Literature DB >> 21588927

2-Amino-1-methyl-1H-imidazol-4(5H)-one dimethyl sulfoxide monosolvate.

Maya Tutughamiarso, Michael Bolte.   

Abstract

In the title compound, C(4)H(7)N(3)O·C(2)H(6)OS, creatinine [2-amino-1-methyl-1H-imidazol-4(5H)one] exists in the amine form. The ring is planar (r.m.s. deviation for all non-H atoms = 0.017 Å). In the crystal, two creatinine mol-ecules form centrosymmetric hydrogen-bonded dimers linked by pairs of N-H⋯N hydrogen bonds. In addition, creatinine is linked to a dimethyl sulfoxide mol-ecule by an N-H⋯O inter-action. The packing shows layers parallel to (120).

Entities:  

Year:  2010        PMID: 21588927      PMCID: PMC3009146          DOI: 10.1107/S1600536810038997

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For information about creatinine, see: Narayanan & Appleton (1980 ▶). For related structures, see: Bell et al. (1995 ▶). For co-crystallization experiments, see: Ton & Bolte (2009 ▶). For hydrogen-bond patterns, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C4H7N3O·C2H6OS M = 191.25 Triclinic, a = 5.8997 (10) Å b = 7.3018 (13) Å c = 11.276 (2) Å α = 75.861 (18)° β = 83.763 (16)° γ = 79.694 (13)° V = 462.36 (14) Å3 Z = 2 Mo Kα radiation μ = 0.32 mm−1 T = 173 K 0.50 × 0.40 × 0.40 mm

Data collection

Siemens SMART 1K CCD diffractometer 8161 measured reflections 2997 independent reflections 2597 reflections with I > 2σ(I) R int = 0.022

Refinement

R[F 2 > 2σ(F 2)] = 0.031 wR(F 2) = 0.082 S = 0.98 2997 reflections 120 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.29 e Å−3 Δρmin = −0.32 e Å−3 Data collection: SMART (Siemens, 1995 ▶); cell refinement: SAINT (Siemens, 1995 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: Mercury (Macrae et al., 2008 ▶) and XP (Sheldrick, 2008 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810038997/bx2310sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810038997/bx2310Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C4H7N3O·C2H6OSZ = 2
Mr = 191.25F(000) = 204
Triclinic, P1Dx = 1.374 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 5.8997 (10) ÅCell parameters from 131 reflections
b = 7.3018 (13) Åθ = 1.9–32.6°
c = 11.276 (2) ŵ = 0.32 mm1
α = 75.861 (18)°T = 173 K
β = 83.763 (16)°Block, colorless
γ = 79.694 (13)°0.50 × 0.40 × 0.40 mm
V = 462.36 (14) Å3
Siemens SMART 1K CCD diffractometer2597 reflections with I > 2σ(I)
Radiation source: normal-focus sealed tubeRint = 0.022
graphiteθmax = 32.6°, θmin = 1.9°
ω scansh = −8→8
8161 measured reflectionsk = −10→10
2997 independent reflectionsl = −16→16
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.031Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.082H atoms treated by a mixture of independent and constrained refinement
S = 0.98w = 1/[σ2(Fo2) + (0.0417P)2 + 0.166P] where P = (Fo2 + 2Fc2)/3
2997 reflections(Δ/σ)max = 0.001
120 parametersΔρmax = 0.29 e Å3
0 restraintsΔρmin = −0.32 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.82954 (15)0.63634 (13)0.38132 (8)0.01974 (17)
C20.72822 (18)0.72352 (15)0.27441 (9)0.01971 (19)
C30.48598 (18)0.82480 (16)0.30299 (9)0.0218 (2)
H3A0.46870.96380.26600.026*
H3B0.36610.76990.27430.026*
N40.47636 (15)0.78571 (13)0.43582 (8)0.02055 (18)
C50.67429 (17)0.67487 (14)0.47372 (9)0.01701 (18)
O210.81565 (15)0.72319 (13)0.17026 (7)0.02772 (18)
C410.27148 (18)0.84273 (17)0.50969 (11)0.0239 (2)
H41A0.14840.77400.50060.036*
H41B0.22060.98070.48240.036*
H41C0.30680.81200.59590.036*
N510.72130 (16)0.60912 (14)0.59037 (8)0.02144 (18)
H51A0.630 (3)0.632 (2)0.6476 (16)0.038 (4)*
H51B0.856 (3)0.534 (2)0.6059 (14)0.029 (4)*
O1D0.45535 (15)0.70620 (14)0.79813 (8)0.0308 (2)
S2D0.29265 (4)0.65071 (4)0.90915 (2)0.02067 (8)
C3D0.3041 (2)0.81135 (17)1.00396 (10)0.0247 (2)
H3D10.45630.78461.03720.037*
H3D20.18470.79441.07150.037*
H3D30.27750.94330.95520.037*
C4D0.0081 (2)0.7428 (2)0.86076 (12)0.0327 (3)
H4D1−0.00120.87870.82030.049*
H4D2−0.10330.72780.93220.049*
H4D3−0.02750.67250.80320.049*
U11U22U33U12U13U23
N10.0168 (4)0.0224 (4)0.0181 (4)0.0009 (3)−0.0003 (3)−0.0043 (3)
C20.0190 (5)0.0190 (5)0.0200 (4)−0.0022 (4)−0.0009 (3)−0.0031 (4)
C30.0190 (5)0.0246 (5)0.0195 (4)0.0001 (4)−0.0031 (4)−0.0025 (4)
N40.0145 (4)0.0256 (4)0.0195 (4)0.0024 (3)−0.0013 (3)−0.0052 (3)
C50.0148 (4)0.0162 (4)0.0202 (4)−0.0018 (3)−0.0013 (3)−0.0049 (3)
O210.0282 (4)0.0329 (4)0.0189 (4)−0.0009 (3)0.0024 (3)−0.0044 (3)
C410.0148 (4)0.0272 (5)0.0284 (5)0.0016 (4)0.0016 (4)−0.0088 (4)
N510.0173 (4)0.0274 (5)0.0173 (4)0.0033 (3)−0.0008 (3)−0.0059 (3)
O1D0.0254 (4)0.0441 (5)0.0239 (4)−0.0052 (4)0.0076 (3)−0.0141 (4)
S2D0.01945 (13)0.02222 (13)0.02000 (12)−0.00115 (9)−0.00068 (9)−0.00608 (9)
C3D0.0250 (5)0.0292 (5)0.0210 (5)−0.0033 (4)0.0003 (4)−0.0096 (4)
C4D0.0202 (5)0.0450 (7)0.0337 (6)−0.0024 (5)−0.0056 (4)−0.0110 (5)
N1—C51.3591 (13)C41—H41C0.9800
N1—C21.3644 (13)N51—H51A0.823 (18)
C2—O211.2306 (13)N51—H51B0.887 (16)
C2—C31.5269 (15)O1D—S2D1.5109 (9)
C3—N41.4514 (14)S2D—C3D1.7833 (12)
C3—H3A0.9900S2D—C4D1.7844 (13)
C3—H3B0.9900C3D—H3D10.9800
N4—C51.3426 (13)C3D—H3D20.9800
N4—C411.4487 (13)C3D—H3D30.9800
C5—N511.3269 (13)C4D—H4D10.9800
C41—H41A0.9800C4D—H4D20.9800
C41—H41B0.9800C4D—H4D30.9800
C5—N1—C2106.69 (8)H41A—C41—H41C109.5
O21—C2—N1126.20 (10)H41B—C41—H41C109.5
O21—C2—C3124.36 (10)C5—N51—H51A123.0 (12)
N1—C2—C3109.44 (9)C5—N51—H51B117.3 (10)
N4—C3—C2101.23 (8)H51A—N51—H51B119.7 (16)
N4—C3—H3A111.5O1D—S2D—C3D106.00 (6)
C2—C3—H3A111.5O1D—S2D—C4D106.16 (6)
N4—C3—H3B111.5C3D—S2D—C4D97.79 (6)
C2—C3—H3B111.5S2D—C3D—H3D1109.5
H3A—C3—H3B109.3S2D—C3D—H3D2109.5
C5—N4—C41128.18 (9)H3D1—C3D—H3D2109.5
C5—N4—C3108.39 (8)S2D—C3D—H3D3109.5
C41—N4—C3123.06 (9)H3D1—C3D—H3D3109.5
N51—C5—N4124.29 (10)H3D2—C3D—H3D3109.5
N51—C5—N1121.51 (9)S2D—C4D—H4D1109.5
N4—C5—N1114.19 (9)S2D—C4D—H4D2109.5
N4—C41—H41A109.5H4D1—C4D—H4D2109.5
N4—C41—H41B109.5S2D—C4D—H4D3109.5
H41A—C41—H41B109.5H4D1—C4D—H4D3109.5
N4—C41—H41C109.5H4D2—C4D—H4D3109.5
C5—N1—C2—O21179.20 (11)C41—N4—C5—N51−5.49 (18)
C5—N1—C2—C3−0.46 (12)C3—N4—C5—N51−178.65 (10)
O21—C2—C3—N4−177.89 (11)C41—N4—C5—N1175.64 (10)
N1—C2—C3—N41.78 (11)C3—N4—C5—N12.48 (13)
C2—C3—N4—C5−2.45 (11)C2—N1—C5—N51179.85 (10)
C2—C3—N4—C41−176.03 (10)C2—N1—C5—N4−1.25 (12)
D—H···AD—HH···AD···AD—H···A
N51—H51A···O1D0.823 (18)2.028 (18)2.8403 (13)169.3 (17)
N51—H51B···N1i0.887 (16)2.040 (16)2.9225 (14)172.9 (14)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N51—H51A⋯O1D0.823 (18)2.028 (18)2.8403 (13)169.3 (17)
N51—H51B⋯N1i0.887 (16)2.040 (16)2.9225 (14)172.9 (14)

Symmetry code: (i) .

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Review 3.  Creatinine: a review.

Authors:  S Narayanan; H D Appleton
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