| Literature DB >> 21578512 |
Cuong Quoc Ton, Michael Bolte.
Abstract
Crystals of the title compound, C(12)H(8)N(2)·C(7)H(8)O(2), were obtained during cocrystallization experiments of a compound with two hydrogen-bond donors (2-hydroxy-benzyl alcohol) with another compound containing two hydrogen-bond acceptors (phenanthroline). Unexpectedly, the two mol-ecules do not form dimers with two O-H⋯N hydrogen bonds connecting the two mol-ecules. However, one of the hydr-oxy groups forms a bifurcated hydrogen bond to both phenanthroline N atoms, whereas the other hydr-oxy group forms an O-H⋯O hydrogen bond to a symmetry-equivalent 2-hydroxy-benzyl alcohol mol-ecule. In addition, the crystal packing is stabilized by π-π inter-actions between the two phenanthroline ring systems, with a centroid-centroid distance of 3.570 Å.Entities:
Year: 2009 PMID: 21578512 PMCID: PMC2971015 DOI: 10.1107/S1600536809044699
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C12H8N2·C7H8O2 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2yn | Cell parameters from 11957 reflections |
| θ = 3.0–25.0° | |
| µ = 0.09 mm−1 | |
| β = 109.13 (3)° | Block, colourless |
| 0.60 × 0.50 × 0.30 mm | |
| Stoe IPDS II two-circle diffractometer | 2518 reflections with |
| Radiation source: fine-focus sealed tube | |
| graphite | θmax = 25.7°, θmin = 2.8° |
| ω scans | |
| 20425 measured reflections | |
| 2885 independent reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 2885 reflections | (Δ/σ)max = 0.001 |
| 208 parameters | Δρmax = 0.15 e Å−3 |
| 0 restraints | Δρmin = −0.21 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| N1 | 0.68091 (17) | 0.08958 (5) | 0.49625 (11) | 0.0357 (3) | |
| N2 | 0.89787 (17) | 0.03273 (5) | 0.72184 (11) | 0.0371 (3) | |
| C1 | 0.72912 (18) | 0.02470 (6) | 0.49544 (13) | 0.0330 (3) | |
| C2 | 0.5740 (2) | 0.11589 (7) | 0.38637 (14) | 0.0418 (3) | |
| H2 | 0.5403 | 0.1612 | 0.3860 | 0.050* | |
| C3 | 0.5071 (2) | 0.08146 (8) | 0.27060 (15) | 0.0478 (4) | |
| H3 | 0.4303 | 0.1029 | 0.1945 | 0.057* | |
| C4 | 0.5553 (2) | 0.01591 (8) | 0.26982 (15) | 0.0477 (4) | |
| H4 | 0.5114 | −0.0087 | 0.1927 | 0.057* | |
| C5 | 0.6694 (2) | −0.01440 (7) | 0.38328 (14) | 0.0398 (3) | |
| C6 | 0.7275 (2) | −0.08270 (7) | 0.38997 (17) | 0.0480 (4) | |
| H6 | 0.6881 | −0.1088 | 0.3146 | 0.058* | |
| C7 | 0.8361 (2) | −0.11014 (7) | 0.50050 (18) | 0.0497 (4) | |
| H7 | 0.8733 | −0.1552 | 0.5017 | 0.060* | |
| C8 | 0.8973 (2) | −0.07275 (6) | 0.61706 (15) | 0.0406 (3) | |
| C9 | 1.0057 (2) | −0.10017 (7) | 0.73516 (18) | 0.0513 (4) | |
| H9 | 1.0437 | −0.1452 | 0.7402 | 0.062* | |
| C10 | 1.0568 (2) | −0.06217 (8) | 0.84299 (18) | 0.0526 (4) | |
| H10 | 1.1285 | −0.0803 | 0.9238 | 0.063* | |
| C11 | 1.0001 (2) | 0.00436 (7) | 0.83078 (15) | 0.0459 (4) | |
| H11 | 1.0376 | 0.0308 | 0.9057 | 0.055* | |
| C12 | 0.84467 (19) | −0.00511 (6) | 0.61498 (13) | 0.0342 (3) | |
| O1 | 0.96385 (12) | 0.19916 (5) | 0.97867 (8) | 0.0343 (2) | |
| H1O | 0.9040 | 0.1823 | 0.8970 | 0.051* | |
| O2 | 1.25869 (12) | 0.33737 (4) | 1.24759 (8) | 0.0299 (2) | |
| H2O | 1.2750 | 0.3699 | 1.2006 | 0.045* | |
| C13 | 1.16077 (16) | 0.20302 (6) | 1.00360 (11) | 0.0254 (3) | |
| C14 | 1.26346 (16) | 0.24552 (6) | 1.10244 (11) | 0.0252 (3) | |
| C15 | 1.46410 (17) | 0.25043 (6) | 1.13083 (12) | 0.0300 (3) | |
| H15 | 1.5363 | 0.2785 | 1.1984 | 0.036* | |
| C16 | 1.56203 (18) | 0.21500 (6) | 1.06219 (13) | 0.0333 (3) | |
| H16 | 1.6992 | 0.2192 | 1.0829 | 0.040* | |
| C17 | 1.45820 (18) | 0.17387 (6) | 0.96403 (12) | 0.0325 (3) | |
| H17 | 1.5239 | 0.1501 | 0.9164 | 0.039* | |
| C18 | 1.25733 (18) | 0.16711 (6) | 0.93473 (12) | 0.0293 (3) | |
| H18 | 1.1863 | 0.1382 | 0.8682 | 0.035* | |
| C19 | 1.15095 (17) | 0.28505 (6) | 1.17128 (11) | 0.0297 (3) | |
| H19A | 1.0333 | 0.3037 | 1.1071 | 0.036* | |
| H19B | 1.1069 | 0.2548 | 1.2265 | 0.036* |
| N1 | 0.0415 (6) | 0.0277 (5) | 0.0471 (7) | −0.0037 (5) | 0.0269 (5) | −0.0039 (5) |
| N2 | 0.0471 (7) | 0.0279 (6) | 0.0456 (7) | −0.0038 (5) | 0.0277 (5) | −0.0007 (5) |
| C1 | 0.0352 (7) | 0.0267 (6) | 0.0486 (8) | −0.0082 (5) | 0.0295 (6) | −0.0070 (5) |
| C2 | 0.0450 (8) | 0.0384 (8) | 0.0490 (8) | −0.0024 (6) | 0.0248 (7) | 0.0022 (6) |
| C3 | 0.0454 (8) | 0.0580 (10) | 0.0469 (8) | −0.0112 (7) | 0.0244 (7) | 0.0013 (7) |
| C4 | 0.0474 (8) | 0.0588 (10) | 0.0470 (8) | −0.0211 (7) | 0.0293 (7) | −0.0152 (7) |
| C5 | 0.0415 (7) | 0.0374 (7) | 0.0552 (9) | −0.0164 (6) | 0.0356 (7) | −0.0155 (6) |
| C6 | 0.0556 (9) | 0.0368 (8) | 0.0695 (11) | −0.0192 (7) | 0.0449 (9) | −0.0242 (7) |
| C7 | 0.0539 (9) | 0.0247 (7) | 0.0892 (13) | −0.0095 (6) | 0.0490 (9) | −0.0169 (7) |
| C8 | 0.0388 (7) | 0.0240 (6) | 0.0719 (10) | −0.0049 (5) | 0.0357 (7) | −0.0035 (6) |
| C9 | 0.0459 (8) | 0.0278 (7) | 0.0909 (13) | 0.0019 (6) | 0.0371 (9) | 0.0081 (8) |
| C10 | 0.0484 (9) | 0.0439 (8) | 0.0702 (11) | 0.0004 (7) | 0.0257 (8) | 0.0165 (8) |
| C11 | 0.0534 (9) | 0.0402 (8) | 0.0509 (9) | −0.0057 (6) | 0.0263 (7) | 0.0027 (6) |
| C12 | 0.0365 (7) | 0.0250 (6) | 0.0538 (8) | −0.0066 (5) | 0.0321 (6) | −0.0056 (5) |
| O1 | 0.0208 (4) | 0.0510 (6) | 0.0310 (5) | −0.0017 (4) | 0.0083 (3) | −0.0068 (4) |
| O2 | 0.0376 (5) | 0.0240 (4) | 0.0281 (4) | −0.0015 (3) | 0.0108 (4) | 0.0035 (3) |
| C13 | 0.0224 (5) | 0.0288 (6) | 0.0254 (6) | 0.0018 (4) | 0.0084 (4) | 0.0058 (5) |
| C14 | 0.0248 (6) | 0.0253 (6) | 0.0264 (6) | 0.0022 (4) | 0.0094 (5) | 0.0061 (5) |
| C15 | 0.0254 (6) | 0.0291 (6) | 0.0349 (6) | −0.0022 (5) | 0.0090 (5) | 0.0024 (5) |
| C16 | 0.0232 (6) | 0.0341 (7) | 0.0446 (7) | 0.0017 (5) | 0.0138 (5) | 0.0059 (6) |
| C17 | 0.0323 (6) | 0.0325 (6) | 0.0380 (7) | 0.0079 (5) | 0.0188 (5) | 0.0061 (5) |
| C18 | 0.0304 (6) | 0.0299 (6) | 0.0283 (6) | 0.0024 (5) | 0.0105 (5) | 0.0016 (5) |
| C19 | 0.0263 (6) | 0.0326 (6) | 0.0311 (6) | −0.0018 (5) | 0.0104 (5) | −0.0024 (5) |
| N1—C2 | 1.3230 (19) | C10—C11 | 1.403 (2) |
| N1—C1 | 1.3609 (17) | C10—H10 | 0.9500 |
| N2—C11 | 1.3235 (19) | C11—H11 | 0.9500 |
| N2—C12 | 1.3562 (17) | O1—C13 | 1.3674 (14) |
| C1—C5 | 1.4166 (19) | O1—H1O | 0.9310 |
| C1—C12 | 1.448 (2) | O2—C19 | 1.4203 (15) |
| C2—C3 | 1.400 (2) | O2—H2O | 0.8714 |
| C2—H2 | 0.9500 | C13—C18 | 1.3980 (17) |
| C3—C4 | 1.374 (2) | C13—C14 | 1.4006 (17) |
| C3—H3 | 0.9500 | C14—C15 | 1.3901 (17) |
| C4—C5 | 1.401 (2) | C14—C19 | 1.5165 (16) |
| C4—H4 | 0.9500 | C15—C16 | 1.3979 (18) |
| C5—C6 | 1.441 (2) | C15—H15 | 0.9500 |
| C6—C7 | 1.341 (2) | C16—C17 | 1.3816 (19) |
| C6—H6 | 0.9500 | C16—H16 | 0.9500 |
| C7—C8 | 1.437 (2) | C17—C18 | 1.3938 (18) |
| C7—H7 | 0.9500 | C17—H17 | 0.9500 |
| C8—C9 | 1.402 (2) | C18—H18 | 0.9500 |
| C8—C12 | 1.4206 (18) | C19—H19A | 0.9900 |
| C9—C10 | 1.366 (3) | C19—H19B | 0.9900 |
| C9—H9 | 0.9500 | ||
| C2—N1—C1 | 117.24 (12) | N2—C11—C10 | 124.36 (15) |
| C11—N2—C12 | 117.73 (12) | N2—C11—H11 | 117.8 |
| N1—C1—C5 | 122.70 (13) | C10—C11—H11 | 117.8 |
| N1—C1—C12 | 118.04 (12) | N2—C12—C8 | 122.19 (13) |
| C5—C1—C12 | 119.26 (12) | N2—C12—C1 | 118.51 (11) |
| N1—C2—C3 | 124.43 (14) | C8—C12—C1 | 119.30 (12) |
| N1—C2—H2 | 117.8 | C13—O1—H1O | 110.0 |
| C3—C2—H2 | 117.8 | C19—O2—H2O | 111.4 |
| C4—C3—C2 | 118.34 (15) | O1—C13—C18 | 122.60 (11) |
| C4—C3—H3 | 120.8 | O1—C13—C14 | 116.55 (10) |
| C2—C3—H3 | 120.8 | C18—C13—C14 | 120.85 (11) |
| C3—C4—C5 | 119.67 (14) | C15—C14—C13 | 118.11 (11) |
| C3—C4—H4 | 120.2 | C15—C14—C19 | 123.11 (11) |
| C5—C4—H4 | 120.2 | C13—C14—C19 | 118.77 (10) |
| C4—C5—C1 | 117.62 (13) | C14—C15—C16 | 121.53 (12) |
| C4—C5—C6 | 122.97 (14) | C14—C15—H15 | 119.2 |
| C1—C5—C6 | 119.42 (15) | C16—C15—H15 | 119.2 |
| C7—C6—C5 | 121.31 (14) | C17—C16—C15 | 119.61 (11) |
| C7—C6—H6 | 119.3 | C17—C16—H16 | 120.2 |
| C5—C6—H6 | 119.3 | C15—C16—H16 | 120.2 |
| C6—C7—C8 | 121.26 (13) | C16—C17—C18 | 120.15 (11) |
| C6—C7—H7 | 119.4 | C16—C17—H17 | 119.9 |
| C8—C7—H7 | 119.4 | C18—C17—H17 | 119.9 |
| C9—C8—C12 | 117.59 (14) | C17—C18—C13 | 119.73 (12) |
| C9—C8—C7 | 122.96 (14) | C17—C18—H18 | 120.1 |
| C12—C8—C7 | 119.44 (14) | C13—C18—H18 | 120.1 |
| C10—C9—C8 | 120.10 (14) | O2—C19—C14 | 114.26 (10) |
| C10—C9—H9 | 119.9 | O2—C19—H19A | 108.7 |
| C8—C9—H9 | 119.9 | C14—C19—H19A | 108.7 |
| C9—C10—C11 | 118.03 (16) | O2—C19—H19B | 108.7 |
| C9—C10—H10 | 121.0 | C14—C19—H19B | 108.7 |
| C11—C10—H10 | 121.0 | H19A—C19—H19B | 107.6 |
| C2—N1—C1—C5 | −0.08 (18) | C11—N2—C12—C1 | 178.66 (11) |
| C2—N1—C1—C12 | −179.49 (11) | C9—C8—C12—N2 | 0.86 (18) |
| C1—N1—C2—C3 | 0.4 (2) | C7—C8—C12—N2 | 179.91 (11) |
| N1—C2—C3—C4 | −0.2 (2) | C9—C8—C12—C1 | −178.65 (11) |
| C2—C3—C4—C5 | −0.3 (2) | C7—C8—C12—C1 | 0.40 (18) |
| C3—C4—C5—C1 | 0.55 (19) | N1—C1—C12—N2 | 0.52 (17) |
| C3—C4—C5—C6 | −179.40 (13) | C5—C1—C12—N2 | −178.92 (10) |
| N1—C1—C5—C4 | −0.37 (18) | N1—C1—C12—C8 | −179.96 (11) |
| C12—C1—C5—C4 | 179.04 (11) | C5—C1—C12—C8 | 0.61 (17) |
| N1—C1—C5—C6 | 179.58 (11) | O1—C13—C14—C15 | 179.69 (10) |
| C12—C1—C5—C6 | −1.02 (17) | C18—C13—C14—C15 | −0.63 (17) |
| C4—C5—C6—C7 | −179.66 (13) | O1—C13—C14—C19 | −1.68 (15) |
| C1—C5—C6—C7 | 0.40 (19) | C18—C13—C14—C19 | 178.01 (11) |
| C5—C6—C7—C8 | 0.6 (2) | C13—C14—C15—C16 | 0.95 (17) |
| C6—C7—C8—C9 | 177.95 (13) | C19—C14—C15—C16 | −177.62 (11) |
| C6—C7—C8—C12 | −1.0 (2) | C14—C15—C16—C17 | −0.24 (19) |
| C12—C8—C9—C10 | 0.1 (2) | C15—C16—C17—C18 | −0.81 (18) |
| C7—C8—C9—C10 | −178.94 (13) | C16—C17—C18—C13 | 1.12 (18) |
| C8—C9—C10—C11 | −0.9 (2) | O1—C13—C18—C17 | 179.27 (11) |
| C12—N2—C11—C10 | −0.1 (2) | C14—C13—C18—C17 | −0.39 (17) |
| C9—C10—C11—N2 | 1.0 (2) | C15—C14—C19—O2 | 12.73 (16) |
| C11—N2—C12—C8 | −0.86 (18) | C13—C14—C19—O2 | −165.84 (10) |
| H··· | ||||
| O1—H1O···O2i | 0.93 | 1.69 | 2.6125 (14) | 168 |
| O2—H2O···N1ii | 0.87 | 2.29 | 3.0390 (15) | 144 |
| O2—H2O···N2ii | 0.87 | 2.15 | 2.8663 (14) | 140 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O1—H1 | 0.93 | 1.69 | 2.6125 (14) | 168 |
| O2—H2 | 0.87 | 2.29 | 3.0390 (15) | 144 |
| O2—H2 | 0.87 | 2.15 | 2.8663 (14) | 140 |
Symmetry codes: (i) ; (ii) .