Literature DB >> 21588957

(E)-5,6-Dimeth-oxy-2-(pyridin-4-yl-methyl-idene)-2,3-dihydro-1H-inden-1-one.

Mohamed Ashraf Ali, Rusli Ismail, Soo Choon Tan, Chin Sing Yeap, Hoong-Kun Fun.   

Abstract

The mol-ecule of the title compound, C(17)H(15)NO(3), is slightly twisted, with a dihedral angle of 12.12 (3)° between the dihydro-indenone group and the pyridine ring. In the crystal, mol-ecules are connected into layers parallel to the ab plane via inter-molecular C-H⋯O hydrogen bonds. Weak π-π [centroid-centroid distance = 3.5680 (6) Å] inter-actions are also observed.

Entities:  

Year:  2010        PMID: 21588957      PMCID: PMC3009365          DOI: 10.1107/S1600536810039486

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background and the biological activity of chalcone derivatives, see: Nowakowska (2008 ▶); Akihisa et al. (2006 ▶); Narender et al. (2005 ▶); Zhang et al. (2006 ▶); Dicarlo et al. (1999 ▶); Heidenreich et al. (2008 ▶); Syed et al. (2008 ▶); D’Archivio et al. (2008 ▶). For a related structure, see: Ali et al. (2010 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C17H15NO3 M = 281.30 Monoclinic, a = 10.7572 (14) Å b = 8.6057 (11) Å c = 17.2961 (17) Å β = 123.394 (6)° V = 1336.8 (3) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 100 K 0.45 × 0.32 × 0.23 mm

Data collection

Bruker APEXII Duo CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.958, T max = 0.979 21745 measured reflections 5874 independent reflections 5138 reflections with I > 2σ(I) R int = 0.023

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.132 S = 1.10 5874 reflections 192 parameters H-atom parameters constrained Δρmax = 0.61 e Å−3 Δρmin = −0.27 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810039486/rz2492sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810039486/rz2492Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H15NO3F(000) = 592
Mr = 281.30Dx = 1.398 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 9933 reflections
a = 10.7572 (14) Åθ = 2.8–35.1°
b = 8.6057 (11) ŵ = 0.10 mm1
c = 17.2961 (17) ÅT = 100 K
β = 123.394 (6)°Block, yellow
V = 1336.8 (3) Å30.45 × 0.32 × 0.23 mm
Z = 4
Bruker APEXII Duo CCD area-detector diffractometer5874 independent reflections
Radiation source: fine-focus sealed tube5138 reflections with I > 2σ(I)
graphiteRint = 0.023
φ and ω scansθmax = 35.1°, θmin = 2.8°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −17→17
Tmin = 0.958, Tmax = 0.979k = −13→13
21745 measured reflectionsl = −17→27
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.132H-atom parameters constrained
S = 1.10w = 1/[σ2(Fo2) + (0.0783P)2 + 0.2242P] where P = (Fo2 + 2Fc2)/3
5874 reflections(Δ/σ)max < 0.001
192 parametersΔρmax = 0.61 e Å3
0 restraintsΔρmin = −0.26 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.32457 (7)0.81081 (8)−0.16256 (4)0.02006 (13)
O20.80183 (6)0.43182 (7)−0.05682 (4)0.01665 (11)
O30.92680 (6)0.42839 (7)0.11848 (4)0.01546 (11)
N10.16589 (8)1.13656 (9)0.15678 (5)0.01914 (13)
C10.41258 (8)0.78448 (8)−0.07968 (5)0.01273 (12)
C20.54736 (7)0.68903 (7)−0.03693 (4)0.01082 (11)
C30.60522 (8)0.60592 (8)−0.08026 (4)0.01211 (12)
H3A0.55870.6093−0.14420.015*
C40.73270 (7)0.51920 (8)−0.02574 (4)0.01175 (12)
C50.80361 (7)0.51765 (8)0.07250 (4)0.01137 (11)
C60.74738 (7)0.60432 (8)0.11466 (4)0.01135 (11)
H6A0.79550.60550.17870.014*
C70.61696 (7)0.68941 (7)0.05839 (4)0.01039 (11)
C80.53304 (8)0.78599 (8)0.08831 (4)0.01196 (12)
H8A0.50180.72330.12130.014*
H8B0.59340.87170.12750.014*
C90.40070 (7)0.84391 (8)−0.00227 (4)0.01164 (11)
C100.28495 (8)0.93423 (8)−0.02118 (5)0.01312 (12)
H10A0.21760.9567−0.08350.016*
C110.24992 (7)1.00219 (8)0.04230 (5)0.01233 (12)
C120.31954 (9)0.96061 (10)0.13540 (5)0.01933 (15)
H12A0.39650.88830.16180.023*
C130.27285 (10)1.02821 (11)0.18809 (6)0.02310 (17)
H13A0.31880.99620.24930.028*
C140.10022 (8)1.17804 (9)0.06768 (5)0.01567 (13)
H14A0.02621.25360.04400.019*
C150.13705 (8)1.11388 (8)0.00888 (5)0.01385 (12)
H15A0.08661.1453−0.05270.017*
C160.74321 (9)0.43840 (10)−0.15362 (5)0.01808 (14)
H16A0.80140.3730−0.16700.027*
H16B0.74710.5435−0.17080.027*
H16C0.64180.4032−0.18810.027*
C171.00081 (9)0.41893 (10)0.21693 (5)0.01939 (14)
H17A1.08490.35050.24150.029*
H17B0.93300.37940.23190.029*
H17C1.03420.52050.24340.029*
U11U22U33U12U13U23
O10.0204 (3)0.0275 (3)0.0098 (2)0.0087 (2)0.0067 (2)0.00324 (19)
O20.0182 (2)0.0220 (3)0.0120 (2)0.00551 (19)0.00975 (19)−0.00182 (18)
O30.0142 (2)0.0200 (2)0.0111 (2)0.00625 (18)0.00627 (18)0.00077 (17)
N10.0189 (3)0.0226 (3)0.0175 (3)0.0056 (2)0.0109 (2)−0.0015 (2)
C10.0138 (3)0.0142 (3)0.0106 (3)0.0021 (2)0.0070 (2)0.0008 (2)
C20.0119 (2)0.0118 (2)0.0096 (2)0.00066 (19)0.0065 (2)−0.00052 (19)
C30.0132 (3)0.0140 (3)0.0095 (2)0.0003 (2)0.0065 (2)−0.00105 (19)
C40.0130 (3)0.0135 (3)0.0106 (2)0.0005 (2)0.0076 (2)−0.00177 (19)
C50.0115 (2)0.0128 (3)0.0104 (2)0.00140 (19)0.0064 (2)−0.00031 (19)
C60.0122 (2)0.0129 (3)0.0095 (2)0.00100 (19)0.0063 (2)−0.00042 (19)
C70.0118 (2)0.0111 (2)0.0094 (2)0.00076 (19)0.0066 (2)−0.00013 (18)
C80.0136 (3)0.0131 (3)0.0101 (2)0.0024 (2)0.0071 (2)0.00030 (19)
C90.0131 (3)0.0122 (3)0.0105 (2)0.0015 (2)0.0071 (2)0.00038 (19)
C100.0138 (3)0.0144 (3)0.0115 (3)0.0024 (2)0.0072 (2)0.0007 (2)
C110.0121 (3)0.0128 (3)0.0129 (3)0.0015 (2)0.0074 (2)−0.0003 (2)
C120.0212 (3)0.0241 (3)0.0141 (3)0.0106 (3)0.0105 (3)0.0025 (2)
C130.0249 (4)0.0309 (4)0.0149 (3)0.0132 (3)0.0118 (3)0.0027 (3)
C140.0146 (3)0.0147 (3)0.0185 (3)0.0023 (2)0.0096 (3)−0.0008 (2)
C150.0131 (3)0.0139 (3)0.0154 (3)0.0019 (2)0.0083 (2)0.0009 (2)
C160.0212 (3)0.0235 (3)0.0127 (3)0.0006 (3)0.0113 (3)−0.0035 (2)
C170.0184 (3)0.0259 (4)0.0118 (3)0.0083 (3)0.0070 (2)0.0035 (2)
O1—C11.2283 (8)C8—H8A0.9700
O2—C41.3593 (8)C8—H8B0.9700
O2—C161.4289 (9)C9—C101.3465 (9)
O3—C51.3486 (8)C10—C111.4646 (10)
O3—C171.4310 (9)C10—H10A0.9300
N1—C131.3419 (10)C11—C121.3980 (10)
N1—C141.3427 (10)C11—C151.3999 (10)
C1—C21.4640 (10)C12—C131.3874 (11)
C1—C91.5029 (9)C12—H12A0.9300
C2—C71.3857 (9)C13—H13A0.9300
C2—C31.4050 (9)C14—C151.3928 (10)
C3—C41.3796 (9)C14—H14A0.9300
C3—H3A0.9300C15—H15A0.9300
C4—C51.4291 (9)C16—H16A0.9600
C5—C61.3926 (9)C16—H16B0.9600
C6—C71.3959 (9)C16—H16C0.9600
C6—H6A0.9300C17—H17A0.9600
C7—C81.5124 (9)C17—H17B0.9600
C8—C91.5081 (9)C17—H17C0.9600
C4—O2—C16117.18 (6)C1—C9—C8108.57 (5)
C5—O3—C17117.17 (6)C9—C10—C11129.30 (6)
C13—N1—C14116.14 (7)C9—C10—H10A115.3
O1—C1—C2127.28 (6)C11—C10—H10A115.3
O1—C1—C9126.02 (6)C12—C11—C15116.38 (6)
C2—C1—C9106.69 (5)C12—C11—C10124.44 (6)
C7—C2—C3121.87 (6)C15—C11—C10119.16 (6)
C7—C2—C1109.63 (5)C13—C12—C11119.41 (7)
C3—C2—C1128.51 (6)C13—C12—H12A120.3
C4—C3—C2118.44 (6)C11—C12—H12A120.3
C4—C3—H3A120.8N1—C13—C12124.49 (7)
C2—C3—H3A120.8N1—C13—H13A117.8
O2—C4—C3125.68 (6)C12—C13—H13A117.8
O2—C4—C5114.52 (6)N1—C14—C15123.45 (7)
C3—C4—C5119.80 (6)N1—C14—H14A118.3
O3—C5—C6124.43 (6)C15—C14—H14A118.3
O3—C5—C4114.50 (6)C14—C15—C11120.09 (7)
C6—C5—C4121.07 (6)C14—C15—H15A120.0
C5—C6—C7118.39 (6)C11—C15—H15A120.0
C5—C6—H6A120.8O2—C16—H16A109.5
C7—C6—H6A120.8O2—C16—H16B109.5
C2—C7—C6120.38 (6)H16A—C16—H16B109.5
C2—C7—C8112.02 (6)O2—C16—H16C109.5
C6—C7—C8127.58 (6)H16A—C16—H16C109.5
C9—C8—C7103.07 (5)H16B—C16—H16C109.5
C9—C8—H8A111.1O3—C17—H17A109.5
C7—C8—H8A111.1O3—C17—H17B109.5
C9—C8—H8B111.1H17A—C17—H17B109.5
C7—C8—H8B111.1O3—C17—H17C109.5
H8A—C8—H8B109.1H17A—C17—H17C109.5
C10—C9—C1120.04 (6)H17B—C17—H17C109.5
C10—C9—C8131.39 (6)
O1—C1—C2—C7179.48 (7)C5—C6—C7—C2−1.08 (10)
C9—C1—C2—C7−1.11 (8)C5—C6—C7—C8177.43 (6)
O1—C1—C2—C3−0.64 (12)C2—C7—C8—C90.57 (7)
C9—C1—C2—C3178.78 (7)C6—C7—C8—C9−178.05 (7)
C7—C2—C3—C41.86 (10)O1—C1—C9—C100.39 (12)
C1—C2—C3—C4−178.02 (7)C2—C1—C9—C10−179.04 (6)
C16—O2—C4—C34.42 (10)O1—C1—C9—C8−179.11 (7)
C16—O2—C4—C5−175.13 (6)C2—C1—C9—C81.46 (7)
C2—C3—C4—O2179.51 (6)C7—C8—C9—C10179.35 (7)
C2—C3—C4—C5−0.96 (10)C7—C8—C9—C1−1.23 (7)
C17—O3—C5—C62.22 (10)C1—C9—C10—C11178.89 (7)
C17—O3—C5—C4−178.48 (6)C8—C9—C10—C11−1.74 (13)
O2—C4—C5—O3−0.69 (9)C9—C10—C11—C12−12.38 (13)
C3—C4—C5—O3179.73 (6)C9—C10—C11—C15169.28 (7)
O2—C4—C5—C6178.64 (6)C15—C11—C12—C131.08 (12)
C3—C4—C5—C6−0.94 (10)C10—C11—C12—C13−177.30 (8)
O3—C5—C6—C7−178.78 (6)C14—N1—C13—C121.08 (14)
C4—C5—C6—C71.96 (10)C11—C12—C13—N1−1.95 (15)
C3—C2—C7—C6−0.83 (10)C13—N1—C14—C150.58 (12)
C1—C2—C7—C6179.06 (6)N1—C14—C15—C11−1.33 (12)
C3—C2—C7—C8−179.56 (6)C12—C11—C15—C140.43 (11)
C1—C2—C7—C80.33 (8)C10—C11—C15—C14178.90 (6)
D—H···AD—HH···AD···AD—H···A
C14—H14A···O2i0.932.573.4787 (12)167
C14—H14A···O3i0.932.573.2708 (12)133
C16—H16A···O1ii0.962.533.0486 (11)114
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C14—H14A⋯O2i0.932.573.4787 (12)167
C14—H14A⋯O3i0.932.573.2708 (12)133
C16—H16A⋯O1ii0.962.533.0486 (11)114

Symmetry codes: (i) ; (ii) .

  10 in total

Review 1.  A review of anti-infective and anti-inflammatory chalcones.

Authors:  Zdzisława Nowakowska
Journal:  Eur J Med Chem       Date:  2006-11-15       Impact factor: 6.514

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 3.  EAU guidelines on prostate cancer.

Authors:  Axel Heidenreich; Gunnar Aus; Michel Bolla; Steven Joniau; Vsevolod B Matveev; Hans Peter Schmid; Filliberto Zattoni
Journal:  Eur Urol       Date:  2007-09-19       Impact factor: 20.096

4.  Prenylated chalcones isolated from Crotalaria genus inhibits in vitro growth of the human malaria parasite Plasmodium falciparum.

Authors:  T Narender; K Tanvir; M Srinivasa Rao; K Srivastava; S K Puri
Journal:  Bioorg Med Chem Lett       Date:  2005-05-16       Impact factor: 2.823

Review 5.  Flavonoids: old and new aspects of a class of natural therapeutic drugs.

Authors:  G Di Carlo; N Mascolo; A A Izzo; F Capasso
Journal:  Life Sci       Date:  1999       Impact factor: 5.037

6.  Chalcones and other compounds from the exudates of Angelica keiskei and their cancer chemopreventive effects.

Authors:  Toshihiro Akihisa; Harukuni Tokuda; Daisuke Hasegawa; Motohiko Ukiya; Yumiko Kimura; Fumio Enjo; Takashi Suzuki; Hoyoku Nishino
Journal:  J Nat Prod       Date:  2006-01       Impact factor: 4.050

7.  (2E)-2-Benzyl-idene-5,6-dimethoxy-indan-1-one.

Authors:  Mohamed Ashraf Ali; Rusli Ismail; Soo Choon Tan; Chin Sing Yeap; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-09-11

Review 8.  Dietary agents for chemoprevention of prostate cancer.

Authors:  Deeba N Syed; Yewseok Suh; Farrukh Afaq; Hasan Mukhtar
Journal:  Cancer Lett       Date:  2008-04-18       Impact factor: 8.679

9.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20

10.  Modulatory effects of polyphenols on apoptosis induction: relevance for cancer prevention.

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Journal:  Int J Mol Sci       Date:  2008-02-28       Impact factor: 6.208

  10 in total
  3 in total

1.  (E)-2-(3-Chloro-benzyl-idene)-5,6-dimeth-oxy-2,3-dihydro-1H-inden-1-one.

Authors:  Mohamed Ashraf Ali; Rusli Ismail; Soo Choon Tan; Chin Sing Yeap; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-10-20

2.  3-Oxo-2,3-dihydro-1H-inden-4-yl acetate.

Authors:  Hong-Yi Lin; Che-Wei Chang; Hsing-Yang Tsai; Ming-Hui Luo; Kew-Yu Chen
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-10-06

3.  7-Meth-oxy-indan-1-one.

Authors:  Yuan Jay Chang; Kew-Yu Chen
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-10-03
  3 in total

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