Literature DB >> 21578512

2-Hydroxy-benzyl alcohol-phenanthroline (1/1).

Cuong Quoc Ton, Michael Bolte.   

Abstract

Crystals of the title compound, C(12)H(8)N(2C(7)H(8)O(2), were obtained during cocrystallization experiments of a compound with two hydrogen-bond donors (2-hydroxy-benzyl alcohol) with another compound containing two hydrogen-bond acceptors (phenanthroline). Unexpectedly, the two mol-ecules do not form dimers with two O-H⋯N hydrogen bonds connecting the two mol-ecules. However, one of the hydr-oxy groups forms a bifurcated hydrogen bond to both phenanthroline N atoms, whereas the other hydr-oxy group forms an O-H⋯O hydrogen bond to a symmetry-equivalent 2-hydroxy-benzyl alcohol mol-ecule. In addition, the crystal packing is stabilized by π-π inter-actions between the two phenanthroline ring systems, with a centroid-centroid distance of 3.570  Å.

Entities:  

Year:  2009        PMID: 21578512      PMCID: PMC2971015          DOI: 10.1107/S1600536809044699

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For co-crystallization experiments, see: Ton & Bolte (2005 ▶); Tutughamiarso et al. (2009 ▶).

Experimental

Crystal data

C12H8N2·C7H8O2 M = 304.34 Monoclinic, a = 7.264 (1) Å b = 20.256 (3) Å c = 11.082 (2) Å β = 109.13 (3)° V = 1540.6 (4) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 173 K 0.60 × 0.50 × 0.30 mm

Data collection

Stoe IPDS II two-circle diffractometer Absorption correction: none 20425 measured reflections 2885 independent reflections 2518 reflections with I > 2σ(I) R int = 0.036

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.099 S = 1.06 2885 reflections 208 parameters H-atom parameters constrained Δρmax = 0.15 e Å−3 Δρmin = −0.21 e Å−3 Data collection: X-AREA (Stoe & Cie, 2001 ▶); cell refinement: X-AREA; data reduction: X-AREA; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XP in SHELXTL-Plus (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809044699/om2291sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809044699/om2291Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H8N2·C7H8O2F(000) = 640
Mr = 304.34Dx = 1.312 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 11957 reflections
a = 7.264 (1) Åθ = 3.0–25.0°
b = 20.256 (3) ŵ = 0.09 mm1
c = 11.082 (2) ÅT = 173 K
β = 109.13 (3)°Block, colourless
V = 1540.6 (4) Å30.60 × 0.50 × 0.30 mm
Z = 4
Stoe IPDS II two-circle diffractometer2518 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.036
graphiteθmax = 25.7°, θmin = 2.8°
ω scansh = −8→8
20425 measured reflectionsk = −24→24
2885 independent reflectionsl = −13→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.099H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.0569P)2 + 0.2526P] where P = (Fo2 + 2Fc2)/3
2885 reflections(Δ/σ)max = 0.001
208 parametersΔρmax = 0.15 e Å3
0 restraintsΔρmin = −0.21 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.68091 (17)0.08958 (5)0.49625 (11)0.0357 (3)
N20.89787 (17)0.03273 (5)0.72184 (11)0.0371 (3)
C10.72912 (18)0.02470 (6)0.49544 (13)0.0330 (3)
C20.5740 (2)0.11589 (7)0.38637 (14)0.0418 (3)
H20.54030.16120.38600.050*
C30.5071 (2)0.08146 (8)0.27060 (15)0.0478 (4)
H30.43030.10290.19450.057*
C40.5553 (2)0.01591 (8)0.26982 (15)0.0477 (4)
H40.5114−0.00870.19270.057*
C50.6694 (2)−0.01440 (7)0.38328 (14)0.0398 (3)
C60.7275 (2)−0.08270 (7)0.38997 (17)0.0480 (4)
H60.6881−0.10880.31460.058*
C70.8361 (2)−0.11014 (7)0.50050 (18)0.0497 (4)
H70.8733−0.15520.50170.060*
C80.8973 (2)−0.07275 (6)0.61706 (15)0.0406 (3)
C91.0057 (2)−0.10017 (7)0.73516 (18)0.0513 (4)
H91.0437−0.14520.74020.062*
C101.0568 (2)−0.06217 (8)0.84299 (18)0.0526 (4)
H101.1285−0.08030.92380.063*
C111.0001 (2)0.00436 (7)0.83078 (15)0.0459 (4)
H111.03760.03080.90570.055*
C120.84467 (19)−0.00511 (6)0.61498 (13)0.0342 (3)
O10.96385 (12)0.19916 (5)0.97867 (8)0.0343 (2)
H1O0.90400.18230.89700.051*
O21.25869 (12)0.33737 (4)1.24759 (8)0.0299 (2)
H2O1.27500.36991.20060.045*
C131.16077 (16)0.20302 (6)1.00360 (11)0.0254 (3)
C141.26346 (16)0.24552 (6)1.10244 (11)0.0252 (3)
C151.46410 (17)0.25043 (6)1.13083 (12)0.0300 (3)
H151.53630.27851.19840.036*
C161.56203 (18)0.21500 (6)1.06219 (13)0.0333 (3)
H161.69920.21921.08290.040*
C171.45820 (18)0.17387 (6)0.96403 (12)0.0325 (3)
H171.52390.15010.91640.039*
C181.25733 (18)0.16711 (6)0.93473 (12)0.0293 (3)
H181.18630.13820.86820.035*
C191.15095 (17)0.28505 (6)1.17128 (11)0.0297 (3)
H19A1.03330.30371.10710.036*
H19B1.10690.25481.22650.036*
U11U22U33U12U13U23
N10.0415 (6)0.0277 (5)0.0471 (7)−0.0037 (5)0.0269 (5)−0.0039 (5)
N20.0471 (7)0.0279 (6)0.0456 (7)−0.0038 (5)0.0277 (5)−0.0007 (5)
C10.0352 (7)0.0267 (6)0.0486 (8)−0.0082 (5)0.0295 (6)−0.0070 (5)
C20.0450 (8)0.0384 (8)0.0490 (8)−0.0024 (6)0.0248 (7)0.0022 (6)
C30.0454 (8)0.0580 (10)0.0469 (8)−0.0112 (7)0.0244 (7)0.0013 (7)
C40.0474 (8)0.0588 (10)0.0470 (8)−0.0211 (7)0.0293 (7)−0.0152 (7)
C50.0415 (7)0.0374 (7)0.0552 (9)−0.0164 (6)0.0356 (7)−0.0155 (6)
C60.0556 (9)0.0368 (8)0.0695 (11)−0.0192 (7)0.0449 (9)−0.0242 (7)
C70.0539 (9)0.0247 (7)0.0892 (13)−0.0095 (6)0.0490 (9)−0.0169 (7)
C80.0388 (7)0.0240 (6)0.0719 (10)−0.0049 (5)0.0357 (7)−0.0035 (6)
C90.0459 (8)0.0278 (7)0.0909 (13)0.0019 (6)0.0371 (9)0.0081 (8)
C100.0484 (9)0.0439 (8)0.0702 (11)0.0004 (7)0.0257 (8)0.0165 (8)
C110.0534 (9)0.0402 (8)0.0509 (9)−0.0057 (6)0.0263 (7)0.0027 (6)
C120.0365 (7)0.0250 (6)0.0538 (8)−0.0066 (5)0.0321 (6)−0.0056 (5)
O10.0208 (4)0.0510 (6)0.0310 (5)−0.0017 (4)0.0083 (3)−0.0068 (4)
O20.0376 (5)0.0240 (4)0.0281 (4)−0.0015 (3)0.0108 (4)0.0035 (3)
C130.0224 (5)0.0288 (6)0.0254 (6)0.0018 (4)0.0084 (4)0.0058 (5)
C140.0248 (6)0.0253 (6)0.0264 (6)0.0022 (4)0.0094 (5)0.0061 (5)
C150.0254 (6)0.0291 (6)0.0349 (6)−0.0022 (5)0.0090 (5)0.0024 (5)
C160.0232 (6)0.0341 (7)0.0446 (7)0.0017 (5)0.0138 (5)0.0059 (6)
C170.0323 (6)0.0325 (6)0.0380 (7)0.0079 (5)0.0188 (5)0.0061 (5)
C180.0304 (6)0.0299 (6)0.0283 (6)0.0024 (5)0.0105 (5)0.0016 (5)
C190.0263 (6)0.0326 (6)0.0311 (6)−0.0018 (5)0.0104 (5)−0.0024 (5)
N1—C21.3230 (19)C10—C111.403 (2)
N1—C11.3609 (17)C10—H100.9500
N2—C111.3235 (19)C11—H110.9500
N2—C121.3562 (17)O1—C131.3674 (14)
C1—C51.4166 (19)O1—H1O0.9310
C1—C121.448 (2)O2—C191.4203 (15)
C2—C31.400 (2)O2—H2O0.8714
C2—H20.9500C13—C181.3980 (17)
C3—C41.374 (2)C13—C141.4006 (17)
C3—H30.9500C14—C151.3901 (17)
C4—C51.401 (2)C14—C191.5165 (16)
C4—H40.9500C15—C161.3979 (18)
C5—C61.441 (2)C15—H150.9500
C6—C71.341 (2)C16—C171.3816 (19)
C6—H60.9500C16—H160.9500
C7—C81.437 (2)C17—C181.3938 (18)
C7—H70.9500C17—H170.9500
C8—C91.402 (2)C18—H180.9500
C8—C121.4206 (18)C19—H19A0.9900
C9—C101.366 (3)C19—H19B0.9900
C9—H90.9500
C2—N1—C1117.24 (12)N2—C11—C10124.36 (15)
C11—N2—C12117.73 (12)N2—C11—H11117.8
N1—C1—C5122.70 (13)C10—C11—H11117.8
N1—C1—C12118.04 (12)N2—C12—C8122.19 (13)
C5—C1—C12119.26 (12)N2—C12—C1118.51 (11)
N1—C2—C3124.43 (14)C8—C12—C1119.30 (12)
N1—C2—H2117.8C13—O1—H1O110.0
C3—C2—H2117.8C19—O2—H2O111.4
C4—C3—C2118.34 (15)O1—C13—C18122.60 (11)
C4—C3—H3120.8O1—C13—C14116.55 (10)
C2—C3—H3120.8C18—C13—C14120.85 (11)
C3—C4—C5119.67 (14)C15—C14—C13118.11 (11)
C3—C4—H4120.2C15—C14—C19123.11 (11)
C5—C4—H4120.2C13—C14—C19118.77 (10)
C4—C5—C1117.62 (13)C14—C15—C16121.53 (12)
C4—C5—C6122.97 (14)C14—C15—H15119.2
C1—C5—C6119.42 (15)C16—C15—H15119.2
C7—C6—C5121.31 (14)C17—C16—C15119.61 (11)
C7—C6—H6119.3C17—C16—H16120.2
C5—C6—H6119.3C15—C16—H16120.2
C6—C7—C8121.26 (13)C16—C17—C18120.15 (11)
C6—C7—H7119.4C16—C17—H17119.9
C8—C7—H7119.4C18—C17—H17119.9
C9—C8—C12117.59 (14)C17—C18—C13119.73 (12)
C9—C8—C7122.96 (14)C17—C18—H18120.1
C12—C8—C7119.44 (14)C13—C18—H18120.1
C10—C9—C8120.10 (14)O2—C19—C14114.26 (10)
C10—C9—H9119.9O2—C19—H19A108.7
C8—C9—H9119.9C14—C19—H19A108.7
C9—C10—C11118.03 (16)O2—C19—H19B108.7
C9—C10—H10121.0C14—C19—H19B108.7
C11—C10—H10121.0H19A—C19—H19B107.6
C2—N1—C1—C5−0.08 (18)C11—N2—C12—C1178.66 (11)
C2—N1—C1—C12−179.49 (11)C9—C8—C12—N20.86 (18)
C1—N1—C2—C30.4 (2)C7—C8—C12—N2179.91 (11)
N1—C2—C3—C4−0.2 (2)C9—C8—C12—C1−178.65 (11)
C2—C3—C4—C5−0.3 (2)C7—C8—C12—C10.40 (18)
C3—C4—C5—C10.55 (19)N1—C1—C12—N20.52 (17)
C3—C4—C5—C6−179.40 (13)C5—C1—C12—N2−178.92 (10)
N1—C1—C5—C4−0.37 (18)N1—C1—C12—C8−179.96 (11)
C12—C1—C5—C4179.04 (11)C5—C1—C12—C80.61 (17)
N1—C1—C5—C6179.58 (11)O1—C13—C14—C15179.69 (10)
C12—C1—C5—C6−1.02 (17)C18—C13—C14—C15−0.63 (17)
C4—C5—C6—C7−179.66 (13)O1—C13—C14—C19−1.68 (15)
C1—C5—C6—C70.40 (19)C18—C13—C14—C19178.01 (11)
C5—C6—C7—C80.6 (2)C13—C14—C15—C160.95 (17)
C6—C7—C8—C9177.95 (13)C19—C14—C15—C16−177.62 (11)
C6—C7—C8—C12−1.0 (2)C14—C15—C16—C17−0.24 (19)
C12—C8—C9—C100.1 (2)C15—C16—C17—C18−0.81 (18)
C7—C8—C9—C10−178.94 (13)C16—C17—C18—C131.12 (18)
C8—C9—C10—C11−0.9 (2)O1—C13—C18—C17179.27 (11)
C12—N2—C11—C10−0.1 (2)C14—C13—C18—C17−0.39 (17)
C9—C10—C11—N21.0 (2)C15—C14—C19—O212.73 (16)
C11—N2—C12—C8−0.86 (18)C13—C14—C19—O2−165.84 (10)
D—H···AD—HH···AD···AD—H···A
O1—H1O···O2i0.931.692.6125 (14)168
O2—H2O···N1ii0.872.293.0390 (15)144
O2—H2O···N2ii0.872.152.8663 (14)140
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1O⋯O2i0.931.692.6125 (14)168
O2—H2O⋯N1ii0.872.293.0390 (15)144
O2—H2O⋯N2ii0.872.152.8663 (14)140

Symmetry codes: (i) ; (ii) .

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