| Literature DB >> 21588927 |
Maya Tutughamiarso, Michael Bolte.
Abstract
In the title compound, C(4)H(7)N(3)O·C(2)H(6)OS, creatinine [2-amino-1-methyl-1H-imidazol-4(5H)one] exists in the amine form. The ring is planar (r.m.s. deviation for all non-H atoms = 0.017 Å). In the crystal, two creatinine mol-ecules form centrosymmetric hydrogen-bonded dimers linked by pairs of N-H⋯N hydrogen bonds. In addition, creatinine is linked to a dimethyl sulfoxide mol-ecule by an N-H⋯O inter-action. The packing shows layers parallel to (120).Entities:
Year: 2010 PMID: 21588927 PMCID: PMC3009146 DOI: 10.1107/S1600536810038997
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C4H7N3O·C2H6OS | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 131 reflections | |
| θ = 1.9–32.6° | |
| µ = 0.32 mm−1 | |
| α = 75.861 (18)° | |
| β = 83.763 (16)° | Block, colorless |
| γ = 79.694 (13)° | 0.50 × 0.40 × 0.40 mm |
| Siemens SMART 1K CCD diffractometer | 2597 reflections with |
| Radiation source: normal-focus sealed tube | |
| graphite | θmax = 32.6°, θmin = 1.9° |
| ω scans | |
| 8161 measured reflections | |
| 2997 independent reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2997 reflections | (Δ/σ)max = 0.001 |
| 120 parameters | Δρmax = 0.29 e Å−3 |
| 0 restraints | Δρmin = −0.32 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| N1 | 0.82954 (15) | 0.63634 (13) | 0.38132 (8) | 0.01974 (17) | |
| C2 | 0.72822 (18) | 0.72352 (15) | 0.27441 (9) | 0.01971 (19) | |
| C3 | 0.48598 (18) | 0.82480 (16) | 0.30299 (9) | 0.0218 (2) | |
| H3A | 0.4687 | 0.9638 | 0.2660 | 0.026* | |
| H3B | 0.3661 | 0.7699 | 0.2743 | 0.026* | |
| N4 | 0.47636 (15) | 0.78571 (13) | 0.43582 (8) | 0.02055 (18) | |
| C5 | 0.67429 (17) | 0.67487 (14) | 0.47372 (9) | 0.01701 (18) | |
| O21 | 0.81565 (15) | 0.72319 (13) | 0.17026 (7) | 0.02772 (18) | |
| C41 | 0.27148 (18) | 0.84273 (17) | 0.50969 (11) | 0.0239 (2) | |
| H41A | 0.1484 | 0.7740 | 0.5006 | 0.036* | |
| H41B | 0.2206 | 0.9807 | 0.4824 | 0.036* | |
| H41C | 0.3068 | 0.8120 | 0.5959 | 0.036* | |
| N51 | 0.72130 (16) | 0.60912 (14) | 0.59037 (8) | 0.02144 (18) | |
| H51A | 0.630 (3) | 0.632 (2) | 0.6476 (16) | 0.038 (4)* | |
| H51B | 0.856 (3) | 0.534 (2) | 0.6059 (14) | 0.029 (4)* | |
| O1D | 0.45535 (15) | 0.70620 (14) | 0.79813 (8) | 0.0308 (2) | |
| S2D | 0.29265 (4) | 0.65071 (4) | 0.90915 (2) | 0.02067 (8) | |
| C3D | 0.3041 (2) | 0.81135 (17) | 1.00396 (10) | 0.0247 (2) | |
| H3D1 | 0.4563 | 0.7846 | 1.0372 | 0.037* | |
| H3D2 | 0.1847 | 0.7944 | 1.0715 | 0.037* | |
| H3D3 | 0.2775 | 0.9433 | 0.9552 | 0.037* | |
| C4D | 0.0081 (2) | 0.7428 (2) | 0.86076 (12) | 0.0327 (3) | |
| H4D1 | −0.0012 | 0.8787 | 0.8203 | 0.049* | |
| H4D2 | −0.1033 | 0.7278 | 0.9322 | 0.049* | |
| H4D3 | −0.0275 | 0.6725 | 0.8032 | 0.049* |
| N1 | 0.0168 (4) | 0.0224 (4) | 0.0181 (4) | 0.0009 (3) | −0.0003 (3) | −0.0043 (3) |
| C2 | 0.0190 (5) | 0.0190 (5) | 0.0200 (4) | −0.0022 (4) | −0.0009 (3) | −0.0031 (4) |
| C3 | 0.0190 (5) | 0.0246 (5) | 0.0195 (4) | 0.0001 (4) | −0.0031 (4) | −0.0025 (4) |
| N4 | 0.0145 (4) | 0.0256 (4) | 0.0195 (4) | 0.0024 (3) | −0.0013 (3) | −0.0052 (3) |
| C5 | 0.0148 (4) | 0.0162 (4) | 0.0202 (4) | −0.0018 (3) | −0.0013 (3) | −0.0049 (3) |
| O21 | 0.0282 (4) | 0.0329 (4) | 0.0189 (4) | −0.0009 (3) | 0.0024 (3) | −0.0044 (3) |
| C41 | 0.0148 (4) | 0.0272 (5) | 0.0284 (5) | 0.0016 (4) | 0.0016 (4) | −0.0088 (4) |
| N51 | 0.0173 (4) | 0.0274 (5) | 0.0173 (4) | 0.0033 (3) | −0.0008 (3) | −0.0059 (3) |
| O1D | 0.0254 (4) | 0.0441 (5) | 0.0239 (4) | −0.0052 (4) | 0.0076 (3) | −0.0141 (4) |
| S2D | 0.01945 (13) | 0.02222 (13) | 0.02000 (12) | −0.00115 (9) | −0.00068 (9) | −0.00608 (9) |
| C3D | 0.0250 (5) | 0.0292 (5) | 0.0210 (5) | −0.0033 (4) | 0.0003 (4) | −0.0096 (4) |
| C4D | 0.0202 (5) | 0.0450 (7) | 0.0337 (6) | −0.0024 (5) | −0.0056 (4) | −0.0110 (5) |
| N1—C5 | 1.3591 (13) | C41—H41C | 0.9800 |
| N1—C2 | 1.3644 (13) | N51—H51A | 0.823 (18) |
| C2—O21 | 1.2306 (13) | N51—H51B | 0.887 (16) |
| C2—C3 | 1.5269 (15) | O1D—S2D | 1.5109 (9) |
| C3—N4 | 1.4514 (14) | S2D—C3D | 1.7833 (12) |
| C3—H3A | 0.9900 | S2D—C4D | 1.7844 (13) |
| C3—H3B | 0.9900 | C3D—H3D1 | 0.9800 |
| N4—C5 | 1.3426 (13) | C3D—H3D2 | 0.9800 |
| N4—C41 | 1.4487 (13) | C3D—H3D3 | 0.9800 |
| C5—N51 | 1.3269 (13) | C4D—H4D1 | 0.9800 |
| C41—H41A | 0.9800 | C4D—H4D2 | 0.9800 |
| C41—H41B | 0.9800 | C4D—H4D3 | 0.9800 |
| C5—N1—C2 | 106.69 (8) | H41A—C41—H41C | 109.5 |
| O21—C2—N1 | 126.20 (10) | H41B—C41—H41C | 109.5 |
| O21—C2—C3 | 124.36 (10) | C5—N51—H51A | 123.0 (12) |
| N1—C2—C3 | 109.44 (9) | C5—N51—H51B | 117.3 (10) |
| N4—C3—C2 | 101.23 (8) | H51A—N51—H51B | 119.7 (16) |
| N4—C3—H3A | 111.5 | O1D—S2D—C3D | 106.00 (6) |
| C2—C3—H3A | 111.5 | O1D—S2D—C4D | 106.16 (6) |
| N4—C3—H3B | 111.5 | C3D—S2D—C4D | 97.79 (6) |
| C2—C3—H3B | 111.5 | S2D—C3D—H3D1 | 109.5 |
| H3A—C3—H3B | 109.3 | S2D—C3D—H3D2 | 109.5 |
| C5—N4—C41 | 128.18 (9) | H3D1—C3D—H3D2 | 109.5 |
| C5—N4—C3 | 108.39 (8) | S2D—C3D—H3D3 | 109.5 |
| C41—N4—C3 | 123.06 (9) | H3D1—C3D—H3D3 | 109.5 |
| N51—C5—N4 | 124.29 (10) | H3D2—C3D—H3D3 | 109.5 |
| N51—C5—N1 | 121.51 (9) | S2D—C4D—H4D1 | 109.5 |
| N4—C5—N1 | 114.19 (9) | S2D—C4D—H4D2 | 109.5 |
| N4—C41—H41A | 109.5 | H4D1—C4D—H4D2 | 109.5 |
| N4—C41—H41B | 109.5 | S2D—C4D—H4D3 | 109.5 |
| H41A—C41—H41B | 109.5 | H4D1—C4D—H4D3 | 109.5 |
| N4—C41—H41C | 109.5 | H4D2—C4D—H4D3 | 109.5 |
| C5—N1—C2—O21 | 179.20 (11) | C41—N4—C5—N51 | −5.49 (18) |
| C5—N1—C2—C3 | −0.46 (12) | C3—N4—C5—N51 | −178.65 (10) |
| O21—C2—C3—N4 | −177.89 (11) | C41—N4—C5—N1 | 175.64 (10) |
| N1—C2—C3—N4 | 1.78 (11) | C3—N4—C5—N1 | 2.48 (13) |
| C2—C3—N4—C5 | −2.45 (11) | C2—N1—C5—N51 | 179.85 (10) |
| C2—C3—N4—C41 | −176.03 (10) | C2—N1—C5—N4 | −1.25 (12) |
| H··· | ||||
| N51—H51A···O1D | 0.823 (18) | 2.028 (18) | 2.8403 (13) | 169.3 (17) |
| N51—H51B···N1i | 0.887 (16) | 2.040 (16) | 2.9225 (14) | 172.9 (14) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N51—H51 | 0.823 (18) | 2.028 (18) | 2.8403 (13) | 169.3 (17) |
| N51—H51 | 0.887 (16) | 2.040 (16) | 2.9225 (14) | 172.9 (14) |
Symmetry code: (i) .