Literature DB >> 21588649

Nifedipine-pyrazine (2/1).

Nate Schultheiss1, Melanie Roe, Jared P Smit.   

Abstract

In the title compound, 2C(17)H(18)N(2)O(6)·C(4)H(4)N(2) [systematic name: 3,5-dimethyl 2,6-dimethyl-4-(2-nitro-phen-yl)-1,4-di-hydro-pyridine-3,5-dicarboxyl-ate-pyrazine (2/1)], the complete pyrazine molecule is generated by crystallographic inversion symmetry. The center of the pyrazine ring lies on an inversion center. The nifedipine mol-ecules are linked into chains along the c axis through N-H⋯O hydrogen bonds, while the pyrazine mol-ecules are organized in the structure through van der Waals inter-actions.

Entities:  

Year:  2010        PMID: 21588649      PMCID: PMC3008143          DOI: 10.1107/S1600536810031703

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

Co-crystalline materials are of pharmaceutical inter­est due to their ability to alter the physicochemical properties of active pharmaceutical ingredients (APIs) (Schultheiss et al., 2009 ▶) and provide drug repositioning or life-cycle management (Trask, 2007 ▶). The corresponding crystal structure of nifedipine has been reported (Triggle et al., 2003 ▶) and it also forms chains through N—H⋯O hydrogen bonds. Other crystalline forms also exist: polymorphs (Burger et al., 1996 ▶) solvates/hydrates (Caira et al., 2003 ▶) and a metal complex (Bontchev et al., 2003 ▶), as well as a non-crystalline, amorphous phase (Miyazaki et al., 2007 ▶).

Experimental

Crystal data

C19H20N3O6 M = 386.38 Monoclinic, a = 13.6278 (14) Å b = 9.1594 (9) Å c = 14.4432 (14) Å β = 94.841 (4)° V = 1796.4 (3) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 120 K 0.24 × 0.18 × 0.10 mm

Data collection

Bruker APEXII CCD diffractometer 27572 measured reflections 6070 independent reflections 4916 reflections with I > 2σ(I) R int = 0.036

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.125 S = 1.07 6070 reflections 261 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.48 e Å−3 Δρmin = −0.24 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶), PLATON and Mercury (Macrae et al., 2006 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810031703/kj2152sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810031703/kj2152Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H20N3O6F(000) = 812
Mr = 386.38Dx = 1.429 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 9767 reflections
a = 13.6278 (14) Åθ = 2.6–31.7°
b = 9.1594 (9) ŵ = 0.11 mm1
c = 14.4432 (14) ÅT = 120 K
β = 94.841 (4)°Prism, colourless
V = 1796.4 (3) Å30.24 × 0.18 × 0.10 mm
Z = 4
Bruker APEXII CCD diffractometer4916 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.036
graphiteθmax = 31.8°, θmin = 2.6°
φ and ω scansh = −20→19
27572 measured reflectionsk = −13→13
6070 independent reflectionsl = −17→21
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.043Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.125H atoms treated by a mixture of independent and constrained refinement
S = 1.07w = 1/[σ2(Fo2) + (0.070P)2 + 0.250P] where P = (Fo2 + 2Fc2)/3
6070 reflections(Δ/σ)max < 0.001
261 parametersΔρmax = 0.48 e Å3
0 restraintsΔρmin = −0.24 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N110.91012 (7)0.66064 (10)0.58015 (6)0.01904 (17)
H110.9275 (12)0.6672 (17)0.6420 (12)0.033 (4)*
C120.96337 (7)0.73800 (11)0.52067 (6)0.01680 (18)
C130.92963 (7)0.74418 (11)0.42914 (6)0.01588 (17)
C140.82937 (7)0.68380 (10)0.39640 (6)0.01536 (17)
H140.83230.64310.33240.018*
C150.80215 (7)0.56174 (10)0.46039 (6)0.01635 (17)
C160.83786 (7)0.56204 (11)0.55095 (7)0.01793 (18)
C221.05495 (8)0.80615 (12)0.56668 (7)0.0214 (2)
H22A1.05590.91040.55150.032*
H22B1.11290.75860.54440.032*
H22C1.05580.79400.63420.032*
C230.98313 (7)0.80823 (11)0.35653 (7)0.01736 (18)
O231.06719 (5)0.87616 (9)0.38444 (5)0.02116 (16)
O240.95391 (6)0.80104 (11)0.27468 (5)0.0315 (2)
C250.73593 (7)0.44528 (11)0.42414 (7)0.01813 (18)
O250.71443 (6)0.45992 (8)0.33133 (5)0.02199 (16)
O260.70447 (6)0.34517 (9)0.46697 (6)0.02589 (17)
C260.80877 (9)0.46176 (12)0.62596 (7)0.0237 (2)
H26A0.73730.46600.62910.036*
H26B0.84180.49210.68580.036*
H26C0.82820.36160.61210.036*
C271.11954 (9)0.93700 (14)0.31148 (8)0.0264 (2)
H27A1.18180.97890.33800.040*
H27B1.07951.01360.27950.040*
H27C1.13300.86010.26710.040*
C280.65577 (9)0.34450 (13)0.28780 (8)0.0276 (2)
H28A0.64010.36760.22190.041*
H28B0.59460.33470.31840.041*
H28C0.69260.25260.29340.041*
C310.75049 (7)0.80317 (10)0.39303 (6)0.01571 (17)
C320.67448 (7)0.82130 (11)0.32317 (7)0.01755 (18)
N320.66655 (7)0.73025 (10)0.23900 (6)0.01976 (17)
O320.73861 (6)0.71650 (9)0.19529 (5)0.02539 (17)
O330.58615 (6)0.67540 (9)0.21593 (6)0.02713 (18)
C330.60043 (8)0.92431 (12)0.32730 (7)0.0219 (2)
H330.54970.93200.27820.026*
C340.60109 (8)1.01542 (12)0.40326 (8)0.0239 (2)
H340.55121.08720.40680.029*
C350.67529 (8)1.00121 (12)0.47455 (7)0.0227 (2)
H350.67631.06340.52730.027*
C360.74769 (8)0.89694 (11)0.46907 (7)0.01926 (19)
H360.79750.88860.51890.023*
N410.45265 (8)0.46068 (12)0.41368 (7)0.0302 (2)
C420.45577 (9)0.37242 (13)0.48684 (9)0.0289 (2)
H420.42480.27960.48050.035*
C430.50253 (9)0.41122 (14)0.57190 (8)0.0297 (2)
H430.50270.34390.62200.036*
U11U22U33U12U13U23
N110.0221 (4)0.0250 (4)0.0100 (3)−0.0011 (3)0.0008 (3)0.0011 (3)
C120.0176 (4)0.0209 (4)0.0119 (4)0.0010 (3)0.0011 (3)−0.0001 (3)
C130.0159 (4)0.0201 (4)0.0116 (4)−0.0002 (3)0.0012 (3)0.0004 (3)
C140.0169 (4)0.0183 (4)0.0109 (4)−0.0003 (3)0.0015 (3)−0.0002 (3)
C150.0170 (4)0.0175 (4)0.0147 (4)0.0003 (3)0.0025 (3)0.0005 (3)
C160.0199 (4)0.0197 (4)0.0145 (4)0.0015 (3)0.0032 (3)0.0013 (3)
C220.0200 (5)0.0293 (5)0.0143 (4)−0.0021 (4)−0.0014 (3)−0.0011 (4)
C230.0174 (4)0.0215 (4)0.0132 (4)0.0005 (3)0.0014 (3)−0.0002 (3)
O230.0211 (3)0.0285 (4)0.0141 (3)−0.0065 (3)0.0031 (3)−0.0004 (3)
O240.0279 (4)0.0550 (6)0.0111 (3)−0.0138 (4)−0.0004 (3)0.0043 (3)
C250.0182 (4)0.0187 (4)0.0178 (4)0.0024 (3)0.0029 (3)−0.0004 (3)
O250.0246 (4)0.0240 (4)0.0170 (3)−0.0059 (3)−0.0004 (3)−0.0019 (3)
O260.0308 (4)0.0224 (4)0.0247 (4)−0.0055 (3)0.0037 (3)0.0025 (3)
C260.0300 (5)0.0242 (5)0.0173 (4)−0.0007 (4)0.0043 (4)0.0057 (4)
C270.0270 (5)0.0335 (6)0.0196 (5)−0.0097 (4)0.0066 (4)0.0014 (4)
C280.0273 (5)0.0295 (5)0.0256 (5)−0.0089 (4)0.0003 (4)−0.0067 (4)
C310.0166 (4)0.0175 (4)0.0131 (4)−0.0010 (3)0.0018 (3)0.0015 (3)
C320.0188 (4)0.0202 (4)0.0135 (4)−0.0018 (3)0.0001 (3)0.0002 (3)
N320.0221 (4)0.0224 (4)0.0142 (4)0.0003 (3)−0.0022 (3)0.0010 (3)
O320.0270 (4)0.0339 (4)0.0155 (3)0.0015 (3)0.0033 (3)−0.0017 (3)
O330.0249 (4)0.0304 (4)0.0245 (4)−0.0054 (3)−0.0067 (3)−0.0025 (3)
C330.0204 (5)0.0244 (5)0.0204 (5)0.0022 (4)−0.0012 (3)0.0022 (4)
C340.0252 (5)0.0227 (5)0.0237 (5)0.0054 (4)0.0014 (4)0.0010 (4)
C350.0276 (5)0.0208 (4)0.0197 (5)0.0031 (4)0.0017 (4)−0.0029 (4)
C360.0223 (5)0.0204 (4)0.0149 (4)0.0009 (3)0.0002 (3)−0.0008 (3)
N410.0291 (5)0.0373 (5)0.0247 (5)−0.0013 (4)0.0058 (4)−0.0037 (4)
C420.0283 (6)0.0271 (5)0.0327 (6)−0.0038 (4)0.0101 (4)−0.0035 (5)
C430.0313 (6)0.0325 (6)0.0264 (5)0.0000 (5)0.0093 (4)0.0046 (5)
N11—C121.3682 (13)C27—H27A0.9800
N11—C161.3759 (13)C27—H27B0.9800
N11—H110.906 (17)C27—H27C0.9800
C12—C131.3636 (13)C28—H28A0.9800
C12—C221.4996 (14)C28—H28B0.9800
C13—C231.4507 (13)C28—H28C0.9800
C13—C141.5125 (13)C31—C321.3937 (13)
C14—C151.5165 (13)C31—C361.3973 (13)
C14—C311.5311 (13)C32—C331.3865 (14)
C14—H141.0000C32—N321.4706 (13)
C15—C161.3566 (13)N32—O321.2180 (12)
C15—C251.4651 (14)N32—O331.2257 (12)
C16—C261.4989 (14)C33—C341.3778 (15)
C22—H22A0.9800C33—H330.9500
C22—H22B0.9800C34—C351.3871 (15)
C22—H22C0.9800C34—H340.9500
C23—O241.2170 (12)C35—C361.3802 (14)
C23—O231.3357 (12)C35—H350.9500
O23—C271.4342 (12)C36—H360.9500
C25—O261.2050 (12)N41—C421.3282 (17)
C25—O251.3544 (12)N41—C43i1.3311 (17)
O25—C281.4377 (13)C42—C431.3819 (18)
C26—H26A0.9800C42—H420.9500
C26—H26B0.9800C43—N41i1.3311 (17)
C26—H26C0.9800C43—H430.9500
C12—N11—C16123.46 (8)O23—C27—H27B109.5
C12—N11—H11118.4 (10)H27A—C27—H27B109.5
C16—N11—H11117.8 (10)O23—C27—H27C109.5
C13—C12—N11118.48 (9)H27A—C27—H27C109.5
C13—C12—C22127.75 (9)H27B—C27—H27C109.5
N11—C12—C22113.77 (8)O25—C28—H28A109.5
C12—C13—C23124.66 (9)O25—C28—H28B109.5
C12—C13—C14120.65 (8)H28A—C28—H28B109.5
C23—C13—C14114.68 (8)O25—C28—H28C109.5
C13—C14—C15109.88 (8)H28A—C28—H28C109.5
C13—C14—C31111.23 (8)H28B—C28—H28C109.5
C15—C14—C31109.79 (8)C32—C31—C36115.33 (9)
C13—C14—H14108.6C32—C31—C14125.80 (8)
C15—C14—H14108.6C36—C31—C14118.66 (8)
C31—C14—H14108.6C33—C32—C31123.31 (9)
C16—C15—C25120.41 (9)C33—C32—N32114.74 (9)
C16—C15—C14119.99 (9)C31—C32—N32121.95 (9)
C25—C15—C14119.60 (8)O32—N32—O33123.91 (9)
C15—C16—N11119.08 (9)O32—N32—C32118.74 (9)
C15—C16—C26126.89 (9)O33—N32—C32117.32 (9)
N11—C16—C26114.01 (9)C34—C33—C32119.38 (10)
C12—C22—H22A109.5C34—C33—H33120.3
C12—C22—H22B109.5C32—C33—H33120.3
H22A—C22—H22B109.5C33—C34—C35119.32 (10)
C12—C22—H22C109.5C33—C34—H34120.3
H22A—C22—H22C109.5C35—C34—H34120.3
H22B—C22—H22C109.5C36—C35—C34120.14 (10)
O24—C23—O23121.36 (9)C36—C35—H35119.9
O24—C23—C13122.49 (9)C34—C35—H35119.9
O23—C23—C13116.15 (8)C35—C36—C31122.51 (9)
C23—O23—C27115.24 (8)C35—C36—H36118.7
O26—C25—O25121.79 (9)C31—C36—H36118.7
O26—C25—C15127.27 (9)C42—N41—C43i115.38 (11)
O25—C25—C15110.91 (8)C42—N41—C42ii106.16 (7)
C25—O25—C28115.21 (8)C43i—N41—C42ii137.11 (8)
C16—C26—H26A109.5N41—C42—C43122.15 (11)
C16—C26—H26B109.5N41—C42—H42118.9
H26A—C26—H26B109.5C43—C42—H42118.9
C16—C26—H26C109.5N41i—C43—C42122.46 (11)
H26A—C26—H26C109.5N41i—C43—H43118.8
H26B—C26—H26C109.5C42—C43—H43118.8
O23—C27—H27A109.5
C16—N11—C12—C1315.45 (15)C14—C15—C25—O26−176.60 (10)
C16—N11—C12—C22−164.07 (9)C16—C15—C25—O25−175.78 (9)
N11—C12—C13—C23−173.05 (9)C14—C15—C25—O255.23 (12)
C22—C12—C13—C236.40 (17)O26—C25—O25—C28−2.79 (14)
N11—C12—C13—C147.81 (14)C15—C25—O25—C28175.50 (8)
C22—C12—C13—C14−172.75 (9)C13—C14—C31—C32138.67 (9)
C12—C13—C14—C15−27.91 (12)C15—C14—C31—C32−99.50 (11)
C23—C13—C14—C15152.87 (8)C13—C14—C31—C36−46.76 (11)
C12—C13—C14—C3193.88 (10)C15—C14—C31—C3675.07 (11)
C23—C13—C14—C31−85.35 (10)C36—C31—C32—C33−0.04 (14)
C13—C14—C15—C1628.86 (12)C14—C31—C32—C33174.69 (9)
C31—C14—C15—C16−93.78 (10)C36—C31—C32—N32−179.46 (9)
C13—C14—C15—C25−152.15 (8)C14—C31—C32—N32−4.73 (15)
C31—C14—C15—C2585.21 (10)C33—C32—N32—O32130.11 (10)
C25—C15—C16—N11171.13 (9)C31—C32—N32—O32−50.42 (13)
C14—C15—C16—N11−9.89 (14)C33—C32—N32—O33−48.13 (12)
C25—C15—C16—C26−7.30 (15)C31—C32—N32—O33131.33 (10)
C14—C15—C16—C26171.68 (9)C31—C32—C33—C340.63 (16)
C12—N11—C16—C15−14.39 (15)N32—C32—C33—C34−179.91 (9)
C12—N11—C16—C26164.24 (9)C32—C33—C34—C35−0.67 (16)
C12—C13—C23—O24173.91 (11)C33—C34—C35—C360.14 (17)
C14—C13—C23—O24−6.90 (14)C34—C35—C36—C310.48 (16)
C12—C13—C23—O23−6.01 (15)C32—C31—C36—C35−0.51 (14)
C14—C13—C23—O23173.19 (8)C14—C31—C36—C35−175.64 (9)
O24—C23—O23—C27−0.71 (15)C43i—N41—C42—C43−0.10 (19)
C13—C23—O23—C27179.21 (9)C42ii—N41—C42—C43−169.14 (10)
C16—C15—C25—O262.38 (16)N41—C42—C43—N41i0.1 (2)
D—H···AD—HH···AD···AD—H···A
N11—H11···O24iii0.906 (17)1.942 (17)2.8444 (12)173.6 (15)
Table 1

Selected torsion angles (°)

C12—C13—C14—C3193.88 (10)
C31—C14—C15—C16−93.78 (10)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N11—H11⋯O24i0.906 (17)1.942 (17)2.8444 (12)173.6 (15)

Symmetry code: (i) .

  7 in total

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2.  Dimethyl 2,6-dimethyl-4-(2-nitro-phen-yl)pyridine-3,5-dicarboxyl-ate.

Authors:  Juanjuan Zheng; Xueyuan Wang; Dongying Pang; Yan Sun; Wei Su
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