Literature DB >> 21588947

4,4'-Bipyridine-cyclo-hexane-1,2,4,5-tetra-carb-oxy-lic acid (1/1).

Jian-Qiang Liu1.   

Abstract

In the title 1:1 adduct, C(10)H(8)N(2)·C(10)H(12)O(8), the dihedral angle between the pyridine rings in the 4,4-bipyridine molecule is 8.33 (13)°. In the crystal, the cyclo-hexane-1,2,4,5-tetra-carb-oxy-lic acid mol-ecules inter-act with each other through inter-molecular O-H⋯O hydrogen bonds, forming an infinite chain along the a axis, which is further linked perpendicularly by O-H⋯N hydrogen bonds involving bipyridine, resulting in a supra-molecular corrugated sheet parallel to the (110) plane.

Entities:  

Year:  2010        PMID: 21588947      PMCID: PMC3009091          DOI: 10.1107/S1600536810039024

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to crystal engineering, see: Desiraju (1989 ▶); Schultheiss et al. (2010 ▶); Ebenezer & Muthiah (2010 ▶); An et al. (2010 ▶). For a related flexible tetracarboxylic acid, see Holmes et al. (1987 ▶); Wang et al. (2009 ▶). For a related structure, see: Bhogala et al.(2005 ▶).

Experimental

Crystal data

C10H8N2·C10H12O8 M = 416.38 Monoclinic, a = 12.345 (3) Å b = 9.724 (2) Å c = 16.497 (4) Å β = 106.364 (3)° V = 1900.1 (8) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 298 K 0.22 × 0.15 × 0.08 mm

Data collection

Bruker APEXII area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2008 ▶) T min = 0.975, T max = 0.991 9330 measured reflections 3416 independent reflections 2243 reflections with I > 2σ(I) R int = 0.032

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.143 S = 1.05 3416 reflections 275 parameters H-atom parameters constrained Δρmax = 0.26 e Å−3 Δρmin = −0.22 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: APEX2; data reduction: APEX2; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPIII (Burnett & Johnson, 1996 ▶), ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810039024/dn2606sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810039024/dn2606Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H8N2·C10H12O8F(000) = 872
Mr = 416.38Dx = 1.456 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3417 reflections
a = 12.345 (3) Åθ = 1.7–25.2°
b = 9.724 (2) ŵ = 0.11 mm1
c = 16.497 (4) ÅT = 298 K
β = 106.364 (3)°Block, colourless
V = 1900.1 (8) Å30.22 × 0.15 × 0.08 mm
Z = 4
Bruker APEXII area-detector diffractometer3416 independent reflections
Radiation source: fine-focus sealed tube2243 reflections with I > 2σ(I)
graphiteRint = 0.032
φ and ω scanθmax = 25.2°, θmin = 1.7°
Absorption correction: multi-scan (SADABS; Sheldrick, 2008)h = −14→14
Tmin = 0.975, Tmax = 0.991k = −11→11
9330 measured reflectionsl = −19→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.047Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.143H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0639P)2 + 0.4389P] where P = (Fo2 + 2Fc2)/3
3416 reflections(Δ/σ)max < 0.001
275 parametersΔρmax = 0.26 e Å3
0 restraintsΔρmin = −0.22 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.27706 (14)0.44090 (19)0.44732 (12)0.0641 (5)
H10.29940.51680.46650.096*
O20.11097 (14)0.54658 (17)0.41482 (10)0.0518 (5)
O30.18983 (14)0.55768 (18)0.23240 (12)0.0636 (5)
O40.34420 (14)0.42876 (17)0.26978 (12)0.0589 (5)
H40.37560.50370.27940.088*
O5−0.04992 (17)0.3310 (2)0.45621 (11)0.0667 (5)
H5−0.08830.36810.48320.100*
O6−0.15670 (16)0.4586 (2)0.35120 (11)0.0692 (6)
O7−0.05944 (14)0.47589 (18)0.07724 (9)0.0553 (5)
O80.10445 (14)0.3927 (2)0.06854 (10)0.0578 (5)
H80.08520.43240.02290.087*
C110.0262 (2)0.4068 (2)0.10675 (14)0.0448 (6)
C120.04494 (19)0.3292 (2)0.18872 (13)0.0434 (6)
H120.01470.23650.17380.052*
C13−0.02428 (18)0.3930 (2)0.24293 (13)0.0439 (6)
H13A−0.00300.48870.25370.053*
H13B−0.10370.39000.21200.053*
C14−0.00665 (19)0.3186 (2)0.32665 (14)0.0447 (6)
H14−0.03320.22410.31300.054*
C15−0.0792 (2)0.3797 (3)0.37755 (15)0.0510 (6)
C160.11869 (19)0.3086 (2)0.37600 (14)0.0439 (6)
H160.12340.24630.42360.053*
C170.1676 (2)0.4448 (3)0.41336 (13)0.0448 (6)
C180.1851 (2)0.2407 (2)0.32092 (14)0.0462 (6)
H18A0.16100.14570.31100.055*
H18B0.26460.24050.35170.055*
C190.17057 (19)0.3116 (2)0.23536 (14)0.0426 (6)
H190.20320.25090.20110.051*
C200.23417 (19)0.4466 (2)0.24532 (13)0.0434 (6)
N10.64426 (18)1.3190 (2)0.48929 (14)0.0598 (6)
N20.45114 (19)0.6692 (2)0.31157 (14)0.0628 (6)
C10.3891 (2)0.7823 (3)0.2905 (2)0.0752 (9)
H1A0.31800.77430.25210.090*
C20.5531 (2)0.6854 (3)0.36420 (18)0.0708 (8)
H20.59920.60830.37840.085*
C30.5951 (2)0.8100 (3)0.39928 (17)0.0642 (8)
H30.66750.81540.43600.077*
C40.4243 (2)0.9105 (3)0.32249 (19)0.0713 (8)
H4A0.37740.98630.30560.086*
C50.5293 (2)0.9264 (3)0.37970 (15)0.0502 (6)
C60.5699 (2)1.0628 (3)0.41730 (15)0.0510 (6)
C70.6679 (2)1.0774 (3)0.4825 (2)0.0817 (10)
H70.71141.00050.50390.098*
C80.7015 (2)1.2050 (3)0.5157 (2)0.0809 (10)
H8A0.76821.21160.55920.097*
C90.5115 (2)1.1812 (3)0.39072 (19)0.0710 (8)
H90.44521.17820.34660.085*
C100.5494 (2)1.3050 (3)0.42825 (19)0.0770 (9)
H100.50591.38290.40960.092*
U11U22U33U12U13U23
O10.0506 (10)0.0539 (12)0.0736 (12)0.0025 (9)−0.0055 (9)−0.0150 (9)
O20.0551 (10)0.0423 (10)0.0511 (10)0.0043 (8)0.0035 (8)−0.0037 (7)
O30.0496 (10)0.0378 (11)0.0928 (14)−0.0003 (8)0.0027 (9)0.0034 (9)
O40.0451 (10)0.0509 (11)0.0739 (12)−0.0023 (8)0.0055 (9)−0.0018 (9)
O50.0850 (14)0.0675 (13)0.0526 (11)0.0182 (10)0.0275 (10)0.0121 (9)
O60.0627 (12)0.0789 (14)0.0641 (12)0.0200 (11)0.0148 (9)0.0068 (10)
O70.0520 (10)0.0667 (12)0.0430 (9)0.0097 (9)0.0066 (8)0.0042 (8)
O80.0573 (11)0.0720 (13)0.0431 (10)0.0095 (9)0.0123 (8)0.0055 (8)
C110.0442 (14)0.0421 (14)0.0432 (13)−0.0045 (11)0.0042 (11)−0.0098 (10)
C120.0472 (13)0.0361 (13)0.0405 (12)−0.0070 (10)0.0019 (10)−0.0041 (10)
C130.0406 (13)0.0433 (14)0.0429 (12)−0.0008 (11)0.0040 (10)0.0006 (10)
C140.0496 (13)0.0344 (13)0.0472 (13)−0.0021 (11)0.0090 (11)−0.0006 (10)
C150.0538 (15)0.0488 (16)0.0481 (14)−0.0035 (13)0.0106 (12)0.0012 (12)
C160.0499 (14)0.0350 (13)0.0435 (13)0.0012 (11)0.0079 (10)0.0055 (10)
C170.0506 (15)0.0448 (15)0.0341 (12)0.0025 (12)0.0038 (10)0.0021 (10)
C180.0528 (14)0.0309 (13)0.0500 (13)0.0029 (11)0.0064 (11)0.0011 (10)
C190.0460 (13)0.0346 (13)0.0447 (13)0.0006 (10)0.0085 (10)−0.0041 (10)
C200.0417 (13)0.0461 (15)0.0377 (12)−0.0015 (11)0.0037 (10)−0.0014 (10)
N10.0532 (13)0.0507 (14)0.0681 (14)−0.0042 (11)0.0051 (11)−0.0076 (11)
N20.0562 (14)0.0545 (15)0.0725 (15)−0.0120 (12)0.0098 (12)−0.0052 (11)
C10.0527 (17)0.064 (2)0.097 (2)−0.0059 (15)0.0005 (15)−0.0144 (17)
C20.0712 (19)0.0468 (17)0.081 (2)−0.0035 (14)0.0001 (16)0.0061 (14)
C30.0571 (16)0.0519 (17)0.0703 (18)−0.0051 (13)−0.0037 (13)0.0025 (13)
C40.0489 (16)0.0555 (18)0.096 (2)−0.0009 (13)−0.0007 (15)−0.0136 (15)
C50.0472 (14)0.0479 (16)0.0551 (14)−0.0075 (12)0.0140 (11)−0.0017 (11)
C60.0438 (14)0.0524 (16)0.0554 (15)−0.0050 (12)0.0116 (11)−0.0009 (12)
C70.0556 (17)0.0535 (19)0.113 (3)0.0029 (14)−0.0137 (17)−0.0099 (17)
C80.0566 (18)0.063 (2)0.100 (2)−0.0029 (16)−0.0161 (16)−0.0139 (17)
C90.0581 (17)0.0552 (18)0.0795 (19)−0.0018 (14)−0.0135 (14)−0.0039 (14)
C100.0664 (19)0.0549 (19)0.090 (2)0.0023 (15)−0.0099 (16)−0.0040 (15)
O1—C171.310 (3)C18—H18A0.9700
O1—H10.8200C18—H18B0.9700
O2—C171.215 (3)C19—C201.515 (3)
O3—C201.202 (3)C19—H190.9800
O4—C201.315 (3)N1—C101.319 (3)
O4—H40.8200N1—C81.321 (3)
O5—C151.332 (3)N2—C21.321 (3)
O5—H50.8200N2—C11.329 (4)
O6—C151.207 (3)C1—C41.375 (4)
O7—C111.231 (3)C1—H1A0.9300
O8—C111.301 (3)C2—C31.379 (4)
O8—H80.8200C2—H20.9300
C11—C121.508 (3)C3—C51.378 (4)
C12—C131.532 (3)C3—H30.9300
C12—C191.534 (3)C4—C51.380 (3)
C12—H120.9800C4—H4A0.9300
C13—C141.520 (3)C5—C61.490 (3)
C13—H13A0.9700C6—C91.364 (4)
C13—H13B0.9700C6—C71.381 (4)
C14—C151.512 (3)C7—C81.372 (4)
C14—C161.535 (3)C7—H70.9300
C14—H140.9800C8—H8A0.9300
C16—C171.513 (3)C9—C101.374 (4)
C16—C181.534 (3)C9—H90.9300
C16—H160.9800C10—H100.9300
C18—C191.535 (3)
C17—O1—H1109.5H18A—C18—H18B107.6
C20—O4—H4109.5C20—C19—C12112.18 (19)
C15—O5—H5109.5C20—C19—C18111.54 (18)
C11—O8—H8109.5C12—C19—C18110.52 (19)
O7—C11—O8122.5 (2)C20—C19—H19107.5
O7—C11—C12121.7 (2)C12—C19—H19107.5
O8—C11—C12115.7 (2)C18—C19—H19107.5
C11—C12—C13110.54 (19)O3—C20—O4123.5 (2)
C11—C12—C19112.56 (19)O3—C20—C19124.3 (2)
C13—C12—C19113.81 (18)O4—C20—C19112.2 (2)
C11—C12—H12106.5C10—N1—C8116.2 (2)
C13—C12—H12106.5C2—N2—C1116.4 (2)
C19—C12—H12106.5N2—C1—C4123.6 (3)
C14—C13—C12112.17 (19)N2—C1—H1A118.2
C14—C13—H13A109.2C4—C1—H1A118.2
C12—C13—H13A109.2N2—C2—C3123.8 (3)
C14—C13—H13B109.2N2—C2—H2118.1
C12—C13—H13B109.2C3—C2—H2118.1
H13A—C13—H13B107.9C5—C3—C2119.8 (2)
C15—C14—C13111.2 (2)C5—C3—H3120.1
C15—C14—C16113.39 (19)C2—C3—H3120.1
C13—C14—C16112.16 (19)C1—C4—C5119.9 (3)
C15—C14—H14106.5C1—C4—H4A120.1
C13—C14—H14106.5C5—C4—H4A120.1
C16—C14—H14106.5C3—C5—C4116.5 (2)
O6—C15—O5123.2 (2)C3—C5—C6121.8 (2)
O6—C15—C14125.7 (2)C4—C5—C6121.7 (2)
O5—C15—C14111.1 (2)C9—C6—C7115.6 (2)
C17—C16—C18113.58 (19)C9—C6—C5122.2 (2)
C17—C16—C14112.76 (19)C7—C6—C5122.3 (2)
C18—C16—C14109.87 (18)C8—C7—C6120.2 (3)
C17—C16—H16106.7C8—C7—H7119.9
C18—C16—H16106.7C6—C7—H7119.9
C14—C16—H16106.7N1—C8—C7123.7 (3)
O2—C17—O1123.0 (2)N1—C8—H8A118.2
O2—C17—C16123.7 (2)C7—C8—H8A118.2
O1—C17—C16113.2 (2)C6—C9—C10120.9 (2)
C16—C18—C19114.08 (18)C6—C9—H9119.6
C16—C18—H18A108.7C10—C9—H9119.6
C19—C18—H18A108.7N1—C10—C9123.4 (3)
C16—C18—H18B108.7N1—C10—H10118.3
C19—C18—H18B108.7C9—C10—H10118.3
D—H···AD—HH···AD···AD—H···A
O1—H1···N1i0.821.812.630 (3)177
O4—H4···N20.821.862.678 (3)175
O5—H5···O2ii0.821.962.723 (2)153
O8—H8···O7iii0.821.822.641 (2)174
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯N1i0.821.812.630 (3)177
O4—H4⋯N20.821.862.678 (3)175
O5—H5⋯O2ii0.821.962.723 (2)153
O8—H8⋯O7iii0.821.822.641 (2)174

Symmetry codes: (i) ; (ii) ; (iii) .

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