 (4)0.40606 (18)0.0273 (9)
H3A0.37020.53670.39730.033*
H3B0.46570.42830.40150.033*
S10.13415 (11)0.40416 (11)0.36040 (5)0.0283 (2)
C40.2957 (4)0.3848 (4)0.36614 (18)0.0251 (8)
C50.3416 (5)0.3115 (4)0.32588 (17)0.0267 (8)
H50.42830.29070.32170.032*
C60.2417 (5)0.2710 (4)0.29130 (19)0.0315 (10)
H60.25470.21870.26170.038*
C70.1270 (5)0.3147 (4)0.30498 (19)0.0296 (9)
H70.05090.29740.28580.036*
C80.4383 (4)0.5616 (4)0.64961 (17)0.0205 (7)
H8A0.50740.57720.67600.025*
H8B0.38450.49850.66480.025*
C90.3594 (4)0.6709 (4)0.64269 (16)0.0196 (7)
H9A0.28780.65490.61770.024*
H9B0.32400.69480.67840.024*
C100.3644 (4)0.8723 (4)0.60019 (17)0.0202 (8)
H10A0.42400.93630.59080.024*
H10B0.31790.85050.56660.024*
C110.2721 (4)0.9156 (4)0.64173 (17)0.0209 (8)
C120.1429 (5)0.8797 (5)0.64632 (19)0.0309 (11)
H120.10170.82390.62370.037*
C130.0854 (5)0.9420 (5)0.6908 (2)0.0340 (11)
H13−0.00050.93120.70130.041*
C140.1650 (5)1.0182 (5)0.7170 (2)0.0336 (10)
H140.14031.06510.74720.040*
C150.5898 (4)0.4310 (4)0.6089 (2)0.0243 (8)
H15A0.60160.38190.57600.029*
H15B0.55900.37980.63870.029*
C160.7168 (4)0.4837 (4)0.62527 (18)0.0235 (8)
H16A0.70490.53820.65630.028*
H16B0.77550.42080.63700.028*
C170.8947 (4)0.6105 (5)0.5889 (2)0.0337 (11)
H17A0.87850.67890.61270.040*0.868 (6)
H17B0.93040.63960.55410.040*0.868 (6)
H17C0.87350.68760.60500.040*0.132 (6)
H17D0.93550.62580.55320.040*0.132 (6)
S3A1.04963 (14)0.40627 (17)0.58903 (9)0.0441 (6)0.868 (6)
C18A0.9893 (7)0.5305 (6)0.6160 (3)0.0322 (13)*0.868 (6)
C19A1.0385 (6)0.5521 (6)0.6685 (3)0.0331 (12)*0.868 (6)
H19A1.01770.61780.69050.040*0.868 (6)
C20A1.1234 (8)0.4622 (7)0.6835 (3)0.0493 (18)*0.868 (6)
H20A1.16800.46170.71720.059*0.868 (6)
C21A1.1351 (8)0.3783 (7)0.6464 (3)0.0448 (17)*0.868 (6)
H21A1.18560.31030.65130.054*0.868 (6)
S3B1.0412 (10)0.6016 (10)0.6856 (4)0.033 (3)*0.132 (6)
C18B0.993 (4)0.554 (3)0.6254 (12)0.033 (3)*0.132 (6)
C19B1.054 (4)0.447 (3)0.6152 (12)0.033 (3)*0.132 (6)
H19B1.04740.40430.58190.040*0.132 (6)
C20B1.128 (4)0.408 (2)0.6616 (14)0.033 (3)*0.132 (6)
H20B1.16920.33440.66400.040*0.132 (6)
C21B1.132 (3)0.489 (3)0.7001 (13)0.033 (3)*0.132 (6)
H21B1.18210.48330.73230.040*0.132 (6)
U11U22U33U12U13U23
I10.01816 (10)0.02106 (11)0.01888 (10)0.00339 (9)0.00220 (9)0.00444 (9)
I20.0504 (2)0.02224 (13)0.03961 (17)−0.01073 (13)−0.01876 (15)0.00445 (12)
I30.03868 (16)0.02779 (14)0.03580 (15)−0.00952 (12)−0.01948 (13)0.00415 (12)
S20.0324 (6)0.0314 (6)0.0298 (5)0.0004 (5)0.0018 (5)−0.0100 (4)
N10.0152 (14)0.0155 (14)0.0200 (15)0.0018 (12)−0.0020 (12)−0.0027 (12)
N20.0193 (14)0.0213 (15)0.0221 (15)−0.0023 (13)−0.0029 (13)−0.0018 (12)
N30.0152 (14)0.0196 (15)0.0189 (15)−0.0007 (11)−0.0005 (12)−0.0024 (12)
N40.0216 (17)0.0277 (18)0.0248 (17)0.0067 (14)0.0015 (14)0.0108 (14)
C10.0190 (18)0.0216 (19)0.0223 (18)−0.0027 (15)−0.0032 (15)0.0002 (15)
C20.0193 (17)0.0244 (19)0.024 (2)−0.0032 (15)0.0001 (14)−0.0034 (15)
C30.034 (2)0.030 (2)0.0179 (18)−0.0056 (18)0.0019 (17)0.0004 (16)
S10.0268 (6)0.0249 (5)0.0334 (6)0.0016 (4)−0.0023 (4)−0.0020 (4)
C40.0248 (19)0.0242 (19)0.026 (2)−0.0003 (17)−0.0041 (17)0.0008 (16)
C50.033 (2)0.026 (2)0.0215 (17)−0.0029 (19)−0.0073 (16)0.0021 (16)
C60.047 (3)0.028 (2)0.0199 (19)0.0038 (19)−0.0049 (19)0.0035 (17)
C70.035 (2)0.027 (2)0.027 (2)−0.0053 (18)−0.0090 (17)0.0038 (17)
C80.0180 (17)0.0239 (19)0.0196 (18)−0.0032 (14)−0.0006 (14)0.0003 (15)
C90.0171 (17)0.0211 (18)0.0208 (17)−0.0004 (13)0.0043 (13)−0.0005 (14)
C100.023 (2)0.0185 (17)0.0191 (17)0.0024 (14)0.0001 (14)−0.0026 (13)
C110.0221 (19)0.0207 (18)0.0200 (18)0.0051 (15)−0.0031 (15)−0.0042 (14)
C120.030 (2)0.040 (3)0.0221 (19)0.024 (2)0.0050 (17)−0.0012 (18)
C130.025 (2)0.044 (3)0.034 (2)0.010 (2)−0.0009 (19)−0.008 (2)
C140.032 (2)0.042 (3)0.027 (2)0.012 (2)0.0066 (19)−0.0079 (19)
C150.0193 (19)0.023 (2)0.030 (2)0.0009 (15)0.0007 (15)0.0011 (17)
C160.0158 (18)0.027 (2)0.027 (2)0.0045 (15)0.0024 (15)0.0129 (16)
C170.0174 (19)0.043 (3)0.041 (3)0.0009 (18)−0.0022 (19)0.024 (2)
S3A0.0175 (6)0.0484 (11)0.0664 (13)0.0046 (6)0.0020 (7)0.0329 (9)
S2—C141.706 (5)C9—H9B0.9900
S2—C111.723 (4)C10—C111.493 (6)
N1—C11.468 (5)C10—H10A0.9900
N1—C81.476 (5)C10—H10B0.9900
N1—C151.477 (6)C11—C121.427 (7)
N2—C21.506 (5)C12—C131.436 (7)
N2—C31.514 (6)C12—H120.9500
N2—H21N0.9200C13—C141.368 (8)
N2—H22N0.9200C13—H130.9500
N3—C91.493 (5)C14—H140.9500
N3—C101.512 (5)C15—C161.522 (6)
N3—H31N0.9200C15—H15A0.9900
N3—H32N0.9200C15—H15B0.9900
N4—C161.492 (5)C16—H16A0.9900
N4—C171.501 (6)C16—H16B0.9900
N4—H41N0.9200C17—C18A1.507 (8)
N4—H42N0.9200C17—C18B1.51 (2)
C1—C21.519 (6)C17—H17A0.9900
C1—H1A0.9900C17—H17B0.9900
C1—H1B0.9900C17—H17C0.9900
C2—H2A0.9900C17—H17D0.9900
C2—H2B0.9900S3A—C18A1.690 (6)
C3—C41.506 (6)S3A—C21A1.700 (7)
C3—H3A0.9900C18A—C19A1.409 (8)
C3—H3B0.9900C19A—C20A1.411 (9)
S1—C71.702 (5)C19A—H19A0.9500
S1—C41.724 (5)C20A—C21A1.327 (10)
C4—C51.382 (6)C20A—H20A0.9500
C5—C61.429 (6)C21A—H21A0.9500
C5—H50.9500S3B—C21B1.641 (16)
C6—C71.350 (7)S3B—C18B1.655 (16)
C6—H60.9500C18B—C19B1.406 (17)
C7—H70.9500C19B—C20B1.448 (17)
C8—C91.510 (6)C19B—H19B0.9500
C8—H8A0.9900C20B—C21B1.322 (17)
C8—H8B0.9900C20B—H20B0.9500
C9—H9A0.9900C21B—H21B0.9500
C14—S2—C1191.7 (2)H10A—C10—H10B107.9
C1—N1—C8110.8 (3)C12—C11—C10125.5 (4)
C1—N1—C15109.5 (3)C12—C11—S2112.8 (3)
C8—N1—C15108.9 (3)C10—C11—S2121.7 (3)
C2—N2—C3110.6 (3)C11—C12—C13108.7 (5)
C2—N2—H21N109.5C11—C12—H12125.7
C3—N2—H21N109.5C13—C12—H12125.7
C2—N2—H22N109.5C14—C13—C12114.3 (5)
C3—N2—H22N109.5C14—C13—H13122.8
H21N—N2—H22N108.1C12—C13—H13122.8
C9—N3—C10114.3 (3)C13—C14—S2112.6 (4)
C9—N3—H31N108.7C13—C14—H14123.7
C10—N3—H31N108.7S2—C14—H14123.7
C9—N3—H32N108.7N1—C15—C16112.1 (4)
C10—N3—H32N108.7N1—C15—H15A109.2
H31N—N3—H32N107.6C16—C15—H15A109.2
C16—N4—C17115.5 (4)N1—C15—H15B109.2
C16—N4—H41N108.4C16—C15—H15B109.2
C17—N4—H41N108.4H15A—C15—H15B107.9
C16—N4—H42N108.4N4—C16—C15109.5 (4)
C17—N4—H42N108.4N4—C16—H16A109.8
H41N—N4—H42N107.5C15—C16—H16A109.8
N1—C1—C2109.4 (3)N4—C16—H16B109.8
N1—C1—H1A109.8C15—C16—H16B109.8
C2—C1—H1A109.8H16A—C16—H16B108.2
N1—C1—H1B109.8N4—C17—C18A111.1 (5)
C2—C1—H1B109.8N4—C17—C18B119.4 (19)
H1A—C1—H1B108.2N4—C17—H17A109.4
N2—C2—C1110.2 (3)C18A—C17—H17A109.4
N2—C2—H2A109.6C18B—C17—H17A96.2
C1—C2—H2A109.6N4—C17—H17B109.4
N2—C2—H2B109.6C18A—C17—H17B109.4
C1—C2—H2B109.6C18B—C17—H17B113.2
H2A—C2—H2B108.1H17A—C17—H17B108.0
C4—C3—N2113.8 (4)N4—C17—H17C107.5
C4—C3—H3A108.8C18A—C17—H17C120.9
N2—C3—H3A108.8C18B—C17—H17C107.5
C4—C3—H3B108.8H17B—C17—H17C97.5
N2—C3—H3B108.8N4—C17—H17D107.5
H3A—C3—H3B107.7C18A—C17—H17D102.1
C7—S1—C491.8 (2)C18B—C17—H17D107.5
C5—C4—C3125.2 (4)H17A—C17—H17D117.2
C5—C4—S1111.5 (3)H17C—C17—H17D107.0
C3—C4—S1122.9 (4)C18A—S3A—C21A91.9 (3)
C4—C5—C6111.2 (4)C19A—C18A—C17122.7 (6)
C4—C5—H5124.4C19A—C18A—S3A111.4 (5)
C6—C5—H5124.4C17—C18A—S3A125.8 (5)
C7—C6—C5113.2 (4)C18A—C19A—C20A110.2 (6)
C7—C6—H6123.4C18A—C19A—H19A124.9
C5—C6—H6123.4C20A—C19A—H19A124.9
C6—C7—S1112.3 (4)C21A—C20A—C19A113.9 (7)
C6—C7—H7123.8C21A—C20A—H20A123.0
S1—C7—H7123.8C19A—C20A—H20A123.0
N1—C8—C9112.0 (3)C20A—C21A—S3A112.5 (6)
N1—C8—H8A109.2C20A—C21A—H21A123.8
C9—C8—H8A109.2S3A—C21A—H21A123.8
N1—C8—H8B109.2C21B—S3B—C18B96.6 (11)
C9—C8—H8B109.2C19B—C18B—C17125.6 (18)
H8A—C8—H8B107.9C19B—C18B—S3B107.7 (14)
N3—C9—C8110.1 (3)C17—C18B—S3B126.6 (17)
N3—C9—H9A109.6C18B—C19B—C20B111.8 (16)
C8—C9—H9A109.6C18B—C19B—H19B124.1
N3—C9—H9B109.6C20B—C19B—H19B124.1
C8—C9—H9B109.6C21B—C20B—C19B111.5 (17)
H9A—C9—H9B108.1C21B—C20B—H20B124.2
C11—C10—N3112.3 (3)C19B—C20B—H20B124.2
C11—C10—H10A109.1C20B—C21B—S3B111.9 (15)
N3—C10—H10A109.1C20B—C21B—H21B124.0
C11—C10—H10B109.1S3B—C21B—H21B124.0
N3—C10—H10B109.1
C8—N1—C1—C2156.4 (4)C1—N1—C15—C16156.8 (4)
C15—N1—C1—C2−83.5 (4)C8—N1—C15—C16−82.0 (4)
C3—N2—C2—C1174.6 (4)C17—N4—C16—C15176.8 (4)
N1—C1—C2—N2−178.7 (3)N1—C15—C16—N4−66.4 (5)
C2—N2—C3—C4167.0 (4)C16—N4—C17—C18A50.2 (6)
N2—C3—C4—C5−128.0 (5)C16—N4—C17—C18B38.5 (15)
N2—C3—C4—S160.0 (5)N4—C17—C18A—C19A−118.1 (7)
C7—S1—C4—C50.3 (4)C18B—C17—C18A—C19A12 (9)
C7—S1—C4—C3173.3 (4)N4—C17—C18A—S3A61.9 (7)
C3—C4—C5—C6−173.7 (4)C18B—C17—C18A—S3A−168 (10)
S1—C4—C5—C6−0.9 (5)C21A—S3A—C18A—C19A2.0 (6)
C4—C5—C6—C71.1 (6)C21A—S3A—C18A—C17−178.0 (7)
C5—C6—C7—S1−0.9 (6)C17—C18A—C19A—C20A179.3 (7)
C4—S1—C7—C60.3 (4)S3A—C18A—C19A—C20A−0.7 (8)
C1—N1—C8—C9−71.3 (4)C18A—C19A—C20A—C21A−1.4 (10)
C15—N1—C8—C9168.2 (3)C19A—C20A—C21A—S3A3.0 (10)
C10—N3—C9—C8167.4 (3)C18A—S3A—C21A—C20A−2.9 (7)
N1—C8—C9—N3−59.3 (4)N4—C17—C18B—C19B62 (5)
C9—N3—C10—C1151.0 (4)C18A—C17—C18B—C19B7(6)
N3—C10—C11—C12−91.8 (5)N4—C17—C18B—S3B−114 (3)
N3—C10—C11—S289.5 (4)C18A—C17—C18B—S3B−169 (13)
C14—S2—C11—C120.6 (4)C21B—S3B—C18B—C19B−2(4)
C14—S2—C11—C10179.4 (4)C21B—S3B—C18B—C17175 (4)
C10—C11—C12—C13−179.4 (4)C17—C18B—C19B—C20B−172 (4)
S2—C11—C12—C13−0.6 (5)S3B—C18B—C19B—C20B5(5)
C11—C12—C13—C140.3 (6)C18B—C19B—C20B—C21B−7(6)
C12—C13—C14—S20.1 (6)C19B—C20B—C21B—S3B5(5)
C11—S2—C14—C13−0.4 (4)C18B—S3B—C21B—C20B−2(4)
D—H···AD—HH···AD···AD—H···A
N2—H21N···I1i0.922.793.557 (4)142
N2—H22N···I20.922.673.543 (4)160
N3—H31N···I10.922.783.547 (3)142
N3—H32N···I30.922.593.460 (3)158
N4—H41N···I10.922.733.553 (4)150
N4—H42N···I2ii0.922.573.479 (4)172
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H21N⋯I1i0.922.793.557 (4)142
N2—H22N⋯I20.922.673.543 (4)160
N3—H31N⋯I10.922.783.547 (3)142
N3—H32N⋯I30.922.593.460 (3)158
N4—H41N⋯I10.922.733.553 (4)150
N4—H42N⋯I2ii0.922.573.479 (4)172

Symmetry codes: (i) ; (ii) .

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